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Brief Communication
| Open Access
Human milk oligosaccharides modify the strength of priority effects in the Bifidobacterium community assembly during infancy
- Martin F. Laursen
- & Henrik M. Roager
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Article |
The ColR/S two-component system is a conserved determinant of host association across Pseudomonas species
- Christina L. Wiesmann
- , Yue Zhang
- & Cara H. Haney
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Article
| Open Access
Impact of host age on viral and bacterial communities in a waterbird population
- Sarah C. Hill
- , Sarah François
- & Oliver G. Pybus
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Article
| Open Access
MicroRNA-mediated regulation of lipid metabolism in virus-infected Emiliania huxleyi
- Enquan Zhang
- , Jingjing Gao
- & Jingwen Liu
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Article
| Open Access
Identification of nosZ-expressing microorganisms consuming trace N2O in microaerobic chemostat consortia dominated by an uncultured Burkholderiales
- Daehyun D. Kim
- , Heejoo Han
- & Sukhwan Yoon
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Article |
Active lithoautotrophic and methane-oxidizing microbial community in an anoxic, sub-zero, and hypersaline High Arctic spring
- Elisse Magnuson
- , Ianina Altshuler
- & Lyle G. Whyte
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Article
| Open Access
Linking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes
- Jana Täumer
- , Sven Marhan
- & Tim Urich
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Article
| Open Access
Soils and sediments host Thermoplasmata archaea encoding novel copper membrane monooxygenases (CuMMOs)
- Spencer Diamond
- , Adi Lavy
- & Jillian F. Banfield
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Article |
Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean
- Tom O. Delmont
- , Juan José Pierella Karlusich
- & Eric Pelletier
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Article |
Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage
- Stefan Kusch
- , Justine Larrouy
- & Sylvain Raffaele
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Article
| Open Access
Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing
- J. J. Teh
- , E. M. Berendsen
- & M. Morrison
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Article
| Open Access
Metaplasmidome-encoded functions of Siberian low-centered polygonal tundra soils
- Adrian Gorecki
- , Stine Holm
- & Fabian Horn
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Article
| Open Access
Distinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients
- Yueqiong Ni
- , Zoltan Lohinai
- & Gianni Panagiotou
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Article |
Functional genome-centric view of the CO-driven anaerobic microbiome
- Haowen Duan
- , Pinjing He
- & Fan Lü
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Article |
Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes
- Corinne M. Walsh
- , Isadore Becker-Uncapher
- & Noah Fierer
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Article
| Open Access
The soil microbial food web revisited: Predatory myxobacteria as keystone taxa?
- Sebastian Petters
- , Verena Groß
- & Tim Urich
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Article
| Open Access
Resolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets
- Daniele De Luca
- , Roberta Piredda
- & Wiebe H.C.F. Kooistra
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Article
| Open Access
Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut
- Mariko Takeuchi
- , Hirokazu Kuwahara
- & Yuichi Hongoh
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Article
| Open Access
Non-antibiotic pharmaceuticals enhance the transmission of exogenous antibiotic resistance genes through bacterial transformation
- Yue Wang
- , Ji Lu
- & Jianhua Guo
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Article |
Symbiolite formation: a powerful in vitro model to untangle the role of bacterial communities in the photosynthesis-induced formation of microbialites
- Matthew R. Nitschke
- , Cátia Fidalgo
- & Jörg C. Frommlet
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Article
| Open Access
Iron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus
- Namil Lee
- , Woori Kim
- & Byung-Kwan Cho
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Article
| Open Access
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics
- Liping Hao
- , Thomas Yssing Michaelsen
- & Morten Simonsen Dueholm
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Article
| Open Access
Microbial succession during wheat bran fermentation and colonisation by human faecal microbiota as a result of niche diversification
- Kim De Paepe
- , Joran Verspreet
- & Tom Van de Wiele
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Article
| Open Access
Spatial and temporal axes impact ecology of the gut microbiome in juvenile European lobster (Homarus gammarus)
- Corey C. Holt
- , Mark van der Giezen
- & David Bass
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Article
| Open Access
The potential of sedimentary ancient DNA for reconstructing past sea ice evolution
- Stijn De Schepper
- , Jessica L. Ray
- & Aud Larsen
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Article |
Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities
- Cresten Mansfeldt
- , Stefan Achermann
- & Kathrin Fenner
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Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate
- José M. González
- , Laura Hernández
- & Carlos Pedrós-Alió
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Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations
- Stefan Lambert
- , Margot Tragin
- & Pierre E. Galand
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Article
| Open Access
Comparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes
- Shun’ichi Ishii
- , Shino Suzuki
- & Orianna Bretschger
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Brief Communication |
Quantitative stable isotope probing with H218O reveals that most bacterial taxa in soil synthesize new ribosomal RNA
- Katerina Papp
- , Rebecca L. Mau
- & Egbert Schwartz
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Article
| Open Access
Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome
- Zachary Armstrong
- , Keith Mewis
- & Steven J. Hallam
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Article |
Oral microbiome development during childhood: an ecological succession influenced by postnatal factors and associated with tooth decay
- Majda Dzidic
- , Maria C. Collado
- & Alex Mira
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Article
| Open Access
Elevated circulating levels of succinate in human obesity are linked to specific gut microbiota
- Carolina Serena
- , Victoria Ceperuelo-Mallafré
- & Sonia Fernández-Veledo
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Lysogeny is prevalent and widely distributed in the murine gut microbiota
- Min-Soo Kim
- & Jin-Woo Bae
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The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings
- S. V. Balasundaram
- , J. Hess
- & I. Skrede
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Short Communication
| Open Access
Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum
- Jit Ern Chen
- , Guoxin Cui
- & Manuel Aranda
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Original Article |
Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria
- Julien Tremblay
- , Etienne Yergeau
- & Charles W Greer
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Short Communication |
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- Matthew R Olm
- , Christopher T Brown
- & Jillian F Banfield
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Perspective
| Open Access
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
- Benjamin J Callahan
- , Paul J McMurdie
- & Susan P Holmes
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Original Article
| Open Access
Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire
- Sang-Hoon Lee
- , Jackson W Sorensen
- & Ashley Shade
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Original Article |
Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands
- Julia Kyaschenko
- , Karina E Clemmensen
- & Björn D Lindahl
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Original Article |
Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics
- Freya Mosbæk
- , Henrik Kjeldal
- & Jeppe L Nielsen
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Original Article
| Open Access
Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers
- Sarah J Spencer
- , Manu V Tamminen
- & Eric J Alm
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Short Communication |
16Stimator: statistical estimation of ribosomal gene copy numbers from draft genome assemblies
- Matthew Perisin
- , Madlen Vetter
- & Joy Bergelson
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Original Article |
Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils
- Hilary T C Leung
- , Kendra R Maas
- & William W Mohn
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Original Article |
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution
- Joran Martijn
- , Frederik Schulz
- & Thijs J G Ettema
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Original Article
| Open Access
Targeted recovery of novel phylogenetic diversity from next-generation sequence data
- Michael D J Lynch
- , Andrea K Bartram
- & Josh D Neufeld
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Original Article |
PANGEA: pipeline for analysis of next generation amplicons
- Adriana Giongo
- , David B Crabb
- & Eric W Triplett
Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria