Featured
-
-
Article |
Extrachromosomal circular elements targeted by CRISPR-Cas in Dehalococcoides mccartyi are linked to mobilization of reductive dehalogenase genes
- Olivia Molenda
- , Shuiquan Tang
- & Elizabeth A. Edwards
-
Article
| Open AccessEndosymbiont genomes yield clues of tubeworm success
- Yuanning Li
- , Mark R. Liles
- & Kenneth M. Halanych
-
Article |
Specialized plant biochemistry drives gene clustering in fungi
- Emile Gluck-Thaler
- & Jason C. Slot
-
Article |
Novel hydrogenases from deep-sea hydrothermal vent metagenomes identified by a recently developed activity-based screen
- Nicole Adam
- & Mirjam Perner
-
Short Communication
| Open AccessRecent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum
- Jit Ern Chen
- , Guoxin Cui
- & Manuel Aranda
-
Original Article |
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
- Stefan M Neuenschwander
- , Rohit Ghai
- & Michaela M Salcher
-
Original Article |
Tremblaya phenacola PPER: an evolutionary beta-gammaproteobacterium collage
- Rosario Gil
- , Carlos Vargas-Chavez
- & Andrés Moya
-
Original Article |
Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria
- Julien Tremblay
- , Etienne Yergeau
- & Charles W Greer
-
Perspective
| Open AccessExact sequence variants should replace operational taxonomic units in marker-gene data analysis
- Benjamin J Callahan
- , Paul J McMurdie
- & Susan P Holmes
-
Original Article
| Open AccessA genomic perspective on stoichiometric regulation of soil carbon cycling
- Wyatt H Hartman
- , Rongzhong Ye
- & Susannah G Tringe
-
Winogradsky Review |
Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations
- Richard E Lenski
-
Original Article
| Open AccessGenomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen
- Francisca HID Segers
- , Lucie Kešnerová
- & Philipp Engel
-
Original Article |
Mixed transmission modes and dynamic genome evolution in an obligate animal–bacterial symbiosis
- Shelbi L Russell
- , Russell B Corbett-Detig
- & Colleen M Cavanaugh
-
Original Article |
A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements
- Fanny E Hartmann
- , Andrea Sánchez-Vallet
- & Daniel Croll
-
Original Article |
Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection
- Li-Guan Li
- , Yu Xia
- & Tong Zhang
-
Original Article |
Metagenomic covariation along densely sampled environmental gradients in the Red Sea
- Luke R Thompson
- , Gareth J Williams
- & Ulrich Stingl
-
Original Article
| Open AccessRegulatory (pan-)genome of an obligate intracellular pathogen in the PVC superphylum
- Marie de Barsy
- , Antonio Frandi
- & Patrick H Viollier
-
Original Article |
Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics
- Pascale Flury
- , Nora Aellen
- & Monika Maurhofer
-
Original Article
| Open AccessReverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
- Magali Lescot
- , Pascal Hingamp
- & Hiroyuki Ogata
-
Original Article
| Open AccessRapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections
- Bethany L Dearlove
- , Alison J Cody
- & Samuel K Sheppard
-
Short Communication
| Open AccessProDeGe: a computational protocol for fully automated decontamination of genomes
- Kristin Tennessen
- , Evan Andersen
- & Amrita Pati
-
Original Article |
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution
- Joran Martijn
- , Frederik Schulz
- & Thijs J G Ettema
-
Short Communication
| Open AccessGenomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone
- Marcia Astorga-Eló
- , Salvador Ramírez-Flandes
- & Osvaldo Ulloa
-
Original Article |
Metatranscriptomics of N2-fixing cyanobacteria in the Amazon River plume
- Jason A Hilton
- , Brandon M Satinsky
- & Jonathan P Zehr
-
Original Article
| Open AccessEcological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics
- Zheng-Shuang Hua
- , Yu-Jiao Han
- & Wen-Sheng Shu
-
Original Article |
Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence
- Hisaya Kojima
- , Yoshitoshi Ogura
- & Manabu Fukui
-
Original Article
| Open AccessGenomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities
- Chris L Dupont
- , John P McCrow
- & Andrew E Allen
-
Original Article |
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount
- Erin K Field
- , Alexander Sczyrba
- & David Emerson
-
Original Article
| Open AccessComparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease
- Akiko Endo
- , Takayasu Watanabe
- & Ichiro Nakagawa
-
Original Article |
Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea
- David Kamanda Ngugi
- , Jochen Blom
- & Ulrich Stingl
-
Original Article |
Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics
- Martin Grube
- , Tomislav Cernava
- & Gabriele Berg
-
Original Article |
Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata
- Collin J Closek
- , Shinichi Sunagawa
- & Mónica Medina
-
Short Communication |
Effects of sample treatments on genome recovery via single-cell genomics
- Scott Clingenpeel
- , Patrick Schwientek
- & Tanja Woyke
-
Original Article |
Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis
- Morgan M Steffen
- , Stephen P Dearth
- & Steven W Wilhelm
-
Original Article |
Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing
- Alexander S Beliaev
- , Margie F Romine
- & Allan Konopka
-
Original Article |
Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity
- Karsten Voigt
- , Cynthia M Sharma
- & Claudia Steglich
-
Original Article
| Open AccessSecondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom
- Kevin Penn
- , Jia Wang
- & Janelle R Thompson
-
Original Article |
Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis
- Ana E Duran-Pinedo
- , Tsute Chen
- & Jorge Frias-Lopez
-
Original Article |
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
- Nicole Reichardt
- , Sylvia H Duncan
- & Petra Louis
-
Original Article |
Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
- J Cameron Thrash
- , Ben Temperton
- & Stephan J Giovannoni
-
Original Article |
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community
- Mallory Embree
- , Harish Nagarajan
- & Karsten Zengler
-
Original Article |
The (d)evolution of methanotrophy in the Beijerinckiaceae—a comparative genomics analysis
- Ivica Tamas
- , Angela V Smirnova
- & Peter F Dunfield
-
Original Article |
Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae
- Ilias Lagkouvardos
- , Thomas Weinmaier
- & Matthias Horn
-
Original Article |
Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
- Adam R Rivers
- , Shalabh Sharma
- & Mary Ann Moran
-
Original Article |
Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
- Jason J Flowers
- , Shaomei He
- & Katherine D McMahon
-
Original Article |
Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants
- Thomas R Turner
- , Karunakaran Ramakrishnan
- & Philip S Poole
-
Original Article |
Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling
- Brett J Baker
- , Cody S Sheik
- & Gregory J Dick
-
Original Article
| Open AccessMetatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts
- J G Sanders
- , R A Beinart
- & P R Girguis
-
Original Article |
Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes
- Amy E Zimmerman
- , Adam C Martiny
- & Steven D Allison