Featured
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Short Communication |
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- Matthew R Olm
- , Christopher T Brown
- & Jillian F Banfield
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Perspective
| Open AccessExact sequence variants should replace operational taxonomic units in marker-gene data analysis
- Benjamin J Callahan
- , Paul J McMurdie
- & Susan P Holmes
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Original Article |
Genomic exploration of individual giant ocean viruses
- William H Wilson
- , Ilana C Gilg
- & Steven W Wilhelm
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Original Article
| Open AccessDivergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire
- Sang-Hoon Lee
- , Jackson W Sorensen
- & Ashley Shade
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Original Article |
Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands
- Julia Kyaschenko
- , Karina E Clemmensen
- & Björn D Lindahl
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Original Article
| Open AccessRoot microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time
- Nina Dombrowski
- , Klaus Schlaeppi
- & Paul Schulze-Lefert
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Original Article |
Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics
- Freya Mosbæk
- , Henrik Kjeldal
- & Jeppe L Nielsen
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Original Article
| Open AccessMassively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers
- Sarah J Spencer
- , Manu V Tamminen
- & Eric J Alm
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Short Communication |
16Stimator: statistical estimation of ribosomal gene copy numbers from draft genome assemblies
- Matthew Perisin
- , Madlen Vetter
- & Joy Bergelson
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Original Article |
Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils
- Hilary T C Leung
- , Kendra R Maas
- & William W Mohn
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Short Communication
| Open AccessIn situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice
- Christiane Uhlig
- , Fabian Kilpert
- & Bánk Beszteri
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Original Article |
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution
- Joran Martijn
- , Frederik Schulz
- & Thijs J G Ettema
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Original Article |
Deep sequencing of non-ribosomal peptide synthetases and polyketide synthases from the microbiomes of Australian marine sponges
- Jason N Woodhouse
- , Lu Fan
- & Brett A Neilan
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Original Article |
Combining high-throughput sequencing with fruit body surveys reveals contrasting life-history strategies in fungi
- Otso Ovaskainen
- , Dmitry Schigel
- & Jenni Nordén
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Original Article |
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
- Kevin L Vergin
- , Bánk Beszteri
- & Stephen J Giovannoni
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Original Article |
Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study
- Charles Bachy
- , John R Dolan
- & David Moreira
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Original Article
| Open AccessTargeted recovery of novel phylogenetic diversity from next-generation sequence data
- Michael D J Lynch
- , Andrea K Bartram
- & Josh D Neufeld
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Original Article |
Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis
- Thomas Danhorn
- , Curtis R Young
- & Edward F DeLong
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Short Communication
| Open AccessUltra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- J Gregory Caporaso
- , Christian L Lauber
- & Rob Knight
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Original Article |
Rapid shifts in picoeukaryote community structure in response to ocean acidification
- Nicholas G Meakin
- & Michael Wyman
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Original Article |
Reproducibility and quantitation of amplicon sequencing-based detection
- Jizhong Zhou
- , Liyou Wu
- & Yunfeng Yang
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Original Article |
Capturing diversity of marine heterotrophic protists: one cell at a time
- Jane L Heywood
- , Michael E Sieracki
- & Ramunas Stepanauskas
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Original Article |
Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA
- Jon Bråte
- , Ramiro Logares
- & Kamran Shalchian-Tabrizi
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Original Article |
Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing
- Rohit Ghai
- , Ana-Belén Martin-Cuadrado
- & Francisco Rodriguez-Valera
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Original Article |
Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica
- Lia C R S Teixeira
- , Raquel S Peixoto
- & Alexandre S Rosado
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Original Article |
Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing
- Man Kit Cheung
- , Chun Hang Au
- & Chong Kim Wong
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Original Article |
Bacterial diversity in the oral cavity of 10 healthy individuals
- Elisabeth M Bik
- , Clara Davis Long
- & David A Relman
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Original Article |
PANGEA: pipeline for analysis of next generation amplicons
- Adriana Giongo
- , David B Crabb
- & Eric W Triplett