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Seeking active RubisCOs from the currently uncultured microbial majority colonizing deep-sea hydrothermal vent environments
- Stefanie Böhnke
- & Mirjam Perner
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Article
| Open AccessPyrethroid exposure alters internal and cuticle surface bacterial communities in Anopheles albimanus
- Nsa Dada
- , Juan C. Lol
- & Audrey Lenhart
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Molecular mechanisms of temperature acclimation and adaptation in marine diatoms
- Yue Liang
- , Julie A. Koester
- & Zoe V. Finkel
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Article
| Open AccessRethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults
- Jonathan N. V. Martinson
- , Nicholas V. Pinkham
- & Seth T. Walk
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Article
| Open AccessUnraveling the biophysical underpinnings to the success of multispecies biofilms in porous environments
- David Scheidweiler
- , Hannes Peter
- & Tom J. Battin
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Article
| Open AccessThe mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”
- Cristiana Callieri
- , Violeta Slabakova
- & Snejana Moncheva
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The gut microbiota is largely independent of host genetics in regulating fat deposition in chickens
- Chaoliang Wen
- , Wei Yan
- & Ning Yang
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
- Baojun Wu
- , Jill Gaskell
- & David S. Hibbett
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Article
| Open AccessDivergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi
- Joel A. Boyd
- , Sean P. Jungbluth
- & Gene W. Tyson
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| Open AccessFueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts
- Maxim Rubin-Blum
- , Chakkiath Paul Antony
- & Nicole Dubilier
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Brief Communication
| Open AccessGenetic basis for the establishment of endosymbiosis in Paramecium
- Ming He
- , Jinfeng Wang
- & Miao Miao
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Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate
- José M. González
- , Laura Hernández
- & Carlos Pedrós-Alió
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Article
| Open AccessUneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
- Amanda N. Shelton
- , Erica C. Seth
- & Michiko E. Taga
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Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85–90 °N
- Beatriz Fernández-Gómez
- , Beatriz Díez
- & Pauline Snoeijs-Leijonmalm
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Extrachromosomal circular elements targeted by CRISPR-Cas in Dehalococcoides mccartyi are linked to mobilization of reductive dehalogenase genes
- Olivia Molenda
- , Shuiquan Tang
- & Elizabeth A. Edwards
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Article
| Open AccessIntegrative analysis of fitness and metabolic effects of plasmids in Pseudomonas aeruginosa PAO1
- Alvaro San Millan
- , Macarena Toll-Riera
- & R. Craig MacLean
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Article
| Open AccessOpposing effects of final population density and stress on Escherichia coli mutation rate
- Rok Krašovec
- , Huw Richards
- & Christopher G. Knight
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Article
| Open AccessAncestral gene acquisition as the key to virulence potential in environmental Vibrio populations
- Maxime Bruto
- , Yannick Labreuche
- & Frédérique Le Roux
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Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size
- Emily C. Hoedt
- , Donovan H. Parks
- & Mark Morrison
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The anchoring effect—long-term dormancy and genetic population structure
- Lisa Sundqvist
- , Anna Godhe
- & Josefin Sefbom
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Article |
Acquisition of MACPF domain-encoding genes is the main contributor to LPS glycan diversity in gut Bacteroides species
- Valentina Laclare McEneany
- , Michael J. Coyne
- & Laurie E. Comstock
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Article
| Open AccessGenetic correlation network prediction of forest soil microbial functional organization
- Bin Ma
- , Kankan Zhao
- & Jianming Xu
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Article
| Open AccessEndosymbiont genomes yield clues of tubeworm success
- Yuanning Li
- , Mark R. Liles
- & Kenneth M. Halanych
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Convergent evolution of unusual complex I homologs with increased proton pumping capacity: energetic and ecological implications
- Grayson L. Chadwick
- , James Hemp
- & Victoria J. Orphan
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Article
| Open AccessGenetic variability and ontogeny predict microbiome structure in a disease-challenged montane amphibian
- Sarah M. Griffiths
- , Xavier A. Harrison
- & Rachael E. Antwis
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Oral microbiome development during childhood: an ecological succession influenced by postnatal factors and associated with tooth decay
- Majda Dzidic
- , Maria C. Collado
- & Alex Mira
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Article
| Open AccessDissemination and persistence of extended-spectrum cephalosporin-resistance encoding IncI1-blaCTXM-1 plasmid among Escherichia coli in pigs
- Sam Abraham
- , Roy N. Kirkwood
- & Mark O’Dea
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Article
| Open AccessProteorhodopsin variability and distribution in the North Pacific Subtropical Gyre
- Daniel K. Olson
- , Susumu Yoshizawa
- & Edward F. DeLong
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Specialized plant biochemistry drives gene clustering in fungi
- Emile Gluck-Thaler
- & Jason C. Slot
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Article
| Open AccessAge-associated microbiome shows the giant panda lives on hemicelluloses, not on cellulose
- Wenping Zhang
- , Wenbin Liu
- & Zhihe Zhang
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Novel hydrogenases from deep-sea hydrothermal vent metagenomes identified by a recently developed activity-based screen
- Nicole Adam
- & Mirjam Perner
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Article
| Open AccessBenefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise
- Shengwei Hou
- , Mario López-Pérez
- & Wolfgang R. Hess
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Original Article |
Clonal expansion behind a marine diatom bloom
- Maria Valeria Ruggiero
- , Domenico D'Alelio
- & Marina Montresor
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Original Article
| Open AccessThe bacterium Wolbachia exploits host innate immunity to establish a symbiotic relationship with the dengue vector mosquito Aedes aegypti
- Xiaoling Pan
- , Andrew Pike
- & Zhiyong Xi
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Short Communication
| Open AccessRecent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum
- Jit Ern Chen
- , Guoxin Cui
- & Manuel Aranda
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Original Article
| Open AccessA population genomics approach shows widespread geographical distribution of cryptic genomic forms of the symbiotic fungus Rhizophagus irregularis
- Romain Savary
- , Frédéric G Masclaux
- & Ian R Sanders
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Original Article |
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
- Stefan M Neuenschwander
- , Rohit Ghai
- & Michaela M Salcher
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Original Article |
Tremblaya phenacola PPER: an evolutionary beta-gammaproteobacterium collage
- Rosario Gil
- , Carlos Vargas-Chavez
- & Andrés Moya
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Original Article
| Open AccessDNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies
- Ryan M Ziels
- , Diana Z Sousa
- & David A C Beck
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Original Article |
Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs
- Bram Flahou
- , Mirko Rossi
- & Freddy Haesebrouck
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Original Article
| Open AccessLarge-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome
- Francesco Beghini
- , Edoardo Pasolli
- & Nicola Segata
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Original Article |
Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria
- Julien Tremblay
- , Etienne Yergeau
- & Charles W Greer
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Perspective
| Open AccessExact sequence variants should replace operational taxonomic units in marker-gene data analysis
- Benjamin J Callahan
- , Paul J McMurdie
- & Susan P Holmes
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Original Article
| Open AccessA genomic perspective on stoichiometric regulation of soil carbon cycling
- Wyatt H Hartman
- , Rongzhong Ye
- & Susannah G Tringe
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Original Article
| Open AccessA role for the cell-wall protein silacidin in cell size of the diatom Thalassiosira pseudonana
- Amy R Kirkham
- , Patrick Richthammer
- & Thomas Mock
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Winogradsky Review |
Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations
- Richard E Lenski
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Original Article |
Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously
- Hannah K Marchant
- , Soeren Ahmerkamp
- & Marcel M M Kuypers
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Original Article
| Open AccessGenomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen
- Francisca HID Segers
- , Lucie Kešnerová
- & Philipp Engel
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Original Article |
Mixed transmission modes and dynamic genome evolution in an obligate animal–bacterial symbiosis
- Shelbi L Russell
- , Russell B Corbett-Detig
- & Colleen M Cavanaugh
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