Featured
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Brief Communication
| Open AccessHuman milk oligosaccharides modify the strength of priority effects in the Bifidobacterium community assembly during infancy
- Martin F. Laursen
- & Henrik M. Roager
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Article
| Open AccessMetabolic influence of core ciliates within the rumen microbiome
- Thea O. Andersen
- , Ianina Altshuler
- & Phillip B. Pope
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Article
| Open AccessThermophilic Dehalococcoidia with unusual traits shed light on an unexpected past
- Marike Palmer
- , Jonathan K. Covington
- & Brian P. Hedlund
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Article |
The ColR/S two-component system is a conserved determinant of host association across Pseudomonas species
- Christina L. Wiesmann
- , Yue Zhang
- & Cara H. Haney
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Article
| Open AccessImpact of host age on viral and bacterial communities in a waterbird population
- Sarah C. Hill
- , Sarah François
- & Oliver G. Pybus
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Article |
Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by Citrobacter rodentium
- Sarah E. Woodward
- , Stefanie L. Vogt
- & B. Brett Finlay
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Article
| Open AccessPlant-associated fungi support bacterial resilience following water limitation
- Rachel Hestrin
- , Megan Kan
- & Jennifer Pett-Ridge
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Article
| Open AccessMicroRNA-mediated regulation of lipid metabolism in virus-infected Emiliania huxleyi
- Enquan Zhang
- , Jingjing Gao
- & Jingwen Liu
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Article
| Open AccessIdentification of nosZ-expressing microorganisms consuming trace N2O in microaerobic chemostat consortia dominated by an uncultured Burkholderiales
- Daehyun D. Kim
- , Heejoo Han
- & Sukhwan Yoon
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Article |
Active lithoautotrophic and methane-oxidizing microbial community in an anoxic, sub-zero, and hypersaline High Arctic spring
- Elisse Magnuson
- , Ianina Altshuler
- & Lyle G. Whyte
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Article
| Open AccessLinking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes
- Jana Täumer
- , Sven Marhan
- & Tim Urich
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Brief Communication
| Open AccessEvidence for de novo acquisition of microalgal symbionts by bleached adult corals
- Hugo J. Scharfenstein
- , Wing Yan Chan
- & Madeleine J. H. van Oppen
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Article
| Open AccessSoils and sediments host Thermoplasmata archaea encoding novel copper membrane monooxygenases (CuMMOs)
- Spencer Diamond
- , Adi Lavy
- & Jillian F. Banfield
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Article
| Open AccessUniversal activity-based labeling method for ammonia- and alkane-oxidizing bacteria
- Dimitra Sakoula
- , Garrett J. Smith
- & Sebastian Lücker
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Article |
Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean
- Tom O. Delmont
- , Juan José Pierella Karlusich
- & Eric Pelletier
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Article |
Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage
- Stefan Kusch
- , Justine Larrouy
- & Sylvain Raffaele
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Article
| Open AccessBiosynthetic potential of uncultured Antarctic soil bacteria revealed through long-read metagenomic sequencing
- Valentin Waschulin
- , Chiara Borsetto
- & Elizabeth Wellington
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Article
| Open AccessNovel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing
- J. J. Teh
- , E. M. Berendsen
- & M. Morrison
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Article
| Open AccessMetaplasmidome-encoded functions of Siberian low-centered polygonal tundra soils
- Adrian Gorecki
- , Stine Holm
- & Fabian Horn
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Article
| Open AccessDistinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients
- Yueqiong Ni
- , Zoltan Lohinai
- & Gianni Panagiotou
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Article |
Functional genome-centric view of the CO-driven anaerobic microbiome
- Haowen Duan
- , Pinjing He
- & Fan Lü
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Article |
Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes
- Corinne M. Walsh
- , Isadore Becker-Uncapher
- & Noah Fierer
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Article
| Open AccessThe soil microbial food web revisited: Predatory myxobacteria as keystone taxa?
- Sebastian Petters
- , Verena Groß
- & Tim Urich
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Article
| Open AccessResolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets
- Daniele De Luca
- , Roberta Piredda
- & Wiebe H.C.F. Kooistra
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Article
| Open AccessParallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut
- Mariko Takeuchi
- , Hirokazu Kuwahara
- & Yuichi Hongoh
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Article
| Open AccessNon-antibiotic pharmaceuticals enhance the transmission of exogenous antibiotic resistance genes through bacterial transformation
- Yue Wang
- , Ji Lu
- & Jianhua Guo
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Article |
Symbiolite formation: a powerful in vitro model to untangle the role of bacterial communities in the photosynthesis-induced formation of microbialites
- Matthew R. Nitschke
- , Cátia Fidalgo
- & Jörg C. Frommlet
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Article
| Open AccessIron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus
- Namil Lee
- , Woori Kim
- & Byung-Kwan Cho
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Article
| Open AccessNovel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics
- Liping Hao
- , Thomas Yssing Michaelsen
- & Morten Simonsen Dueholm
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Article
| Open AccessFunction-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere
- Devin F. R. Doud
- , Robert M. Bowers
- & Tanja Woyke
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Unlinked rRNA genes are widespread among bacteria and archaea
- Tess E. Brewer
- , Mads Albertsen
- & Noah Fierer
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Article
| Open AccessMicrobial succession during wheat bran fermentation and colonisation by human faecal microbiota as a result of niche diversification
- Kim De Paepe
- , Joran Verspreet
- & Tom Van de Wiele
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Article
| Open AccessSpatial and temporal axes impact ecology of the gut microbiome in juvenile European lobster (Homarus gammarus)
- Corey C. Holt
- , Mark van der Giezen
- & David Bass
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Article
| Open AccessThe potential of sedimentary ancient DNA for reconstructing past sea ice evolution
- Stijn De Schepper
- , Jessica L. Ray
- & Aud Larsen
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Article
| Open AccessUnraveling the biophysical underpinnings to the success of multispecies biofilms in porous environments
- David Scheidweiler
- , Hannes Peter
- & Tom J. Battin
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Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities
- Cresten Mansfeldt
- , Stefan Achermann
- & Kathrin Fenner
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Brief Communication
| Open AccessGenetic basis for the establishment of endosymbiosis in Paramecium
- Ming He
- , Jinfeng Wang
- & Miao Miao
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Article |
Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate
- José M. González
- , Laura Hernández
- & Carlos Pedrós-Alió
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Article |
Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations
- Stefan Lambert
- , Margot Tragin
- & Pierre E. Galand
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Article
| Open AccessComparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes
- Shun’ichi Ishii
- , Shino Suzuki
- & Orianna Bretschger
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Brief Communication |
Quantitative stable isotope probing with H218O reveals that most bacterial taxa in soil synthesize new ribosomal RNA
- Katerina Papp
- , Rebecca L. Mau
- & Egbert Schwartz
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Article
| Open AccessMetagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome
- Zachary Armstrong
- , Keith Mewis
- & Steven J. Hallam
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Oral microbiome development during childhood: an ecological succession influenced by postnatal factors and associated with tooth decay
- Majda Dzidic
- , Maria C. Collado
- & Alex Mira
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Article
| Open AccessElevated circulating levels of succinate in human obesity are linked to specific gut microbiota
- Carolina Serena
- , Victoria Ceperuelo-Mallafré
- & Sonia Fernández-Veledo
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Lysogeny is prevalent and widely distributed in the murine gut microbiota
- Min-Soo Kim
- & Jin-Woo Bae
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Article |
The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings
- S. V. Balasundaram
- , J. Hess
- & I. Skrede
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Short Communication
| Open AccessRecent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum
- Jit Ern Chen
- , Guoxin Cui
- & Manuel Aranda
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Original Article
| Open AccessDNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies
- Ryan M Ziels
- , Diana Z Sousa
- & David A C Beck
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Original Article |
Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria
- Julien Tremblay
- , Etienne Yergeau
- & Charles W Greer