Special Feature

Method of the Year 2012

Nature Methods' choice for Method of the Year 2012 is targeted proteomics. A collection of articles showcases how mass spectrometry technology is being developed and applied for targeted protein analysis in both basic and translational research. The Methods to Watch feature provides a glimpse at possible future Methods of the Year.

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Editorial

Special feature: Method of the Year 2012

Method of the Year 2012

doi:10.1038/nmeth.2329

New method and tool developments are helping to bring targeted proteome analysis technologies to a broader array of biologists.


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News Feature

Special feature: Method of the Year 2012

Targeted proteomics

Vivien Marx

doi:10.1038/nmeth.2285

Analysis of a preselected group of proteins delivers more precise, quantitative, sensitive data to more biologists. Vivien Marx reports.


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Primer

Special feature: Method of the Year 2012

Mass spectrometry–based targeted proteomics

Allison Doerr

doi:10.1038/nmeth.2286

A brief overview of mass spectrometry technology for targeted proteomics applications is presented.


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Commentary

Special feature: Method of the Year 2012

Proteomics meets the scientific method

Paola Picotti, Bernd Bodenmiller & Ruedi Aebersold

doi:10.1038/nmeth.2291

By delivering precise, reproducible quantification of proteins of interest in biological samples, targeted proteomics approaches are allowing researchers to apply the scientific method using mass spectrometry.


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Perspective

Special feature: Method of the Year 2012

Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

Michael A Gillette & Steven A Carr

doi:10.1038/nmeth.2309

The role of targeted mass spectrometry technology in the field of clinical proteomics is discussed in this Perspective.


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Methods to Watch

Special feature: Method of the Year 2012

Disruptive nanopores

Nicole Rusk

doi:10.1038/nmeth.2292

2013 will see the first commercial nanopore sequencers.


Special feature: Method of the Year 2012

Probing microbiome function

Tal Nawy

doi:10.1038/nmeth.2293

In studies of microbiome function, marker sequencing will be balanced by alternative profiling approaches.


Special feature: Method of the Year 2012

Near-infrared probes

Erika Pastrana

doi:10.1038/nmeth.2294

Development of genetically encoded tools with absorption and emission spectra in the near infrared is worth the trouble.


Special feature: Method of the Year 2012

Defective (but useful) diamonds

Daniel Evanko

doi:10.1038/nmeth.2295

Nitrogen vacancy center defects in diamonds confer remarkably useful properties.


Special feature: Method of the Year 2012

In vitro niches

Natalie de Souza

doi:10.1038/nmeth.2296

Attempts to replicate the stem cell microenvironment in the culture dish continue.


Special feature: Method of the Year 2012

Volumetric imaging in a snapshot

Erika Pastrana

doi:10.1038/nmeth.2297

Microscopes that render tissue-volume images from single snapshots are making their way into biology.


Special feature: Method of the Year 2012

Mass spectrometry of intact protein complexes

Allison Doerr

doi:10.1038/nmeth.2298

Mass spectrometry technology to detect and characterize large, intact protein complexes is becoming more accessible.


Special feature: Method of the Year 2012

Machines learn phenotypes

Natalie de Souza

doi:10.1038/nmeth.2299

Automated classifiers speed up biological phenotyping.


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