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Original Article
| Open AccessBreath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation
- Katrine L Whiteson
- , Simone Meinardi
- & Forest Rohwer
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Original Article |
Metabolite transfer with the fermentation product 2,3-butanediol enhances virulence by Pseudomonas aeruginosa
- Arvind Venkataraman
- , Miriam A Rosenbaum
- & Largus T Angenent
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Original Article |
Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
- Zhigang Zhang
- , Jiawei Geng
- & Peng Shi
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Original Article |
Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish
- Lin Ye
- , Jon Amberg
- & Wen-Tso Liu
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Original Article |
Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota
- Sunghee Lee
- , Brandi Cantarel
- & GwangPyo Ko
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Original Article |
High-fat diet alters gut microbiota physiology in mice
- Hannelore Daniel
- , Amin Moghaddas Gholami
- & Thomas Clavel
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Original Article |
Kin recognition in Drosophila: the importance of ecology and gut microbiota
- Anne Lizé
- , Raegan McKay
- & Zenobia Lewis
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Commentary |
Functional relationship between Campylobacter concisus and the stomach ecosystem in health and disease
- Nadeem O Kaakoush
- , Si Ming Man
- & Hazel M Mitchell
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Original Article |
A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice
- A Marcobal
- , P C Kashyap
- & J L Sonnenburg
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Original Article |
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
- Adam C-N Wong
- , John M Chaston
- & Angela E Douglas
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Original Article
| Open AccessBiphasic assembly of the murine intestinal microbiota during early development
- Ida Gisela Pantoja-Feliciano
- , Jose C Clemente
- & Maria Gloria Dominguez-Bello
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Original Article
| Open AccessThe unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia
- Andrea M Sass
- , Crystal Schmerk
- & Eshwar Mahenthiralingam
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Original Article |
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes
- Katherine R Amato
- , Carl J Yeoman
- & Steven R Leigh
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Original Article |
Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota
- Erik C von Rosenvinge
- , Yang Song
- & W Florian Fricke
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Original Article |
Exploring the bovine rumen bacterial community from birth to adulthood
- Elie Jami
- , Adi Israel
- & Itzhak Mizrahi
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Original Article |
The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation
- Loreto Abusleme
- , Amanda K Dupuy
- & Patricia I Diaz
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Original Article |
A novel approach, based on BLSOMs (Batch Learning Self-Organizing Maps), to the microbiome analysis of ticks
- Ryo Nakao
- , Takashi Abe
- & Chihiro Sugimoto
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Short Communication
| Open AccessAn opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice
- Na Fei
- & Liping Zhao
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Original Article |
Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model
- Pieter Van den Abbeele
- , Clara Belzer
- & Tom Van de Wiele
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Original Article |
Microbiota conservation and BMI signatures in adult monozygotic twins
- Sebastian Tims
- , Catherine Derom
- & Erwin G Zoetendal
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Original Article |
Reducing bias in bacterial community analysis of lower respiratory infections
- Geraint B Rogers
- , Leah Cuthbertson
- & Christopher J van der Gast
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Original Article |
Gut bacteria–host metabolic interplay during conventionalisation of the mouse germfree colon
- Sahar El Aidy
- , Muriel Derrien
- & Michiel Kleerebezem
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Original Article |
Gut microbiome composition is linked to whole grain-induced immunological improvements
- Inés Martínez
- , James M Lattimer
- & Jens Walter
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Original Article |
Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents
- Martin J Blaser
- , Maria G Dominguez-Bello
- & Rob Knight
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Original Article |
Host genetic and environmental effects on mouse intestinal microbiota
- James H Campbell
- , Carmen M Foster
- & Mircea Podar
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Original Article |
Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans
- Nina Sanapareddy
- , Ryan M Legge
- & Temitope O Keku
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Original Article |
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
- David Berry
- , Clarissa Schwab
- & Alexander Loy
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Original Article |
Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome
- Eamonn P Culligan
- , Roy D Sleator
- & Colin Hill
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Original Article |
Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations
- Chenhong Zhang
- , Menghui Zhang
- & Liping Zhao
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Winogradsky Review |
Microbes inside—from diversity to function: the case of Akkermansia
- Clara Belzer
- & Willem M de Vos
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Original Article |
Archaea in metazoan diets: implications for food webs and biogeochemical cycling
- Andrew R Thurber
- , Lisa A Levin
- & Jeffrey J Marlow
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Original Article |
The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic–anoxic interphases
- M Tanweer Khan
- , Sylvia H Duncan
- & Hermie J M Harmsen
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Original Article |
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
- Xiaolei Ze
- , Sylvia H Duncan
- & Harry J Flint
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Original Article |
Biogeochemical conditions determine virulence of black band disease in corals
- Martin S Glas
- , Yui Sato
- & David G Bourne
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Original Article
| Open AccessExpression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
- Fabian Staubach
- , Sven Künzel
- & Jill M Johnsen
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Original Article |
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
- Erwin G Zoetendal
- , Jeroen Raes
- & Michiel Kleerebezem
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Original Article |
Evidence for a core gut microbiota in the zebrafish
- Guus Roeselers
- , Erika K Mittge
- & John F Rawls
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Original Article |
Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing
- Pei-Ying Hong
- , Emily Wheeler
- & Roderick I Mackie
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Original Article |
Ovine pedomics: the first study of the ovine foot 16S rRNA-based microbiome
- Leo A Calvo-Bado
- , Brian B Oakley
- & Elizabeth MH Wellington
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Original Article |
Within-host competition determines reproductive success of temperate bacteriophages
- Dominik Refardt
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Original Article |
RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture
- Adam Z Rosenthal
- , Eric G Matson
- & Jared R Leadbetter
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Original Article |
Structure and functions of exopolysaccharide produced by gut commensal Lactobacillus reuteri 100-23
- Ian M Sims
- , Steven A Frese
- & Gerald W Tannock
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Original Article
| Open AccessPartitioning core and satellite taxa from within cystic fibrosis lung bacterial communities
- Christopher J van der Gast
- , Alan W Walker
- & Kenneth D Bruce
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Original Article |
Numerical ecology validates a biogeographical distribution and gender-based effect on mucosa-associated bacteria along the human colon
- Daniel Aguirre de Cárcer
- , Páraic Ó Cuív
- & Mark Morrison
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Original Article |
Spatial organization of intestinal microbiota in the mouse ascending colon
- Gerardo M Nava
- , Hans J Friedrichsen
- & Thaddeus S Stappenbeck
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Original Article |
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice
- Kelly S Swanson
- , Scot E Dowd
- & George C Fahey Jr
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Original Article |
Structure of the human gastric bacterial community in relation to Helicobacter pylori status
- Ana Maldonado-Contreras
- , Kate C Goldfarb
- & Maria G Dominguez-Bello
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Original Article |
Transmission dynamics of an emerging infectious disease in wildlife through host reproductive cycles
- Kimiko Uchii
- , Arndt Telschow
- & Zen'ichiro Kawabata