The precision of cellular processes is intrinsically limited, which implies that cells naturally make mistakes. In addition, cells are exposed to a multitude of stresses, both internal and environmental, which can induce molecular damage. This can occur at many levels: at the DNA level, for example as a result of DNA replication errors or exposure to mutagenizing agents; at the RNA level, from errors that arise during transcription or post-transcriptional processing; and at the protein level, owing to defects in protein-folding pathways.

To minimize or prevent the accumulation of such damage, cells have developed cytoprotective quality control systems. These prevent errors from occurring, by safeguarding the molecular systems that orchestrate these processes. If damage has occurred, they detect damaged or abnormal macromolecules and initiate either their repair or their degradation. In addition, quality control systems can trigger more 'global' stress responses that increase a cell's capacity to cope with stress when local responses are not sufficient. Notably, a failure to carry out these cytoprotective responses has been linked to ageing and disease, including neurodegeneration caused by the accumulation of misfolded protein aggregates.

This specially commissioned Focus issue highlights key examples of quality control systems that are in place at the RNA and protein levels and in which our structural and molecular understanding is advancing.



Research Highlights

Protein folding: Misfolded proteins join the Q

doi:10.1038/nrm3668

Nature Reviews Molecular Cell Biology 14, 608 (2013)

Transcription: Proteasome power to Def1

doi:10.1038/nrm3664

Nature Reviews Molecular Cell Biology 14, 612 (2013)

Journal Club

The first chaperonin | PDF (91 KB)

p611 | doi:10.1038/nrm3665

Nature Reviews Molecular Cell Biology 14, 611 (2013)

The many sides of CIN | PDF (100 KB)

p611 | doi:10.1038/nrm3666

Nature Reviews Molecular Cell Biology 14, 611 (2013)

IN BRIEF

Protein degradation: A new player in ERAD | PDF (82 KB)

p612 | doi:10.1038/nrm3672

Nature Reviews Molecular Cell Biology 14, 612 (2013)

RNA decay: mRNAs get together | PDF (85 KB)

p612 | doi:10.1038/nrm3673

Nature Reviews Molecular Cell Biology 14, 612 (2013)

Protein stability: Getting into the membrane | PDF (86 KB)

p612 | doi:10.1038/nrm3674

Nature Reviews Molecular Cell Biology 14, 612 (2013)

Foreword

Telling right from wrong in life — cellular quality control

Georg Stoecklin & Bernd Bukau

doi:10.1038/nrm3662

Nature Reviews Molecular Cell Biology 14, 613 (2013)

Reviews

Protein rescue from aggregates by powerful molecular chaperone machines

Shannon M. Doyle, Olivier Genest & Sue Wickner

doi:10.1038/nrm3660

Nature Reviews Molecular Cell Biology 14, 617 (2013)

Disruption of the protein quality control system can lead to protein misfolding, inactivity and aggregation. New structural and biochemical insights into how disaggregases collaborate with co-chaperones and utilize ATP to untangle these aggregates are gained. This is clinically relevant as aggregation is often linked to common neurodegenerative diseases.

Chaperone machines for protein folding, unfolding and disaggregation

Helen Saibil

doi:10.1038/nrm3658

Nature Reviews Molecular Cell Biology 14, 630 (2013)

Chaperones are heavy-duty molecular machines that assist nascent proteins to reach their native fold but also mediate unfolding and prevent the accumulation of toxic protein aggregates. There is an increasing structural understanding of how they might perform such large-scale rearrangements.

Cytoplasmic RNA: a case of the tail wagging the dog

Chris J. Norbury

doi:10.1038/nrm3645

Nature Reviews Molecular Cell Biology 14, 643 (2013)

The addition or removal of poly(A) tails from the 3' ends of eukaryotic RNAs is a key regulator of RNA stability and, consequently, of gene expression. Recent work has revealed that RNA turnover is also controlled by the addition of oligo(U) tails.

Perspectives

OPINION

The RNA exosome and proteasome: common principles of degradation control

p654 | doi:10.1038/nrm3657

Nature Reviews Molecular Cell Biology 14, 654 (2013)

Structural and mechanistic studies have revealed common features of the way in which RNA and proteins are prepared for degradation by the exosome and proteasome, respectively. By extrapolating from what has been learnt about the proteasome, we may gain increased understanding of how its RNA counterpart, the exosome, is assembled and controlled.

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