Abstract
The v-raf murine sarcoma viral homolog B1 (BRAF) gene, one of the human isoforms of RAF, is activated by Ras, leading to cooperative effects in cells responsive to growth factor signals. Recently, somatic missense mutations of the BRAF gene have been detected in more than 66% of malignant melanomas of the skin. We analyzed 42 malignant melanomas of the uvea, 3 corresponding liver metastases, and 10 cutaneous melanomas for possible BRAF mutations: after microdissection, mutation analysis of BRAF and KRAS was performed. The expression of extracellular-regulated kinase 1 and 2 (ERK1/2), an important downstream point of convergence in the Ras-RAF-MEK-Erk pathway, was analyzed immunohistochemically. Interestingly, we failed to detect activating BRAF mutations in uvea melanomas and their corresponding liver metastases. There were no mutations of BRAF in corresponding non-neoplastic uvea specimens, although we detected three BRAF mutations in sporadic cutaneous melanoma that led to a substitution of valine by glutamic acid at position 599 (V599E). KRAS mutations were detected in 1 of 10 cutaneous melanoma but not in uveal or metastatic melanoma. Despite the lack of activating mutations in the BRAF gene, we identified constitutively activated ERK in almost all (86%) uveal melanoma tissues tested but not in corresponding normal retina or uveal cells. Our data indicate that BRAF gene mutations are rare to absent events in uveal melanoma. The finding of activated Erk suggests a causative role for MAPK activation in uveal melanoma independent of activating BRAF or RAS mutations.
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Malignant melanoma of the uvea is an uncommon tumor with a prevalence of 6 in 1,000,000 per year, a frequency of approximately 12% that of cutaneous melanomas (Singh and Topham, 2003a). There is a great variation in its incidence around the world, being lowest in Africa and highest in Scandinavian countries, reflecting the racial differences in pigmentation. The role of UV light in the pathogenesis of uveal melanomas is still under intense discussion. Uveal melanomas, arising from the ciliary body and choroid, are highly aggressive tumors, causing death in up to 50% of the patients as a result of metastatic disease (Singh and Topham, 2003b). The clinical features of uveal melanomas located in the posterior part of the eye (visual loss, visual field deficits) may lead to early recognition and, therefore, effective local treatment of the primary tumor. However, the disease tends to spread, most often to the liver (Hendrix et al, 1998).
The differences between cutaneous and uveal melanomas are intriguing (McCartney, 1995). Both share a common cell of origin but differ substantially in their behavior and response to chemotherapy. There is increasing evidence that this is related to differences in their molecular phenotype. For example, p53 mutations seem to be less common in uveal melanomas than in skin melanomas, probably because of the lack of UV exposure in the uvea (Chowers et al, 2002). Additional differences exist in proliferation-associated proteins such as c-myc and cyclin D1 (Cree, 2000; White et al, 1998). Overexpression of the former molecule is associated with a poor prognosis in skin melanomas but is associated with a good prognosis in uveal melanomas, although there is considerable genetic heterogeneity within each type. Epidemiologically, the two entities also behave differently. The prevalence of cutaneous melanoma has increased dramatically during the last several decades, whereas such a trend is less evident with ocular melanomas (Singh and Topham, 2003a). In contrast, the incidence of cutaneous melanomas seems to be dependent on latitude, presumably reflecting exposure to ultraviolet light, as opposed to uveal melanomas (Desmond and Soong, 2003).
The Ras/Raf/extracellular-regulated kinase (ERK) pathway is relevant for proliferation, survival, angiogenesis, and oncogenesis and seems to be critically involved in the development of melanoma (Easty and Bennett, 2001). Although mutations of the v-raf murine sarcoma viral homolog B1 (BRAF) have recently been described in approximately 66% of malignant cutaneous melanomas and 82% of melanocytic nevi (Davies et al, 2002), activating Ras and BRAF were also found in benign nevi (Pollock et al, 2003). However, recent data from melanoma-prone families suggests that BRAF is unlikely to be a melanoma susceptibility gene (Laud et al, 2003). Instead, BRAF mutations may be viewed as a progression marker, because they are only weakly expressed in the radial (initial) growth phase of cutaneous melanomas and become highly prevalent in the vertical (advanced) growth stages (Dong et al, 2003; Satyamoorthy et al, 2003). Our study was performed to assess BRAF and KRAS mutations and to analyze downstream signaling of the Ras/Raf/ERK pathway in uveal melanomas.
Results
BRAF and KRAS Gene Alterations
Genomic DNA from uveal melanoma and corresponding normal tissue was analyzed for BRAF gene mutations. We failed to detect somatic BRAF mutations in all 42 analyzed patients. In liver metastases of uveal melanomas, BRAF was of wild type as well. BRAF mutations were found in 3 (30%) of 10 sporadic cutaneous melanomas. As expected, mutations represented the T1796A mutation, resulting in the substitution of valine 599 by glutamate, a previously documented hotspot (sequence version NM004333.1). In all three cases, the normal epithelium of the same patient exhibited wild-type BRAF.
We did not detect KRAS mutations in uveal melanomas and corresponding metastases. In one sporadic cutaneous melanoma, a mutation of codon 12 (GGT → GTT) was detected, leading to a glycine to valine amino acid substitution. This particular cutaneous melanoma had wild-type BRAF. In summary, there was no significant correlation between the mutation status of BRAF, tumor stage or grade, or other histopathologic factors (tumor size, vascular invasion, multiplicity, desmoplastic reaction).
Expression of Active ERK
Given the importance of the Ras-Raf pathway for proliferation, survival, angiogenesis, and oncogenesis, we analyzed downstream signaling (which has been described to occur via activating BRAF mutations) in more detail. Active (ie, phosphorylated) ERK (p42/44 MAPK) was observed in 36 (86%) of 42 uveal melanomas in tumors of different cellular types with a nearly homogeneous intratumoral expression (Fig. 2, G, H, and J), whereas unphosphorylated ERK showed baseline levels (Fig. 2, E, F, and I). The active protein was observed in the epithelioid, spindle, and mixed cell type. Melanomas of the choroidea or ciliary body were also positive.
In cutaneous melanomas and corresponding metastases, active phosphorylated ERK immunostaining was observed as well (data not shown), whereas, as expected, unphosphorylated ERK was observed in normal melanocytes of the ciliary body and the iris (Fig. 2, A and B). In contrast to the strong immunostaining of phosphorylated ERK in uveal melanomas, active ERK was almost negative in normal pigmented uveal or retinal cells (Fig. 2, C and D).
Discussion
Although BRAF was examined in a variety of human malignancies (Brose et al, 2002; Davies et al, 2002; Yuen et al, 2002) and found to be mutated in approximately 66% of cutaneous malignant melanomas, our study confirms the lack of BRAF mutations in uveal melanoma (Cohen et al, 2003; Edmunds et al, 2003) and elaborates on the constitutive activation of the Ras-RAF-MEK-Erk pathway by demonstrating phosphorylated Erk. In contrast to cutaneous melanoma or colon cancer (Yuen et al, 2002), we failed to detect BRAF mutation in this tumor entity as has been recently reported (Cohen et al, 2003; Edmunds et al, 2003). Cutaneous melanoma specimens had a comparable frequency of mutated BRAF when compared with the literature (Brose et al, 2002; Davies et al, 2002). Our BRAF mutation of skin melanomas occurred at nucleotide 1796, leading to a T to A change in exon 15 of the BRAF gene. It has been previously shown that this mutation in the activation segment is a hotspot for BRAF mutation in human cancer, leading to a conversion of valine 599 to glutamic acid (Davies et al, 2002; Yuen et al, 2002).
Albeit uveal and cutaneous melanomas share a common cell of origin, they differ substantially in their behavior and response to chemotherapy. Our data support the idea that this is related to differences in their molecular phenotype. Besides BRAF, several other genetic differences exist between skin and uveal melanomas (Chowers et al, 2002; Cree, 2000). There is no association between uveal melanomas and the p16-related mutations found in cutaneous melanomas. p53 or pRB mutations are rare events in uveal as compared with skin melanomas (Chowers et al, 2002; Cree, 2000). Chromosomal imbalances, monosomy 3, trisomy 8, and structural or numerical abnormalities of chromosome 6 have been reported for uveal but not for skin melanomas (Metzelaar-Blok et al, 2002). In addition, very recently, BRAF has been ruled out as a melanoma susceptibility gene (Lang et al, 2003; Laud et al, 2003).
The high frequency of BRAF activation mutations in cutaneous melanomas and also melanocytic nevi provide new evidence that the Ras-RAF-MEK-Erk pathway plays a critical role in tumorigenesis of melanomas (Rajagopalan et al, 2002). In uveal melanomas, activating mutations in Ras are rarely observed. As a consequence of its mutation, BRAF gains the ability to interact with MEK and several other signaling molecules without the prerequisite of being phosphorylated. In the present study we show that most uveal melanomas signal through constitutively activated Erk1/2 (p44/42 MAPK). One may speculate that for uveal melanomas, neither RAS nor BRAF mutations may be a prerequisite for the activation of Ras-RAF-MEK-Erk pathway. Alternative ways of activation of ERK have recently been detected. The inhibition of Rac1 or Cdc42 signaling led to MAPK and Erk activation via a pathway involving PI(3)K, Akt, Raf, and MEK (Peyssonnaux and Eychene, 2001; Rul et al, 2002). Interestingly, Cdc42 was implicated in the activation of p38, which in relation to the activation status of Erk, determined whether a tumor cell was actively proliferating (high Erk/p38 ratio) or was dormant (low Erk/p38 ratio) (Aguirre-Ghiso et al, 2003). These challenging assumptions are further substantiated by the description of Raf mutants that dissociate MEK/ERK activation from malignant transformation but not from proliferation (Dhillon et al, 2003).
In conclusion, we have demonstrated that in contrast to cutaneous melanomas, BRAF gene mutations are rare to absent events in uveal melanomas. However, the Erk1/2 pathway downstream of Ras is constitutively active in both melanoma entities. Identification and understanding of the precise cellular events that precede these two independent mechanisms may provide clues to the inhibition of Ras/Raf/ERK signaling using small molecule receptor tyrosine kinase inhibitors or siRNA.
Materials and Methods
Patients and Tissue Samples
Tissue samples (cross sections) of 42 patients with primary malignant melanoma of the uvea were collected between 1990 and 2002. Tumor typing and staging were performed using Union Internationale Contre le Cancer [International Union Against Cancer (UICC) (2002)] criteria. The majority of the primary tumors were located in the choroidea (n = 26), followed by the ciliary body (n = 12) and iris (n = 4). According to UICC (2002), the staging was as follows: 15 patients presented with a Stage I tumor, 21 with Stage II, and 6 with Stage III disease. In three patients, corresponding liver metastases were available for analysis. We further analyzed 10 randomly selected patients with sporadic cutaneous melanoma from the files of the Institute of Pathology. All patients were informed of special examination of tumor samples, which was in accordance with the ethical standards of the Committee on Human Experimentation of the University of Leipzig.
DNA Samples
For each sample, microdissection of formalin-fixed paraffin-embedded tissue was performed as described previously (Tannapfel et al, 2003) using a UV laser microbeam (PALM, Bernried, Germany) (Fig. 1, A to C). Using the UV laser beam at a high repetition rate (approximately 20 pulses/second), a circle was cut around the target cells (Fig. 1, B and C). This resulted in complete separation of the target population from neighboring tissue (Fig. 1, B and C).
Mutation Analysis
All pre-PCR tissue was handled in an environment free of PCR products. All samples were coded, and the investigator was blinded to all patients’ clinical details. Deparaffinized microdissected tissue was recovered during a 15-minute incubation with xylene followed by centrifugation for 5 minutes at 14,000 rpm two times. The tissue pellet was then washed twice in absolute ethanol followed by two washes in PBS. The pellet was incubated with 10 pellet volumes (approximately 500 μl) of lysis buffer [0.32 m sucrose, 10 mm Tris-HCl, 1% (v/v) Triton X-100] and 0.2 volumes of proteinase K (final concentration 400 μg/ml) for 2 to 3 days at 37° C. DNA was phenol-chloroform extracted and precipitated in ethanol using conventional techniques. The resulting DNA pellet was resuspended in 50 μl of TE buffer, pH 7.4 (10 mm Tris-HCl, pH 7.4, 1 mm EDTA, pH 8.0). DNA samples were stored at −20° C. Using matched samples (tumor and normal tissue from the same patient) we screened for exon 11 and exon 15 BRAF mutations. PCR primers were designed to amplify the exon plus at least 50 bp of flanking intronic sequence according to previously published protocols (Davies et al, 2002). The primers were adopted from those published in the literature to omit analyzing the BRAF pseudogene (Davies et al, 2002; Naoki et al, 2002; Yuen et al, 2002). The following primers were used—exon 15: forward: GCCCCTCGATAACCAATTTT, reverse: TCATCCATATTTCACATTCCCTA; exon 11: forward: TCCCTCTCAGGCATAAGGTAA, reverse: CGAACAGTGAA TATTTCCTTTGAT. A total of 20 ng of genomic DNA from all test samples was amplified using standard PCR conditions. Sequencing analysis was performed as described previously (Tannapfel at al, 2003).
For KRAS, the first exon was amplified by PCR using primers designed to avoid amplification of the KRAS pseudogene. The primers used were 5′-ATTATAAGGCCTGCTGAAAATG-ACTGA-3′ (upstream primer) and 5′-ATATGCATATTAAAACAAGATTTACCT-CTA-3′ (downstream primer), giving a 155-bp product. Amplification was performed using a touchdown PCR technique (McCartney, 1995; Metzelaar-Blok et al, 2002) from 63° C to 53° C for 10 cycles, followed by 30 cycles at 94° C, 53° C, and 72° C. PCR products were purified using the Qiaquick PCR purification kit (Qiagen, Hilden, Germany) and sequenced as described previously (Tannapfel et al, 2003; Weber et al, 2003).
As a positive control for ras mutation analysis, DNA from colon carcinoma cell lines SW480 (Clontech, Palo Alto, California) and HCT116 (American Type Culture Collection, Rockville, Maryland) with known KRAS mutations at codon 12 (GTT) and codon 13 (GAC) respectively, were used. Negative controls, without DNA, were run as controls for contamination.
Immunohistochemistry
For immunohistochemistry, paraffin-embedded melanoma sections were deparaffinized in xylol-isopropanol solution. To expose cryptic antigens, the sections were cooked in citrate buffer (0.1 m citric acid, 0.1 m sodium nitrate) for 10 minutes. Blocking was performed with 10% normal goat serum. The first antibody dilution (p44/42 MAPK, Phospho-p44/42 MAPK; Cell Signaling, Boston, Massachusetts) was 1:200 in 1% BSA. Anti-phospho-p44/42 MAPK specifically recognizes the dually phosphorylated, active form of MAPK (also known as p44/ERK1 and p42/ERK2) enzymes. Incubation was performed for 1 hour at room temperature. The secondary antibody (Dako, Hamburg, Germany) was diluted 1:40 and incubated for 1 hour at room temperature. For signal augmentation, the APAAP complex (Dako) was diluted 1:80 and incubated for 30 minutes at room temperature. As chromogen, new fuchsin development solution was used, and counterstaining was performed using methylene blue solution. Sections known to stain positively were included in each batch, and negative controls were also performed by replacing the primary antibody with mouse or goat ascites fluid (Sigma-Aldrich Biochemicals, St. Louis, Missouri).
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This work was supported by the Bundesministerium für Bildung und Forschung (BMBF), Interdisciplinary Centre for Clinical Research (IZKF) at the University of Leipzig (01KS9504/1, Project D01).
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Weber, A., Hengge, U., Urbanik, D. et al. Absence of Mutations of the BRAF Gene and Constitutive Activation of Extracellular-Regulated Kinase in Malignant Melanomas of the Uvea. Lab Invest 83, 1771–1776 (2003). https://doi.org/10.1097/01.LAB.0000101732.89463.29
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DOI: https://doi.org/10.1097/01.LAB.0000101732.89463.29
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