Featured
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Original Article |
The effect of microbial colonization on the host proteome varies by gastrointestinal location
- Joshua S Lichtman
- , Emily Alsentzer
- & Joshua E Elias
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Original Article |
Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice
- Kirsty Brown
- , Artem Godovannyi
- & Deanna L Gibson
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Original Article
| Open AccessA phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
- Jiachao Zhang
- , Zhuang Guo
- & Heping Zhang
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Original Article |
Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia
- Marius Vital
- , Jiarong Gao
- & James M Tiedje
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Original Article
| Open AccessStructural modulation of gut microbiota during alleviation of type 2 diabetes with a Chinese herbal formula
- Jia Xu
- , Fengmei Lian
- & Xiaolin Tong
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Original Article |
An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile
- Matthew Miezeiewski
- , Todd Schnaufer
- & Jon H Heinrichs
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Original Article |
Early colonizing Esche richia coli elicits remodeling of rat colonic epithelium shifting toward a new homeostatic state
- Julie Tomas
- , Julie Reygner
- & Claire Cherbuy
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Original Article
| Open AccessModulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice
- Jingjing Wang
- , Huang Tang
- & Jian Shen
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Original Article
| Open AccessA single genus in the gut microbiome reflects host preference and specificity
- A Murat Eren
- , Mitchell L Sogin
- & Sandra L McLellan
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Original Article |
From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists
- María Gomariz
- , Manuel Martínez-García
- & Josefa Antón
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Perspective
| Open AccessEcological theory as a foundation to control pathogenic invasion in aquaculture
- Peter De Schryver
- & Olav Vadstein
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Original Article
| Open AccessReprograming of gut microbiome energy metabolism by the FUT2 Crohn’s disease risk polymorphism
- Maomeng Tong
- , Ian McHardy
- & Jonathan Braun
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Original Article |
Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men
- Anne Salonen
- , Leo Lahti
- & Willem M de Vos
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Original Article
| Open AccessMicrobiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
- Amandine Everard
- , Vladimir Lazarevic
- & Patrice D Cani
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Original Article |
Predictive modeling of gingivitis severity and susceptibility via oral microbiota
- Shi Huang
- , Rui Li
- & Jian Xu
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Original Article |
Classification and quantification of bacteriophage taxa in human gut metagenomes
- Alison S Waller
- , Takuji Yamada
- & Peer Bork
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Original Article |
Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection
- Susana Fuentes
- , Els van Nood
- & Willem M de Vos
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Original Article |
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
- Nicole Reichardt
- , Sylvia H Duncan
- & Petra Louis
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Original Article |
Human milk oligosaccharides shorten rotavirus-induced diarrhea and modulate piglet mucosal immunity and colonic microbiota
- Min Li
- , Marcia H Monaco
- & Sharon M Donovan
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Original Article |
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
- Torey Looft
- , Heather K Allen
- & Thaddeus B Stanton
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Original Article
| Open AccessGut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
- Michelle G Rooks
- , Patrick Veiga
- & Wendy S Garrett
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Original Article
| Open AccessLongitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
- Clarissa Schwab
- , David Berry
- & Tim Urich
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Original Article |
Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
- Zhigang Zhang
- , Jiawei Geng
- & Peng Shi
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Original Article |
Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish
- Lin Ye
- , Jon Amberg
- & Wen-Tso Liu
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Original Article |
Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota
- Sunghee Lee
- , Brandi Cantarel
- & GwangPyo Ko
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Original Article |
High-fat diet alters gut microbiota physiology in mice
- Hannelore Daniel
- , Amin Moghaddas Gholami
- & Thomas Clavel
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Original Article |
Kin recognition in Drosophila: the importance of ecology and gut microbiota
- Anne Lizé
- , Raegan McKay
- & Zenobia Lewis
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Commentary |
Functional relationship between Campylobacter concisus and the stomach ecosystem in health and disease
- Nadeem O Kaakoush
- , Si Ming Man
- & Hazel M Mitchell
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Original Article |
A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice
- A Marcobal
- , P C Kashyap
- & J L Sonnenburg
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Original Article |
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
- Adam C-N Wong
- , John M Chaston
- & Angela E Douglas
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Original Article
| Open AccessBiphasic assembly of the murine intestinal microbiota during early development
- Ida Gisela Pantoja-Feliciano
- , Jose C Clemente
- & Maria Gloria Dominguez-Bello
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Original Article |
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes
- Katherine R Amato
- , Carl J Yeoman
- & Steven R Leigh
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Original Article |
Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota
- Erik C von Rosenvinge
- , Yang Song
- & W Florian Fricke
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Original Article |
Exploring the bovine rumen bacterial community from birth to adulthood
- Elie Jami
- , Adi Israel
- & Itzhak Mizrahi
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Short Communication
| Open AccessAn opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice
- Na Fei
- & Liping Zhao
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Original Article |
Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model
- Pieter Van den Abbeele
- , Clara Belzer
- & Tom Van de Wiele
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Original Article |
Microbiota conservation and BMI signatures in adult monozygotic twins
- Sebastian Tims
- , Catherine Derom
- & Erwin G Zoetendal
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Original Article |
Gut bacteria–host metabolic interplay during conventionalisation of the mouse germfree colon
- Sahar El Aidy
- , Muriel Derrien
- & Michiel Kleerebezem
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Original Article |
Host genetic and environmental effects on mouse intestinal microbiota
- James H Campbell
- , Carmen M Foster
- & Mircea Podar
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Original Article |
Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans
- Nina Sanapareddy
- , Ryan M Legge
- & Temitope O Keku
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Original Article |
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
- David Berry
- , Clarissa Schwab
- & Alexander Loy
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Original Article |
Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome
- Eamonn P Culligan
- , Roy D Sleator
- & Colin Hill
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Original Article |
Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations
- Chenhong Zhang
- , Menghui Zhang
- & Liping Zhao
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Winogradsky Review |
Microbes inside—from diversity to function: the case of Akkermansia
- Clara Belzer
- & Willem M de Vos
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Original Article |
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
- Xiaolei Ze
- , Sylvia H Duncan
- & Harry J Flint
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Original Article
| Open AccessExpression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
- Fabian Staubach
- , Sven Künzel
- & Jill M Johnsen
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Original Article |
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
- Erwin G Zoetendal
- , Jeroen Raes
- & Michiel Kleerebezem
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Original Article |
Evidence for a core gut microbiota in the zebrafish
- Guus Roeselers
- , Erika K Mittge
- & John F Rawls