Gene regulatory networks articles within Scientific Reports

Featured

• Article
  19 April 2024 | Open Access

  Robust identification of interactions between heat-stress responsive genes in the chicken brain using Bayesian networks and augmented expression data

  • E. A. Videla Rodriguez
  • , John B. O. Mitchell
  •  & V. Anne Smith

• Article
  10 April 2024 | Open Access

  Hypoxia treatment and resistance training alters microRNA profiling in rats skeletal muscle

  • Tao Mei
  • , Yang Hu
  •  & Yanchun Li

• Article
  28 March 2024 | Open Access

  Peripheral blood transcriptomic analysis identifies potential inflammation and immune signatures for central retinal artery occlusion

  • Jiaqing Feng
  • , Ying Li
  •  & Xuan Xiao

• Article
  20 March 2024 | Open Access

  Preponderance of generalized chain functions in reconstructed Boolean models of biological networks

  • Suchetana Mitra
  • , Priyotosh Sil
  •  & Areejit Samal

• Article
  19 March 2024 | Open Access

  Uncovering the molecular mechanisms of russet skin formation in Niagara grapevine (Vitis vinifera × Vitis labrusca)

  • Guilherme Francio Niederauer
  • , Geovani Luciano de Oliveira
  •  & Anete Pereira de Souza

• Article
  26 February 2024 | Open Access

  Sexual dimorphism during integrative endocrine and immune responses to ionizing radiation in mice

  • Marissa Burke
  • , Kelly Wong
  •  & Amber M. Paul

• Article
  24 January 2024 | Open Access

  Identification of shared pathogenetic mechanisms between COVID-19 and IC through bioinformatics and system biology

  • Zhenpeng Sun
  • , Li Zhang
  •  & Jiangang Gao

• Article
  04 January 2024 | Open Access

  Transcriptome analysis in a humanized mouse model of familial dysautonomia reveals tissue-specific gene expression disruption in the peripheral nervous system

  • Ricardo Harripaul
  • , Elisabetta Morini
  •  & Susan Slaugenhaupt

• Article
  02 January 2024 | Open Access

  Integrated whole transcriptome profiling revealed a convoluted circular RNA-based competing endogenous RNAs regulatory network in colorectal cancer

  • Hasan Mollanoori
  • , Yaser Ghelmani
  •  & Mohammadreza Dehghani

• Article
  20 December 2023 | Open Access

  Identification of differences in CD4⁺ T-cell gene expression between people with asthma and healthy controls

  • Mauro Tutino
  • , Jenny Hankinson
  •  & John A. Curtin

• Article
  18 November 2023 | Open Access

  Construction of an anoikis-associated lncRNA-miRNA-mRNA network reveals the prognostic role of β-elemene in non-small cell lung cancer

  • Kai Tan
  • , Changhui Zhang
  •  & Puhua Zeng

• Article
  15 November 2023 | Open Access

  Trehalose metabolism coordinates transcriptional regulatory control and metabolic requirements to trigger the onset of cassava storage root initiation

  • Nattavat Sukko
  • , Saowalak Kalapanulak
  •  & Treenut Saithong

• Article
  14 November 2023 | Open Access

  Plasticity-led evolution as an intrinsic property of developmental gene regulatory networks

  • Eden Tian Hwa Ng
  •  & Akira R. Kinjo

• Article
  08 November 2023 | Open Access

  SIGNET: transcriptome-wide causal inference for gene regulatory networks

  • Zhongli Jiang
  • , Chen Chen
  •  & Dabao Zhang

• Article
  11 October 2023 | Open Access

  Global transcriptome analysis reveals fungal disease responsive core gene regulatory landscape in tea

  • Anjan Hazra
  • , Sanatan Ghosh
  •  & Dipankar Chakraborti

• Article
  02 October 2023 | Open Access

  Transcriptomic landscape of the interaction between the entomopathogenic fungus Beauveria bassiana and its tolerant host Tribolium castaneum revealed by dual RNA-seq

  • María Constanza Mannino
  • , Belén Davyt-Colo
  •  & Nicolás Pedrini

• Article
  23 September 2023 | Open Access

  Identification of MIR600HG/hsa-miR-342-3p/ANLN network as a potential prognosis biomarker associated with lmmune infiltrates in pancreatic cancer

  • Baolin Qian
  • , Qi Liu
  •  & Yong Ma

• Article
  21 September 2023 | Open Access

  M6A regulator methylation patterns and characteristics of immunity in acute ST-segment elevation myocardial infarction

  • Jingqi Yang
  • , Qing Shangguan
  •  & Guotai Sheng

• Article
  15 September 2023 | Open Access

  A novel necroptosis related gene signature and regulatory network for overall survival prediction in lung adenocarcinoma

  • Guoyu Wang
  • , Xue Liu
  •  & Xinhua Jia

• Article
  10 August 2023 | Open Access

  Mapping robust multiscale communities in chromosome contact networks

  • Anton Holmgren
  • , Dolores Bernenko
  •  & Ludvig Lizana

• Article
  11 July 2023 | Open Access

  Systems biology approaches to identify potential targets and inhibitors of the intestinal microbiota to treat depression

  • Fei Teng
  • , Zhongwen Lu
  •  & Jin Wang

• Article
  07 June 2023 | Open Access

  Comprehensive analysis of the coding and non-coding RNA transcriptome expression profiles of hippocampus tissue in tx-J animal model of Wilson's disease

  • Dan Wang
  • , Daojun Xie
  •  & Xiaofeng Huang

• Article
  02 June 2023 | Open Access

  Integrated bioinformatics analysis for identifying key genes and pathways in female and male patients with dilated cardiomyopathy

  • Min Zhang
  • , Xinzhou Wang
  •  & Xiaoke Zheng

• Article
  18 April 2023 | Open Access

  Statistical control of structural networks with limited interventions to minimize cellular phenotypic diversity represented by point attractors

  • Jongwan Kim
  • , Corbin Hopper
  •  & Kwang-Hyun Cho

• Article
  17 April 2023 | Open Access

  Interactions between genes altered during cardiotoxicity and neurotoxicity in zebrafish revealed using induced network modules analysis

  • Manusmriti Agarwal
  • , Ankush Sharma
  •  & Anamika Bhargava

• Article
  03 April 2023 | Open Access

  Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart

  • Marius Alexandru Botos
  • , Prateek Arora
  •  & Nadia Mercader

• Article
  03 April 2023 | Open Access

  Bioinformatics and computational chemistry approaches to explore the mechanism of the anti-depressive effect of ligustilide

  • Kun Zhang
  • , Chaoguo Zhang
  •  & Mingwei Chen

• Article
  01 April 2023 | Open Access

  Molecular pathways identified from single nucleotide polymorphisms demonstrate mechanistic differences in systemic lupus erythematosus patients of Asian and European ancestry

  • Katherine A. Owen
  • , Kristy A. Bell
  •  & Peter E. Lipsky

• Article
  27 March 2023 | Open Access

  Exploiting machine learning models to identify novel Alzheimer’s disease biomarkers and potential targets

  • Hind Alamro
  • , Maha A. Thafar
  •  & Xin Gao

• Article
  23 March 2023 | Open Access

  Characterization of radiation-resistance mechanism in Spirosoma montaniterrae DY10^T in terms of transcriptional regulatory system

  • Changyun Cho
  • , Dohoon Lee
  •  & Sathiyaraj Srinivasan

• Article
  21 March 2023 | Open Access

  Network-level analysis of ageing and its relationship with diseases and tissue regeneration in the mouse liver

  • Manisri Porukala
  •  & P. K. Vinod

• Article
  09 March 2023 | Open Access

  Major cell-types in multiomic single-nucleus datasets impact statistical modeling of links between regulatory sequences and target genes

  • Francis J. A. Leblanc
  •  & Guillaume Lettre

• Article
  06 March 2023 | Open Access

  Integrated multi-omics analysis of Alzheimer’s disease shows molecular signatures associated with disease progression and potential therapeutic targets

  • Pradeep Kodam
  • , R. Sai Swaroop
  •  & Ramakrishna Vadrevu

• Article
  11 January 2023 | Open Access

  Differential gene expression in the contralateral hemisphere of the rat brain after focal ischemia

  • Ivan B. Filippenkov
  • , Julia A. Remizova
  •  & Lyudmila V. Dergunova

• Article
  05 January 2023 | Open Access

  Single-cell-led drug repurposing for Alzheimer’s disease

  • Silvia Parolo
  • , Federica Mariotti
  •  & Enrico Domenici

• Article
  28 December 2022 | Open Access

  Multi-omics network model reveals key genes associated with p-coumaric acid stress response in an industrial yeast strain

  • F. E. Ciamponi
  • , D. P. Procópio
  •  & M. M. Brandão

• Article
  19 December 2022 | Open Access

  Analysis of merged transcriptomic and genomic datasets to identify genes and pathways underlying residual feed intake in growing pigs

  • Emil Ibragimov
  • , Anni Øyan Pedersen
  •  & Peter Karlskov-Mortensen

• Article
  08 December 2022 | Open Access

  A tensor decomposition-based integrated analysis applicable to multiple gene expression profiles without sample matching

  • Y-h. Taguchi
  •  & Turki Turki

• Article
  05 December 2022 | Open Access

  Linking single nucleotide polymorphisms to signaling blueprints in abdominal aortic aneurysms

  • Chrysania Lim
  • , Muhammad Yogi Pratama
  •  & Bhama Ramkhelawon

• Article
  22 November 2022 | Open Access

  Identification of a key ceRNA network associated with ferroptosis in gastric cancer

  • Wen Jin
  • , Jianli Liu
  •  & Lan Yu

• Article
  20 November 2022 | Open Access

  Plasma metabolomics and gene regulatory networks analysis reveal the role of nonstructural SARS-CoV-2 viral proteins in metabolic dysregulation in COVID-19 patients

  • V. A. Ivanisenko
  • , E. V. Gaisler
  •  & A. G. Pokrovsky

• Article
  08 November 2022 | Open Access

  A systematic study of HIF1A cofactors in hypoxic cancer cells

  • Yuxiang Zhang
  • , Saidi Wang
  •  & Xiaoman Li

• Article
  04 November 2022 | Open Access

  Identification of transcription factors dictating blood cell development using a bidirectional transcription network-based computational framework

  • B. M. H. Heuts
  • , S. Arza-Apalategi
  •  & J. H. A. Martens

• Article
  04 November 2022 | Open Access

  Learning complex dependency structure of gene regulatory networks from high dimensional microarray data with Gaussian Bayesian networks

  • Catharina E. Graafland
  •  & José M. Gutiérrez

• Article
  25 October 2022 | Open Access

  Co-alterations of circadian clock gene transcripts in human placenta in preeclampsia

  • Guoli Zhou
  • , Emily Winn
  •  & Hanne M. Hoffmann

• Article
  14 October 2022 | Open Access

  Transcriptional signatures of wheat inflorescence development

  • Carl VanGessel
  • , James Hamilton
  •  & Stephen Pearce

• Article
  13 October 2022 | Open Access

  Integrated network-based multiple computational analyses for identification of co-expressed candidate genes associated with neurological manifestations of COVID-19

  • Suvojit Hazra
  • , Alok Ghosh Chaudhuri
  •  & Nilkanta Chakrabarti

• Article
  03 October 2022 | Open Access

  Knowledge of the perturbation design is essential for accurate gene regulatory network inference

  • Deniz Seçilmiş
  • , Thomas Hillerton
  •  & Erik L. L. Sonnhammer

• Article
  22 September 2022 | Open Access

  Analyzing integrated network of methylation and gene expression profiles in lung squamous cell carcinoma

  • Yusri Dwi Heryanto
  • , Kotoe Katayama
  •  & Seiya Imoto

• Article
  16 July 2022 | Open Access

  Single-cell transcriptome analysis of embryonic and adult endothelial cells allows to rank the hemogenic potential of post-natal endothelium

  • Artem Adamov
  • , Yasmin Natalia Serina Secanechia
  •  & Christophe Lancrin