Featured
-
-
Article |
Association of gut microbial communities with plasma lipopolysaccharide-binding protein (LBP) in premenopausal women
We found distinct differences between tertiles of LBP regarding the diversity and composition of the microbiome, as well as differences in functional genes that potentially activate LBP.
- Jessica S Citronberg
- , Keith R Curtis
- & Meredith AJ Hullar
-
Original Article |
The effect of microbial colonization on the host proteome varies by gastrointestinal location
- Joshua S Lichtman
- , Emily Alsentzer
- & Joshua E Elias
-
Original Article |
Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice
- Kirsty Brown
- , Artem Godovannyi
- & Deanna L Gibson
-
Original Article
| Open Access
A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
- Jiachao Zhang
- , Zhuang Guo
- & Heping Zhang
-
Original Article |
Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia
- Marius Vital
- , Jiarong Gao
- & James M Tiedje
-
Original Article
| Open Access
Structural modulation of gut microbiota during alleviation of type 2 diabetes with a Chinese herbal formula
- Jia Xu
- , Fengmei Lian
- & Xiaolin Tong
-
Original Article |
An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile
- Matthew Miezeiewski
- , Todd Schnaufer
- & Jon H Heinrichs
-
Original Article |
Early colonizing Esche richia coli elicits remodeling of rat colonic epithelium shifting toward a new homeostatic state
- Julie Tomas
- , Julie Reygner
- & Claire Cherbuy
-
Original Article
| Open Access
Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice
- Jingjing Wang
- , Huang Tang
- & Jian Shen
-
Original Article
| Open Access
A single genus in the gut microbiome reflects host preference and specificity
- A Murat Eren
- , Mitchell L Sogin
- & Sandra L McLellan
-
Original Article |
From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists
- María Gomariz
- , Manuel Martínez-García
- & Josefa Antón
-
Perspective
| Open Access
Ecological theory as a foundation to control pathogenic invasion in aquaculture
- Peter De Schryver
- & Olav Vadstein
-
Original Article
| Open Access
Reprograming of gut microbiome energy metabolism by the FUT2 Crohn’s disease risk polymorphism
- Maomeng Tong
- , Ian McHardy
- & Jonathan Braun
-
Original Article |
Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men
- Anne Salonen
- , Leo Lahti
- & Willem M de Vos
-
Original Article
| Open Access
Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
- Amandine Everard
- , Vladimir Lazarevic
- & Patrice D Cani
-
Original Article |
Predictive modeling of gingivitis severity and susceptibility via oral microbiota
- Shi Huang
- , Rui Li
- & Jian Xu
-
Original Article |
Classification and quantification of bacteriophage taxa in human gut metagenomes
- Alison S Waller
- , Takuji Yamada
- & Peer Bork
-
Original Article |
Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection
- Susana Fuentes
- , Els van Nood
- & Willem M de Vos
-
Original Article |
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
- Nicole Reichardt
- , Sylvia H Duncan
- & Petra Louis
-
Original Article |
Human milk oligosaccharides shorten rotavirus-induced diarrhea and modulate piglet mucosal immunity and colonic microbiota
- Min Li
- , Marcia H Monaco
- & Sharon M Donovan
-
Original Article |
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
- Torey Looft
- , Heather K Allen
- & Thaddeus B Stanton
-
Original Article
| Open Access
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
- Michelle G Rooks
- , Patrick Veiga
- & Wendy S Garrett
-
Original Article
| Open Access
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
- Clarissa Schwab
- , David Berry
- & Tim Urich
-
Original Article |
Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
- Zhigang Zhang
- , Jiawei Geng
- & Peng Shi
-
Original Article |
Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish
- Lin Ye
- , Jon Amberg
- & Wen-Tso Liu
-
Original Article |
Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota
- Sunghee Lee
- , Brandi Cantarel
- & GwangPyo Ko
-
Original Article |
High-fat diet alters gut microbiota physiology in mice
- Hannelore Daniel
- , Amin Moghaddas Gholami
- & Thomas Clavel
-
Original Article |
Kin recognition in Drosophila: the importance of ecology and gut microbiota
- Anne Lizé
- , Raegan McKay
- & Zenobia Lewis
-
Commentary |
Functional relationship between Campylobacter concisus and the stomach ecosystem in health and disease
- Nadeem O Kaakoush
- , Si Ming Man
- & Hazel M Mitchell
-
Original Article |
A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice
- A Marcobal
- , P C Kashyap
- & J L Sonnenburg
-
Original Article |
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
- Adam C-N Wong
- , John M Chaston
- & Angela E Douglas
-
-
Original Article
| Open Access
Biphasic assembly of the murine intestinal microbiota during early development
- Ida Gisela Pantoja-Feliciano
- , Jose C Clemente
- & Maria Gloria Dominguez-Bello
-
Original Article |
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes
- Katherine R Amato
- , Carl J Yeoman
- & Steven R Leigh
-
Original Article |
Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota
- Erik C von Rosenvinge
- , Yang Song
- & W Florian Fricke
-
Original Article |
Exploring the bovine rumen bacterial community from birth to adulthood
- Elie Jami
- , Adi Israel
- & Itzhak Mizrahi
-
Short Communication
| Open Access
An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice
- Na Fei
- & Liping Zhao
-
Original Article |
Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model
- Pieter Van den Abbeele
- , Clara Belzer
- & Tom Van de Wiele
-
Original Article |
Microbiota conservation and BMI signatures in adult monozygotic twins
- Sebastian Tims
- , Catherine Derom
- & Erwin G Zoetendal
-
Original Article |
Gut bacteria–host metabolic interplay during conventionalisation of the mouse germfree colon
- Sahar El Aidy
- , Muriel Derrien
- & Michiel Kleerebezem
-
Original Article |
Host genetic and environmental effects on mouse intestinal microbiota
- James H Campbell
- , Carmen M Foster
- & Mircea Podar
-
Original Article |
Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans
- Nina Sanapareddy
- , Ryan M Legge
- & Temitope O Keku
-
Original Article |
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
- David Berry
- , Clarissa Schwab
- & Alexander Loy
-
Original Article |
Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome
- Eamonn P Culligan
- , Roy D Sleator
- & Colin Hill
-
Original Article |
Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations
- Chenhong Zhang
- , Menghui Zhang
- & Liping Zhao
-
Winogradsky Review |
Microbes inside—from diversity to function: the case of Akkermansia
- Clara Belzer
- & Willem M de Vos
-
Original Article |
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
- Xiaolei Ze
- , Sylvia H Duncan
- & Harry J Flint
-
Original Article
| Open Access
Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
- Fabian Staubach
- , Sven Künzel
- & Jill M Johnsen
-
Original Article |
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
- Erwin G Zoetendal
- , Jeroen Raes
- & Michiel Kleerebezem
Selective induction of human gut-associated acetogenic/butyrogenic microbiota based on specific microbial colonization of indigestible starch granules
Dysbiosis in inflammatory bowel diseases: the oxygen hypothesis