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Article
| Open AccessMetabolic resource overlap impacts competition among phyllosphere bacteria
- Rudolf O. Schlechter
- , Evan J. Kear
- & Mitja N. P. Remus-Emsermann
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Article
| Open AccessRelation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens
- Daniel Garrido-Sanz
- , Pilar Vesga
- & Jordan Vacheron
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Article
| Open AccessMarine picocyanobacterial PhnD1 shows specificity for various phosphorus sources but likely represents a constitutive inorganic phosphate transporter
- Bhumika S. Shah
- , Benjamin A. Ford
- & Ian T. Paulsen
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Article
| Open AccessGenomic diversity and biosynthetic capabilities of sponge-associated chlamydiae
- Jennah E. Dharamshi
- , Natalia Gaarslev
- & Thijs J. G. Ettema
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Article |
Genomic insights into the phylogeny and biomass-degrading enzymes of rumen ciliates
- Zongjun Li
- , Xiangnan Wang
- & Yu Jiang
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Article
| Open Accessα-cyanobacteria possessing form IA RuBisCO globally dominate aquatic habitats
- Pedro J. Cabello-Yeves
- , David J. Scanlan
- & Richard J. Puxty
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Article |
Mobile genetic elements used by competing coral microbial populations increase genomic plasticity
- Pengxia Wang
- , Yi Zhao
- & Xiaoxue Wang
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Article
| Open AccessConvergent evolution of a labile nutritional symbiosis in ants
- Raphaella Jackson
- , David Monnin
- & Lee M. Henry
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Article
| Open AccessLineage-specific energy and carbon metabolism of sponge symbionts and contributions to the host carbon pool
- I. Burgsdorf
- , S. Sizikov
- & L. Steindler
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Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage
- Stefan Kusch
- , Justine Larrouy
- & Sylvain Raffaele
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Article
| Open AccessNiche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans
- Jaqueline Hess
- , Sudhagar V. Balasundaram
- & Inger Skrede
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Rapid diversification of wild social groups driven by toxin-immunity loci on mobile genetic elements
- Christopher N. Vassallo
- , Vera Troselj
- & Daniel Wall
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Article
| Open AccessParallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut
- Mariko Takeuchi
- , Hirokazu Kuwahara
- & Yuichi Hongoh
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Article |
Unlinked rRNA genes are widespread among bacteria and archaea
- Tess E. Brewer
- , Mads Albertsen
- & Noah Fierer
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Article |
Anion transport as a target of adaption to perchlorate in sulfate-reducing communities
- Magdalena K. Stoeva
- , Jennifer Kuehl
- & John D. Coates
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Article |
A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum
- Achal Rastogi
- , Fabio Rocha Jimenez Vieira
- & Leila Tirichine
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Article
| Open AccessSerial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids’ di-symbiotic systems
- Alejandro Manzano-Marı́n
- , Armelle Coeur d’acier
- & Emmanuelle Jousselin
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Article
| Open AccessGenomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts
- Yi Yang
- , Jin Sun
- & Pei-Yuan Qian
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Article
| Open AccessUneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
- Amanda N. Shelton
- , Erica C. Seth
- & Michiko E. Taga
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Article
| Open AccessEndosymbiont genomes yield clues of tubeworm success
- Yuanning Li
- , Mark R. Liles
- & Kenneth M. Halanych
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Article |
Specialized plant biochemistry drives gene clustering in fungi
- Emile Gluck-Thaler
- & Jason C. Slot
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Original Article |
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
- Stefan M Neuenschwander
- , Rohit Ghai
- & Michaela M Salcher
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Original Article |
Tremblaya phenacola PPER: an evolutionary beta-gammaproteobacterium collage
- Rosario Gil
- , Carlos Vargas-Chavez
- & Andrés Moya
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Original Article
| Open AccessGenomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen
- Francisca HID Segers
- , Lucie Kešnerová
- & Philipp Engel
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Original Article |
Mixed transmission modes and dynamic genome evolution in an obligate animal–bacterial symbiosis
- Shelbi L Russell
- , Russell B Corbett-Detig
- & Colleen M Cavanaugh
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Original Article |
A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements
- Fanny E Hartmann
- , Andrea Sánchez-Vallet
- & Daniel Croll
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Original Article |
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution
- Joran Martijn
- , Frederik Schulz
- & Thijs J G Ettema
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Short Communication
| Open AccessGenomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone
- Marcia Astorga-Eló
- , Salvador Ramírez-Flandes
- & Osvaldo Ulloa
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Original Article |
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount
- Erin K Field
- , Alexander Sczyrba
- & David Emerson
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Original Article |
Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea
- David Kamanda Ngugi
- , Jochen Blom
- & Ulrich Stingl
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Original Article |
Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics
- Martin Grube
- , Tomislav Cernava
- & Gabriele Berg
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Original Article |
Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
- J Cameron Thrash
- , Ben Temperton
- & Stephan J Giovannoni
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Original Article |
In and out: an analysis of epibiotic vs periplasmic bacterial predators
- Z Pasternak
- , M Njagi
- & E Jurkevitch
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Original Article |
The (d)evolution of methanotrophy in the Beijerinckiaceae—a comparative genomics analysis
- Ivica Tamas
- , Angela V Smirnova
- & Peter F Dunfield
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Original Article |
Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
- Jason J Flowers
- , Shaomei He
- & Katherine D McMahon
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Original Article |
Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits
- David Goudenège
- , Yannick Labreuche
- & Frédérique Le Roux
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Original Article |
Ecology of marine Bacteroidetes: a comparative genomics approach
- Beatriz Fernández-Gómez
- , Michael Richter
- & Carlos Pedrós-Alió
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Original Article |
By their genes ye shall know them: genomic signatures of predatory bacteria
- Zohar Pasternak
- , Shmuel Pietrokovski
- & Edouard Jurkevitch
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Original Article
| Open AccessA small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus
- Lisa C Crossman
- , Huan Chen
- & O Colin Stine
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Commentary |
Describing microbial communities and performing global comparisons in the ‘omic era
- Tom O Delmont
- , Pascal Simonet
- & Timothy M Vogel
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Original Article |
Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life
- Sebastian Thole
- , Daniela Kalhoefer
- & Thorsten Brinkhoff
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Original Article |
Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions
- Gregor Gierga
- , Björn Voss
- & Wolfgang R Hess
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Original Article |
Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray
- Patrick K H Lee
- , Dan Cheng
- & Lisa Alvarez-Cohen
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Original Article |
Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries
- Wei Xie
- , Fengping Wang
- & Anlong Xu
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Original Article |
Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913
- Qi-Long Qin
- , Yang Li
- & Yu-Zhong Zhang
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Original Article |
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
- Achim Quaiser
- , Yvan Zivanovic
- & Purificación López-García
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Original Article |
Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea
- Alejandro Caro-Quintero
- , Jie Deng
- & Konstantinos T Konstantinidis
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Original Article |
Comparison of multiple metagenomes using phylogenetic networks based on ecological indices
- Suparna Mitra
- , Jack A Gilbert
- & Daniel H Huson
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Short Communication |
Average genome size: a potential source of bias in comparative metagenomics
- Bánk Beszteri
- , Ben Temperton
- & Stephen J Giovannoni