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Mining chicken ileal microbiota for immunomodulatory microorganisms
- Yan Liu
- , Yuqing Feng
- & Dan Liu
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Article
| Open AccessImpact of host age on viral and bacterial communities in a waterbird population
- Sarah C. Hill
- , Sarah François
- & Oliver G. Pybus
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Article |
Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by Citrobacter rodentium
- Sarah E. Woodward
- , Stefanie L. Vogt
- & B. Brett Finlay
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Article
| Open AccessDissecting microbial communities and resistomes for interconnected humans, soil, and livestock
- Alexandre Maciel-Guerra
- , Michelle Baker
- & Tania Dottorini
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Article
| Open AccessHuman gut-microbiome-derived propionate coordinates proteasomal degradation via HECTD2 upregulation to target EHMT2 in colorectal cancer
- Tae Young Ryu
- , Kwangho Kim
- & Hyun-Soo Cho
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Article
| Open AccessRole of the flagellar hook in the structural development and antibiotic tolerance of Pseudomonas aeruginosa biofilms
- Jules D. P. Valentin
- , Hervé Straub
- & Qun Ren
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Article
| Open AccessAltered metabolome and microbiome features provide clues in understanding irritable bowel syndrome and depression comorbidity
- Lijuan Han
- , Ling Zhao
- & Xiaodong Fang
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Association of bacterial community types, functional microbial processes and lung disease in cystic fibrosis airways
- Stefanie Widder
- , Jiangchao Zhao
- & John J. LiPuma
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Article
| Open AccessInter-species interactions alter antibiotic efficacy in bacterial communities
- Michael J. Bottery
- , Jessica L. Matthews
- & Ville-Petri Friman
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Article
| Open AccessFecal filtrate transplantation protects against necrotizing enterocolitis
- Anders Brunse
- , Ling Deng
- & Thomas Thymann
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Non-diphtheriae Corynebacterium species are associated with decreased risk of pneumococcal colonization during infancy
- Matthew S. Kelly
- , Catherine Plunkett
- & Patrick C. Seed
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Brief Communication |
Conserved bacterial de novo guanine biosynthesis pathway enables microbial survival and colonization in the environmental niche of the urinary tract
- Deepak S. Ipe
- , Matthew J. Sullivan
- & Glen C. Ulett
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Article |
Cervicovaginal bacterial communities in reproductive-aged Tanzanian women with Schistosoma mansoni, Schistosoma haematobium, or without schistosome infection
- Brooke W. Bullington
- , Myung Hee Lee
- & Jennifer A. Downs
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Article |
Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota
- Kate A. Sabey
- , Se Jin Song
- & Vanessa O. Ezenwa
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Article
| Open AccessMetabolic modeling predicts specific gut bacteria as key determinants for Candida albicans colonization levels
- Mohammad H. Mirhakkak
- , Sascha Schäuble
- & Gianni Panagiotou
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Article
| Open AccessMucin-derived O-glycans supplemented to diet mitigate diverse microbiota perturbations
- K. M. Pruss
- , A. Marcobal
- & J. L. Sonnenburg
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Brief Communication |
Cytometric fingerprints of gut microbiota predict Crohn’s disease state
- Peter Rubbens
- , Ruben Props
- & Willem Waegeman
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Article |
Fish oil supplementation reduces maternal defensive inflammation and predicts a gut bacteriome with reduced immune priming capacity in infants
- Candice Quin
- , Deanna M. Vollman
- & Deanna L. Gibson
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Article |
The gut microbiota contributes to the development of Staphylococcus aureus-induced mastitis in mice
- Xiaoyu Hu
- , Jian Guo
- & Naisheng Zhang
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Article |
The relationship between fecal bile acids and microbiome community structure in pediatric Crohn’s disease
- Jessica Connors
- , Katherine A Dunn
- & Johan Van Limbergen
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Article |
The subgingival microbiome associated with periodontitis in type 2 diabetes mellitus
- Baochen Shi
- , Renate Lux
- & Huiying Li
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Article
| Open AccessUntangling the dynamics of persistence and colonization in microbial communities
- Sylvia L. Ranjeva
- , Joseph R. Mihaljevic
- & Greg Dwyer
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Microbiome analysis as a platform R&D tool for parasitic nematode disease management
- Glenn Hogan
- , Sidney Walker
- & Dave J. Bartley
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Article |
Interplay between gut microbiota metabolism and inflammation in HIV infection
- Jorge F. Vázquez-Castellanos
- , Sergio Serrano-Villar
- & María José Gosalbes
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Article
| Open AccessOral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy
- Casey Chen
- , Chris Hemme
- & Jizhong Zhou
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Original Article |
Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs
- Bram Flahou
- , Mirko Rossi
- & Freddy Haesebrouck
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Original Article
| Open AccessA tale of two risks: smoking, diabetes and the subgingival microbiome
- Sukirth M Ganesan
- , Vinayak Joshi
- & Purnima S Kumar
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Original Article |
Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation
- Susana Fuentes
- , Noortje G Rossen
- & Cyriel Y Ponsioen
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Original Article |
Environmental spread of microbes impacts the development of metabolic phenotypes in mice transplanted with microbial communities from humans
- Li Zhang
- , Martin Iain Bahl
- & Tine Rask Licht
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Original Article |
Interleukin-15 promotes intestinal dysbiosis with butyrate deficiency associated with increased susceptibility to colitis
- Marlies Meisel
- , Toufic Mayassi
- & Dionysios A Antonopoulos
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Short Communication |
The fermentation product 2,3-butanediol alters P. aeruginosa clearance, cytokine response and the lung microbiome
- Mytien Nguyen
- , Anurag Sharma
- & Stefan Worgall
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Original Article
| Open AccessMicrobial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome
- Robert A Quinn
- , Vanessa V Phelan
- & Forest L Rohwer
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Original Article
| Open AccessSynbiotic approach restores intestinal homeostasis and prolongs survival in leukaemic mice with cachexia
- Laure B Bindels
- , Audrey M Neyrinck
- & Nathalie M Delzenne
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Original Article |
Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice
- Kirsty Brown
- , Artem Godovannyi
- & Deanna L Gibson
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Original Article |
Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients
- Wouter A A de Steenhuijsen Piters
- , Elisabeth G W Huijskens
- & Debby Bogaert
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Original Article |
Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses
- David Rojo
- , María J Gosalbes
- & Andrés Moya
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Short Communication |
The networks of human gut microbe–metabolite associations are different between health and irritable bowel syndrome
- Vijay Shankar
- , Daniel Homer
- & Oleg Paliy
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Original Article |
Diverse protist grazers select for virulence-related traits in Legionella
- Francisco Amaro
- , Wen Wang
- & Howard A Shuman
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Original Article |
A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation
- Robert A Quinn
- , Katrine Whiteson
- & Forest Rohwer
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Original Article
| Open AccessStructural modulation of gut microbiota during alleviation of type 2 diabetes with a Chinese herbal formula
- Jia Xu
- , Fengmei Lian
- & Xiaolin Tong
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Short Communication
| Open AccessViunalikeviruses are environmentally common agents of horizontal gene transfer in pathogens and biocontrol bacteria
- Miguel A Matilla
- , Xinzhe Fang
- & George PC Salmond
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Original Article |
Predominant pathogen competition and core microbiota divergence in chronic airway infection
- Geraint B Rogers
- , Christopher J van der Gast
- & David J Serisier
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Original Article |
An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile
- Matthew Miezeiewski
- , Todd Schnaufer
- & Jon H Heinrichs
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Short Communication
| Open AccessThe subgingival microbiome of clinically healthy current and never smokers
- Matthew R Mason
- , Philip M Preshaw
- & Purnima S Kumar
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Original Article
| Open AccessModulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice
- Jingjing Wang
- , Huang Tang
- & Jian Shen
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Original Article |
Distinct signatures of host–microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet
- Alesia Walker
- , Barbara Pfitzner
- & Philippe Schmitt-Kopplin
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Original Article
| Open AccessReprograming of gut microbiome energy metabolism by the FUT2 Crohn’s disease risk polymorphism
- Maomeng Tong
- , Ian McHardy
- & Jonathan Braun
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Original Article
| Open AccessMicrobiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
- Amandine Everard
- , Vladimir Lazarevic
- & Patrice D Cani
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