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Original Article |
Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation
- Susana Fuentes
- , Noortje G Rossen
- & Cyriel Y Ponsioen
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Original Article
| Open AccessBacteria isolated from lung modulate asthma susceptibility in mice
- Aude Remot
- , Delphyne Descamps
- & Muriel Thomas
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Original Article |
Environmental spread of microbes impacts the development of metabolic phenotypes in mice transplanted with microbial communities from humans
- Li Zhang
- , Martin Iain Bahl
- & Tine Rask Licht
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Original Article |
Interleukin-15 promotes intestinal dysbiosis with butyrate deficiency associated with increased susceptibility to colitis
- Marlies Meisel
- , Toufic Mayassi
- & Dionysios A Antonopoulos
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Short Communication |
The fermentation product 2,3-butanediol alters P. aeruginosa clearance, cytokine response and the lung microbiome
- Mytien Nguyen
- , Anurag Sharma
- & Stefan Worgall
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Short Communication
| Open AccessTemperate phages enhance pathogen fitness in chronic lung infection
- Emily V Davies
- , Chloe E James
- & Craig Winstanley
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Original Article |
Cigarette smoking and the oral microbiome in a large study of American adults
- Jing Wu
- , Brandilyn A Peters
- & Jiyoung Ahn
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Original Article
| Open AccessMicrobial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome
- Robert A Quinn
- , Vanessa V Phelan
- & Forest L Rohwer
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Original Article
| Open AccessSynbiotic approach restores intestinal homeostasis and prolongs survival in leukaemic mice with cachexia
- Laure B Bindels
- , Audrey M Neyrinck
- & Nathalie M Delzenne
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Original Article |
The effect of microbial colonization on the host proteome varies by gastrointestinal location
- Joshua S Lichtman
- , Emily Alsentzer
- & Joshua E Elias
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Original Article
| Open AccessRespiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention
- Leah Cuthbertson
- , Geraint B Rogers
- & Christopher J van der Gast
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Original Article |
Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children
- Jing Cheng
- , Tamar Ringel-Kulka
- & Reetta Satokari
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Original Article
| Open AccessLactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants
- Roberto Berni Canani
- , Naseer Sangwan
- & Cathryn R Nagler
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Original Article |
Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice
- Kirsty Brown
- , Artem Godovannyi
- & Deanna L Gibson
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Original Article |
Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients
- Wouter A A de Steenhuijsen Piters
- , Elisabeth G W Huijskens
- & Debby Bogaert
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Original Article
| Open AccessComposition and temporal stability of the gut microbiota in older persons
- Ian B Jeffery
- , Denise B Lynch
- & Paul W O'Toole
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Mini Review |
Monitoring host responses to the gut microbiota
- Joshua S Lichtman
- , Justin L Sonnenburg
- & Joshua E Elias
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Original Article |
Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses
- David Rojo
- , María J Gosalbes
- & Andrés Moya
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Original Article
| Open AccessA phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
- Jiachao Zhang
- , Zhuang Guo
- & Heping Zhang
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Short Communication |
The networks of human gut microbe–metabolite associations are different between health and irritable bowel syndrome
- Vijay Shankar
- , Daniel Homer
- & Oleg Paliy
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Original Article |
Diverse protist grazers select for virulence-related traits in Legionella
- Francisco Amaro
- , Wen Wang
- & Howard A Shuman
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Original Article |
A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation
- Robert A Quinn
- , Katrine Whiteson
- & Forest Rohwer
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Original Article |
Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia
- Marius Vital
- , Jiarong Gao
- & James M Tiedje
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Original Article
| Open AccessStructural modulation of gut microbiota during alleviation of type 2 diabetes with a Chinese herbal formula
- Jia Xu
- , Fengmei Lian
- & Xiaolin Tong
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Short Communication
| Open AccessViunalikeviruses are environmentally common agents of horizontal gene transfer in pathogens and biocontrol bacteria
- Miguel A Matilla
- , Xinzhe Fang
- & George PC Salmond
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Original Article |
An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile
- Matthew Miezeiewski
- , Todd Schnaufer
- & Jon H Heinrichs
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Original Article |
Predominant pathogen competition and core microbiota divergence in chronic airway infection
- Geraint B Rogers
- , Christopher J van der Gast
- & David J Serisier
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Short Communication
| Open AccessThe subgingival microbiome of clinically healthy current and never smokers
- Matthew R Mason
- , Philip M Preshaw
- & Purnima S Kumar
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Original Article |
Early colonizing Esche richia coli elicits remodeling of rat colonic epithelium shifting toward a new homeostatic state
- Julie Tomas
- , Julie Reygner
- & Claire Cherbuy
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Original Article
| Open AccessModulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice
- Jingjing Wang
- , Huang Tang
- & Jian Shen
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Original Article
| Open AccessA single genus in the gut microbiome reflects host preference and specificity
- A Murat Eren
- , Mitchell L Sogin
- & Sandra L McLellan
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Original Article |
From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists
- María Gomariz
- , Manuel Martínez-García
- & Josefa Antón
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Original Article |
Distinct signatures of host–microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet
- Alesia Walker
- , Barbara Pfitzner
- & Philippe Schmitt-Kopplin
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Perspective
| Open AccessEcological theory as a foundation to control pathogenic invasion in aquaculture
- Peter De Schryver
- & Olav Vadstein
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Original Article |
Cross-feeding and interkingdom communication in dual-species biofilms of Streptococcus mutans and Candida albicans
- Helena Sztajer
- , Szymon P Szafranski
- & Irene Wagner-Döbler
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Original Article
| Open AccessReprograming of gut microbiome energy metabolism by the FUT2 Crohn’s disease risk polymorphism
- Maomeng Tong
- , Ian McHardy
- & Jonathan Braun
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Original Article |
Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men
- Anne Salonen
- , Leo Lahti
- & Willem M de Vos
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Original Article
| Open AccessMicrobiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
- Amandine Everard
- , Vladimir Lazarevic
- & Patrice D Cani
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Original Article |
Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients
- Yan Li
- , Jinzhi He
- & Xuedong Zhou
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Original Article |
Predictive modeling of gingivitis severity and susceptibility via oral microbiota
- Shi Huang
- , Rui Li
- & Jian Xu
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Original Article |
Human oral viruses are personal, persistent and gender-consistent
- Shira R Abeles
- , Refugio Robles-Sikisaka
- & David T Pride
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Original Article |
Classification and quantification of bacteriophage taxa in human gut metagenomes
- Alison S Waller
- , Takuji Yamada
- & Peer Bork
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Original Article |
Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women
- Hanneke Borgdorff
- , Evgeni Tsivtsivadze
- & Janneke HHM van de Wijgert
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Original Article |
Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis
- Ana E Duran-Pinedo
- , Tsute Chen
- & Jorge Frias-Lopez
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Original Article |
Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection
- Susana Fuentes
- , Els van Nood
- & Willem M de Vos
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Original Article |
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
- Nicole Reichardt
- , Sylvia H Duncan
- & Petra Louis
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Original Article |
Human milk oligosaccharides shorten rotavirus-induced diarrhea and modulate piglet mucosal immunity and colonic microbiota
- Min Li
- , Marcia H Monaco
- & Sharon M Donovan
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Original Article |
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
- Torey Looft
- , Heather K Allen
- & Thaddeus B Stanton
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Original Article
| Open AccessGut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
- Michelle G Rooks
- , Patrick Veiga
- & Wendy S Garrett