Abstract
The T cell antigen receptor (TCR) is unique in that its affinity for ligand is unknown before encounter and can vary by orders of magnitude. How the immune system regulates individual T cells that display very different reactivity to antigen remains unclear. Here we found that activated CD4+ T cells, at the peak of clonal expansion, persistently downregulated their TCR expression in proportion to the strength of the initial antigen recognition. This programmed response increased the threshold for cytokine production and recall proliferation in a clone-specific manner and ultimately excluded clones with the highest antigen reactivity. Thus, programmed downregulation of TCR expression represents a negative feedback mechanism for constraining T cell effector function with a suitable time delay to thereby allow pathogen control while avoiding excess inflammatory damage.
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Acknowledgements
We thank M. Samstein, H. Yan and S. Reddy for technical assistance. Supported by the US National Institutes of Health (F32 grant AI074248 to A.M.G.; AI080619 to M.S.G. and E.G.P.; and P30 CA008748) and the Netherlands Organisation for Scientific Research (Veni grant 91614038 to J.W.J.v.H.).
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A.M.G., M.S.G., E.G.P. and J.W.J.v.H. designed the study; A.M.G., H.X. and J.W.J.v.H. performed experiments and analyzed data; A.M.G. generated the C7 and C24 mice and the L. monocytogenes–ESAT6 strain; I.M.L. and B.S. bred and genotyped the C7 and C24 mice and provided technical assistance; J.W.J.v.H. first identified programmed TCR downregulation; and E.G.P. and J.W.J.v.H. wrote the manuscript.
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Integrated supplementary information
Supplementary Figure 1 C24 T cells display greater upregulation of CTLA-4 expression during activation than do C7 T cells.
Flow cytometry showing CTLA-4 expression of C7 and C24 TH1 cells, during in vitro activation for 4 days. CD4 expression is shown as a control. Data are from one experiment representative of two independent experiments.
Supplementary Figure 2 Naive C24 T cells display lower expression of CD5 but greater basal phosphorylation of TCRζ than that of naive C7 T cells.
(a) Flow cytometry showing blood CD5 expression of C7 and C24 CD4+ T cells, as well as B6 CD4+ T cells. (b) Immunoblot showing basal TCRζ phosphorylation in whole-cell lysates of naive C7 and C24 T cells. Numbers below lanes indicate TCRζ pTyr142 density normalized to β-actin and presented relative to C7 T cells. Data are from one experiment representative of two independent experiments.
Supplementary Figure 3 Programmed TCR downregulation does not require TCR stimulation beyond initial T cell activation.
(a) Flow cytometry showing blood frequency of wild-type (WT) and MHC class II-deficient (MHC II−/–) mice that received 106 CD90.1+ C7 or C24 TH1 cells, which had been activated in vitro for 4 days. Blood samples were analyzed on day 7 post T cell activation. Numbers depict the percentage of gated cells. Note the clear absence of endogenous CD4+ T cells in MHC II−/– recipients. (b,c) Flow cytometry showing TCRβ expression kinetics of blood C7 and C24 TH1 cells from the recipient mice described in a. Individual flow plots are shown in b and aggregate data are shown in c. Endogenous CD4+ T cells were identified as CD90.1− CD4+ T cells in WT recipients. Data are from one experiment representative of two independent experiments (mean + s.d. of n = 3 male mice per group (c)).
Supplementary Figure 4 Surface marker and Foxp3 expression of activated C7 and C24 T cells undergoing programmed TCR downregulation.
(a) Flow cytometry showing splenocyte surface marker expression of mice that received 104 naive CD90.1+ C7 or C24 CD4+ T cells, and were infected with recombinant L. monocytogenes-ESAT6. Cells were analyzed either before TCR downregulation (day 6) or after TCR downregulation (day 9). A representative flow plot for each surface marker is shown. Endogenous CD4+ T cells were identified as CD90.1− CD4+ T cells. (b) Flow cytometry showing Foxp3 and CD25 expression of splenic C7 and C24 CD4+ T cells, as well as endogenous CD4+ T cells, obtained on day 9 from the recipient mice described in a. Numbers depict the percentage of gated cells. Data are from one experiment representative of two independent experiments.
Supplementary Figure 5 Programmed TCR downregulation of naive C7, C24 and endogenous CD4+ T cells activated by M. tuberculosis infection.
(a) Blood frequency of mice that received 104 naive CD90.1+ C7 or C24 CD4+ T cells, or did not receive any cells (no transfer), and were infected with M. tuberculosis. Endogenous activated CD4+ T cells were defined as CD44hi CD62L− CD4+ T cells in ‘no transfer’ recipients. (b,c) Flow cytometry showing TCRβ expression kinetics of blood C7 and C24 CD4+ T cells, as well as endogenous activated and naive CD4+ T cells from the recipient mice described in a. Individual flow plots are shown in b and aggregate data are shown in c. Endogenous naive CD4+ T cells were defined as CD44lo CD62L+ CD4+ T cells in ‘no transfer’ recipients. (d) Flow cytometry showing ESAT6(1–20) tetramer binding and TCRβ expression of endogenous lung CD4+ T cells, 28 days after M. tuberculosis infection. TCRβ expression of the 10% lowest and 10% highest tetramer binding cells is shown. (e) Pearson correlation of ESAT6(1–20) tetramer binding and TCRβ expression (r = 0.89; P < 0.001). Shown are the 10% lowest and 10% highest tetramer binding cells of each mouse. Data are from one experiment representative of two independent experiments (mean + s.d. of n = 4 female mice per group (a,c) or mean of n = 5 male mice per group (e)).
Supplementary Figure 6 Programmed TCR downregulation is not mediated by a transcriptional change in CD3 components or the TCRζ chain.
(a,b) Flow cytometry showing splenocyte TCRβ expression of mice that received 104 naive CD90.1+ C7 or C24 CD4+ T cells, and were infected with recombinant L. monocytogenes-ESAT6. On day 9 post infection, CD90.1+ C7 and C24 T cells were purified from spleens by magnetic separation. Individual flow plot is shown in a and aggregate data are shown in b. (c) Real-time PCR showing relative gene expression of splenic C7 and C24 T cells, obtained from the recipient mice described in a. Signals were corrected using Actb as endogenous control. Relative mRNA expression of the indicated genes was determined using the comparative CT method and normalized to the signal obtained for C7 T cells. Data are from one experiment representative of two independent experiments (mean + s.d. of n = 3 male mice per group (b,c)).
Supplementary Figure 7 Programmed TCR downregulation is a shared feature of clonally expanded CD4+ T cells and CD8+ T cells.
(a) Flow cytometry showing blood frequency of mice that were infected with recombinant L. monocytogenes-ESAT6 on day 0 and reinfected with the same bacteria on day 28. Blood samples were analyzed on day 31 post infection. Gating on CD4+ T cells revealed the presence of two subpopulations, with cells expressing either an activated (CD44hiCD62L−) or a naive (CD44loCD62L+) phenotype. Similar to CD4+ T cells, gating on CD8+ T cells revealed the presence of both activated and naive T cells, in addition to a third subpopulation that was CD44hiCD62L+, consistent with a central memory phenotype. Numbers depict the percentage of gated cells. (b) Blood frequency of endogenous activated CD4+ and CD8+ T cells from the mice described in a. (c,d) Flow cytometry showing TCRβ expression kinetics of endogenous activated CD4+ and CD8+ T cells from the mice described in a. Individual flow plots are shown in c and aggregate data are shown in d. Data are from one experiment representative of two independent experiments (mean + s.d. of n = 5 male mice per group (b,d)).
Supplementary Figure 8 Programmed TCR downregulation is relatively insensitive to the dose of activating peptide.
(a) Flow cytometry showing CFSE dilution of C7 and C24 CD4+ T cells activated with either 5,000 ng mL−1 or 50 ng mL−1 ESAT6(1–20) peptide for 3 days. (b) Blood frequency of mice that received 106 CD90.1+ C24 TH1 cells, which had been activated in vitro with either 5,000 ng mL−1 or 50 ng mL−1 ESAT6(1–20) peptide for 3 days. (c,d) Flow cytometry showing TCRβ expression kinetics of blood C24 TH1 cells from the recipient mice described in b. Individual flow plots are shown in c and aggregate data are shown in d. Endogenous CD4+ T cells were identified as CD90.1− CD4+ T cells. Data are from one experiment representative of two independent experiments (mean + s.d. of n = 5 female mice per group (b,d)).
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Supplementary Table 1
Table showing validation of antibodies used in the study (XLS 27 kb)
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Gallegos, A., Xiong, H., Leiner, I. et al. Control of T cell antigen reactivity via programmed TCR downregulation. Nat Immunol 17, 379–386 (2016). https://doi.org/10.1038/ni.3386
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DOI: https://doi.org/10.1038/ni.3386
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