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| Open AccessHealth monitoring in birds using bio-loggers and whole blood transcriptomics
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| Open AccessThe chemical defensome of five model teleost fish
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| Open AccessDual RNA-seq analysis of in vitro infection multiplicity and RNA depletion methods in Chlamydia-infected epithelial cells
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| Open AccessIn silico analysis suggests the RNAi-enhancing antibiotic enoxacin as a potential inhibitor of SARS-CoV-2 infection
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| Open AccessTranscriptome analysis of gravitational effects on mouse skeletal muscles under microgravity and artificial 1 g onboard environment
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| Open AccessThe microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature
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| Open AccessIntegrated transcription factor profiling with transcriptome analysis identifies L1PA2 transposons as global regulatory modulators in a breast cancer model
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| Open AccessAn order independent algorithm for inferring gene regulatory network using quantile value for conditional independence tests
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| Open AccessAn R package for generic modular response analysis and its application to estrogen and retinoic acid receptor crosstalk
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| Open AccessTriple negative aggressive phenotype controlled by miR-135b and miR-365: new theranostics candidates
- Gloria Bertoli
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| Open AccessA new bioinformatics approach identifies overexpression of GRB2 as a poor prognostic biomarker for prostate cancer
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| Open AccessIntegrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)
- Timothy I. Shaw
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| Open AccessIntegrated genomic analysis reveals regulatory pathways and dynamic landscapes of the tRNA transcriptome
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| Open AccessMeta-analysis of host transcriptional responses to SARS-CoV-2 infection reveals their manifestation in human tumors
- Fengju Chen
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| Open AccessWeighted gene co-expression network analysis identifies modules and functionally enriched pathways in the lactation process
- Mohammad Farhadian
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| Open AccessNetwork analysis of Down syndrome and SARS-CoV-2 identifies risk and protective factors for COVID-19
- Ilario De Toma
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| Open AccessDifferential expression and correlation analysis of miRNA–mRNA profiles in swine testicular cells infected with porcine epidemic diarrhea virus
- Xiaoqian Zhang
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| Open AccessA quantitative model of cellular decision making in direct neuronal reprogramming
- Adriaan Merlevede
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| Open AccessWeighted gene co-expression network analysis of the salt-responsive transcriptomes reveals novel hub genes in green halophytic microalgae Dunaliella salina
- Bahman Panahi
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| Open AccessInvestigation of MicroRNA and transcription factor mediated regulatory network for silicosis using systems biology approach
- J. K. Choudhari
- , M. K. Verma
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| Open AccessMulti-task learning for the simultaneous reconstruction of the human and mouse gene regulatory networks
- Paolo Mignone
- , Gianvito Pio
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| Open AccessDistinct regional ontogeny and activation of tumor associated macrophages in human glioblastoma
- Alexander P. Landry
- , Michael Balas
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| Open AccessEpigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
- Nathalie Acevedo
- , Rui Benfeitas
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| Open AccessAssessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae
- Pedro T. Monteiro
- , Tiago Pedreira
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| Open AccessMicroRNA dynamics during hibernation of the Australian central bearded dragon (Pogona vitticeps)
- Alexander Capraro
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| Open AccessRewiring of gene expression in circulating white blood cells is associated with pregnancy outcome in heifers (Bos taurus)
- Sarah E. Moorey
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| Open AccessA computational guided, functional validation of a novel therapeutic antibody proposes Notch signaling as a clinical relevant and druggable target in glioma
- Dayana Herrera-Rios
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| Open AccessPCOSKBR2: a database of genes, diseases, pathways, and networks associated with polycystic ovary syndrome
- Mridula Sharma
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| Open AccessPerturbation-based gene regulatory network inference to unravel oncogenic mechanisms
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| Open AccessTranscriptomic determinants of the response of ST-111 Pseudomonas aeruginosa AG1 to ciprofloxacin identified by a top-down systems biology approach
- José Arturo Molina-Mora
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| Open AccessTranscriptomic analysis delineates potential signature genes and miRNAs associated with the pathogenesis of asthma
- Prithvi Singh
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| Open AccessEnhancing the interpretability of transcription factor binding site prediction using attention mechanism
- Sungjoon Park
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| Open AccessDynamical gene regulatory networks are tuned by transcriptional autoregulation with microRNA feedback
- Thomas G. Minchington
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| Open AccessTranscriptomic analysis by RNA sequencing characterises malignant progression of canine insulinoma from normal tissue to metastatic disease
- Y. Capodanno
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| Open AccessAChR antibodies show a complex interaction with human skeletal muscle cells in a transcriptomic study
- Yu Hong
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| Open AccessULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins
- Amanda Demeter
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| Open AccessInduced pluripotent stem cells of patients with Tetralogy of Fallot reveal transcriptional alterations in cardiomyocyte differentiation
- Marcel Grunert
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| Open AccessMotifs enable communication efficiency and fault-tolerance in transcriptional networks
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| Open AccessLandscape of immune cell gene expression is unique in predominantly WHO grade 1 skull base meningiomas when compared to convexity
- Zsolt Zador
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| Open AccessMyomirDB: A unified database and server platform for muscle atrophy myomiRs, coregulatory networks and regulons
- Apoorv Gupta
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| Open AccessDichotomy between the transcriptomic landscape of naturally versus accelerated aged murine hearts
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| Open AccessBICORN: An R package for integrative inference of de novo cis-regulatory modules
- Xi Chen
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| Open AccessWhole transcriptome analysis and validation of metabolic pathways in subcutaneous adipose tissues during FGF21-induced weight loss in non-human primates
- Sara A. Murray
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| Open AccessNetwork-based metabolic characterization of renal cell carcinoma
- Nishtha Pandey
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| Open AccessWeiBI (web-based platform): Enriching integrated interaction network with increased coverage and functional proteins from genome-wide experimental OMICS data
- Aman Chandra Kaushik
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| Open AccessDifferential impact of the ERBB receptors EGFR and ERBB2 on the initiation of precursor lesions of pancreatic ductal adenocarcinoma
- Nora Meyers
- , Claude Gérard
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| Open AccessEdgetic perturbation signatures represent known and novel cancer biomarkers
- Evans Kataka
- , Jan Zaucha
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| Open AccessL-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
- Marianna Milano
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- & Pietro Hiram Guzzi
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| Open AccessA system-level mechanistic explanation for asymmetric stem cell fates: Arabidopsis thaliana root niche as a study system
- Mónica L. García-Gómez
- , Diego Ornelas-Ayala
- & Elena R. Álvarez-Buylla