Abstract
Combined small-cell lung carcinoma (cSCLC) is composed of small-cell lung carcinoma (SCLC) admixed with non-small-cell lung carcinoma (NSCLC). Evaluating the molecular differences between SCLC and NSCLC could lead to a better understanding of the pathogenesis of such neoplasms. Therefore, in this study, we investigated the correlation between histone acetylation and Notch1 expression in lung carcinoma. Using chromatin immunoprecipitation (ChIP) assay, we measured the level of acetylated histone H3 around the promoter region of Notch1 in SCLC and NSCLC cells. We then treated SCLC cells with trichostatin A (TSA) and characterized the level of histone H3 acetylation at Notch1. In addition, TSA-treated cells were injected into immune-compromised mice, for analysis of the ex vivo tumor xenograft phenotype. The level of acetylated histone H3 surrounding the Notch1 promoter was lower in lung cancer cells not expressing Notch1. Tumors originated from TSA-treated SCLC cells occasionally formed an epithelial-like glandular arrangement of cells; with Notch1 expression and decreased expression of neuroendocrine (NE) markers. Histone deacetylation around the promoter region of Notch1 inhibits Notch1 protein expression in SCLC and the restoration of Notch1 expression in SCLC leads to the concurrent appearance of epithelial-like areas within the SCLC, which could provide a possible mechanism for histogenesis of cSCLC.
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Main
Combined small-cell lung carcinoma (cSCLC) is defined by the World Health Organization (WHO) as small-cell carcinoma (SCLC) combined with any of the non-small-cell lung carcinoma (NSCLC) types including adenocarcinoma (ADC), squamous cell carcinoma (SCC), and large-cell carcinoma (LCC).1 SCLC (including the cSCLC variant) comprises 15–20% of all lung cancers, with cSCLC accounting for 4–6%, with a high incidence of mortality.2 Combined tumors in any organ raise biologic questions about its origin, pathogenesis, and treatment. In addition, cSCLC is considered as a type of SCLC, possibly due to the neuroendocrine (NE) differentiation of both tumor components,3 yet the difference in their morphology needs further clarification. Due to the lack of cSCLC cell lines, studying such a unique type of lung carcinoma in vitro requires comparison of cellular models of both SCLC and NSCLC, to mimic the clinical scenario.
One of the most significant molecular differences between SCLC and NSCLC is the activation of Notch1 signaling in the latter.4, 5, 6 Notch1 has different roles in SCLC and NSCLC, as we previously showed,6, 7 and its induction induced ‘epithelial-like’ features in SCLC tissue sections.6 The exact mechanism of Notch1 silencing in SCLC remains unclear, although 25% of SCLC cases have mutations in Notch-related genes.8 Moreover, histone acetylation has been reported to affect the development and progression of lung carcinoma in both SCLC and NSCLC.9, 10, 11, 12 In addition, restoration of Notch1 protein expression in SCLC cells, after treatment with a histone deacetylase inhibitor (HDACi),13, 14, 15 suggests that histone deacetylation is responsible for epigenetic inactivation of Notch1 in SCLC. As HDACi treatment induces global DNA histone acetylation,16 comparison of the level of histone acetylation at the promoter region of Notch1 in Notch1-expressing and non-Notch1-expressing cells is necessary to confirm the role of histone acetylation in Notch1 expression. In the present study, we examined the expression of Notch1 in SCLC and NSCLC cell lines and tissue sections, as well as in surgically resected cSCLC tissue sections. In addition, to clarify the contribution of histone deacetylation to the silencing of Notch1 in SCLC, we examined the level of acetylated histone H3 surrounding the promoter region of Notch1 in SCLC compared to that of NSCLC cell lines, by quantitative analysis using a chromatin immunoprecipitation (ChIP) assay. Moreover, we used an HDACi; trichostatin A (TSA), to treat SCLC cells, and then examined the level of acetylated histone H3 at the promoter region of Notch1, to clarify whether or not HDACi specifically induces acetylation at the Notch1 promoter region. In addition, we xenotransplanted TSA-treated SCLC cells into immune-compromised mice, and examined the change in the morphology of tumor cells after restoration of Notch1 expression. Moreover, we examined the effect of TSA treatment on some of SCLC biological properties including cell adhesion, epithelial mesenchymal transition, and cell proliferation. Our findings reveal the role of epigenetic modulation of Notch1 expression in SCLC and NSCLC, which may lead to a better understanding of the origin of cSCLC, and thus, therapeutic targeting for such lung neoplasms.
Materials and methods
Cell Lines
The following human lung cancer cell lines were purchased from the American Type Cell Collection (Manassas, VA): H69, H69AR, H889, and HI668 (SCLC), H358 and H1975 (adenocarcinoma; ADC), and H226 and H2170 (squamous cell carcinoma; SCC). H15 SCC and SBC-3 SCLC cell lines were a generous gift from Dr Makato Suzuki (Department of Respiratory Surgery, Graduate School of Medical Sciences, Kumamoto University). The A549 ADC cell line was provided by RIKEN Bio Resource Center (Tsukuba, Japan). All growth media were purchased from Wako Pure Chemical Industries (Osaka, Japan) and supplemented with 1% penicillin/streptomycin (Sigma Aldrich, Ontario, Canada). A549 cells were grown in DMEM supplemented with 10% FBS (Hyclone, Logan, UT). SBC-3 cells were grown in EMEM with 10% FBS. H69AR cells were grown in RPMI 1640 medium supplemented with 2 mM l-glutamine, 10 nM HEPES, 1 mM sodium pyruvate, 4.5 g/l glucose, 1.5 g/l sodium bicarbonate, and 20% FBS. The rest of the cells were grown in similar RPIMI 1640 medium, but were supplemented with 10% FBS. All cells were incubated at 37 °C in 5% CO2 and saturated humidity. Supplementary Table S1 summarizes the type of cells used.
Western Blotting Analysis
Cells were prepared for western blot (WB) as previously described.17 A list of primary antibodies used is listed in Supplementary Table S2. The membrane was then washed and incubated with the respective secondary antibodies conjugated with peroxidase (Amersham Pharmacia Biotech, Buckinghamshire, UK) for 1 h, and the immune complex was visualized with an ECL system (Santa Cruz Biotechnology, Santa Cruz, CA).
ChIP Assay
The promoter region of the Notch1 gene was determined from the location of the transcriptional start site and the genomic structure surrounding this site.18 In brief, two sets of PCR primers were designed to cover the promoter region. In addition, a PCR primer for another non-promoter region on the Notch1 gene was designed and served as a negative control. A list of primers used is listed in Supplementary Table S3. ChIP assays were performed using anti–acetylated histone H3 (Millipore, Darmstadt, Germany) and normal rabbit IgG (sc2027, Santa Cruz Biotechnology), as previously described.19 Two million cells were harvested, fixed in 1% formaldehyde, and sonicated to produce chromatin fragments 300 to 500 bp in length. The precipitated DNAs were extracted by phenol-chloroform, and then purified. Quantitative PCR (qPCR) reactions included the following: 5 μl of ChIP product, 10 μl of 2X SYBR green PCR master mix (Applied Biosystem, Carlsbad, CA, USA, 4309155), and 25 nM of each primer. The concentration of the ChIP samples was calculated as a percent of the input DNA isolated from immunoprecipitated chromatin, and whole cell extracts (input) were used as templates for PCR. Then, the fold enrichment of each sample was calculated as the difference between each sample and the negative control sample. In cells treated with TSA, levels of relative expression>2.0 were considered to be a significant increase in Notch1 expression from TSA treatment, as previously described.20 Individual assays were repeated three times to confirm the reproducibility of the experiment.
HDACi Treatment
For cell proliferation and in vitro enzyme inhibition studies, a 2 mM solution of Trichostatin A (TSA) (Sigma Aldrich) in DMSO was prepared and stored at −20 °C until use. Cells were grown to 50% confluency and then treated with TSA with various concentrations (100, 300, and 1000 nM) for 24 h. Another set of cells was treated with DMSO as a vehicle control. The proper concentration of TSA was adjusted so that cell growth was inhibited to 30% confluency.21, 22
Immunofluorescence Microscopy
Cells were plated in 24-well plates and treated as previously described.17 A list of primary antibodies used is listed in Supplementary Table S2. Cells were incubated with the appropriate secondary antibodies (Alexa Flour, Molecular Probes, Eugene, OR) and examined using a fluorescent microscope (Olympus, Tokyo, Japan).
Reverse Transcription-PCR
Total RNA was isolated from cells using Trizol reagent (Invitrogen, Carlsbad, CA), in accordance to the manufacturer’s instructions, and then processed as previously described.6, 16 A list of primers used and conditions of RT-PCR is listed in Supplementary Table S4. Amplified DNA fragments were separated on a 1.5% agarose gel and identified after ethidium bromide staining.
Tumor Xenograft Growth In vivo and Histopathological Evaluation
Rag2(−/−):Jak3(−/−) mice at 5 to 6 weeks of age, were used for all studies involving animals. All animal work was done according to Institutional Animal Care and Use Committee guidelines. The viability of H1688 cells was determined by trypan blue, and only cell populations with 90% or greater viability were used for this investigation. Two groups of mice were injected subcutaneously in the back; one group was injected with a 2 × 106 TSA-treated cell population, and the other group was injected with an equal number of a DMSO-treated cell population, for a period of 28 days. Individual tumors were split for fixation in 4% paraformaldehyde and then used for histology and immunostaining. Representative data were obtained from six mice per experimental group.
In addition, tissue samples of lung ADC (n=10), SCC (n=5), SCLC (n=10), and cSCLC (n=7) were obtained from anonymous cases of lung cancer patients, who were surgically treated at Kumamoto University and Minami Kyushu National Hospitals, following the guidelines of the Ethics Committee of Kumamoto University (approval number 342). All samples were fixed with 10% formalin and embedded in paraffin. Tissue sets were stained with hematoxylin and eosin (H&E), Alcian blue, and immunohistochemical (IHC) staining, as previously described.6 A list of primary antibodies used is listed in Supplementary Table S2. Appropriate positive control and negative control tissue slides were subsequently performed. All histopathological and IHC stained slides were reviewed by the researcher and another independent pathologist in a blinded fashion. The immunoreaction for Notch1 was assessed in cell membranes and/or cytoplasm, while that for NE markers (synaptophysin (SYP), chromogranin A (CGA), and neuron-specific enolase (NSE)) was evaluated in cell cytoplasm. A modified semi-quantitative method was used to assess the staining intensity, as previously described.3
Statistical Analysis
The results were expressed as the means±the standard error of triplicate determinations. The differences in the mean values between the groups were analyzed by two-tailed statistical analysis using Student’s t-tests. P-values less than 0.05 were considered to be statistically significant. Statistical analysis was performed using the JMP9 software program (SAS Institute, Cary, NC, USA).
Results
Expression of Notch1 in Lung Cancer
Notch1 and its activated intracellular domain (NICD) were often detected by WB analysis of NSCLC cells. In contrast, all SCLC cells, except H69AR and SBC-3, lacked Notch1 expression (Figure 1a). To confirm our in vitro findings, IHC staining of human lung carcinoma tissue was performed. SCLC cells showed negative Notch1 expression (n=10/10), while NSCLC cells showed positive Notch1 expression; with strong staining in the membranes of ADC cells (n=10/10), and weak staining in the cytosol of SCC cells (n=9/9) (Figure 1b and Table 1). Moreover, NICD showed similar IHC expression patterns (Supplementary Figure 1A). Regarding cSCLC, four cases were found to be SCLC with ADC, and three cases were found to be SCLC with SCC. The expression patterns of Notch1 in cSCLC cases was different in either component of cSCLC, and similar to that of pure SCLC and NSCLC cases, with expression of Notch1 negative in the SCLC component; while strongly positive in the ADC component and weakly positive in the SCC component (Figure 1c and Table 1).
Expression of Acetylated Histone H3 and the Level of its Expression Around the Notch1 Promoter in SCLC and NSCLC Cells
We detected the level of expression of acetylated histone H3 in lung cancer cells by WB. There was a significant difference in the expression of acetylated histone H3 between SCLC and NSCLC cells, with the greatest expression detected in the former. In addition, within SCLC cells, we observed lower expression of acetylated histone H3 in SBC-3 cells (Notch1 protein-expressing cells) compared to other non-Notch1 protein-expressing cells (H69, H889, and H1688), which may signify a relationship between histone acetylation and the expression of Notch1 in SCLC cells (Figure 2a). Next, using ChIP assay, the level of acetylation of histone H3 surrounding the promoter region of Notch1 was examined in three groups of lung cancer cells: SCLC with no Notch1 expression; H69 and H1688, SCLC with Notch1 expression; H69AR and SBC-3, and NSCLC; A549 (ADC) and H2170 (SCC). We found that the expression of acetylated histone H3 was reduced in H69 and H1688 cells, increased by about 3-fold in H69AR and SBC-3 cells, increased by about 20-fold in A549 cells, and increased by 10-fold in H2170 cells (Table 2 and Figure 2b). These observations indicate that histone H3 acetylation is associated with Notch1 protein expression in lung cancer cell lines.
TSA Effect on Notch1 Expression
To further clarify the role of histone acetylation in controlling Notch1 expression in SCLC cells, we treated H69 and H1688 cells with TSA concentrations of 300 nM and 1000 nM, respectively, for 24 h, which resulted in a 30–50% inhibition of cell growth in vitro. The expression of acetylated histones H3 and H4 detected by WB and immunofluorescence (IF) confirmed the successful histone acetylation. We found increased expression of Notch1 by WB, IF, and RT-PCR in treated cells (Figure 3a).
Acetylation Level of Histone H3 Around the Notch1 Promoter in TSA-Treated Cells
After confirming the ability of TSA to induce Notch1 protein expression in SCLC, we tested whether such effect is caused by TSA direct acetylation of the promoter region of Notch1. We compared the level of histone H3 acetylation at the Notch1 promoter in untreated SCLC cells and in cells treated with TSA, by ChIP assay using antibodies against acetylated histone H3. In H1688 cells with induction of Notch1 expression by TSA treatment, the level of histone H3 acetylation at the Notch1 promoter was increased (>2.0, underlined in Table 3 and Supplementary Table S5). In contrast, H69 cells with Notch1 induction after TSA treatment did not show a significant change in H3 acetylation at the Notch1 promoter. These observations indicate that TSA treatment may lead to an increase in the level of H3 acetylation at the promoter region of Notch1, leading to Notch1 protein expression.
Morphology of Tumors Arising From Xenotransplantation of H1688 Cells Treated with TSA
We examined whether Notch1 induction in SCLC after TSA treatment changes the morphology of tumor cells, leading to the development of an NSCLC component within the tumor. We have previously shown that induction of Notch1 by plasmid transfection in SCLC cells induced an ‘epithelial-like’ cell arrangement.6 After confirming sustained expression of Notch1 in H1688 cells treated with TSA for 28 days by WB analysis (data not shown), we xenotransplanted a 2 × 106 TSA-treated cell population into immunocompromised mice, as described in the materials and methods, and examined the tumor morphology after 28 days. The subcutaneous tumors, originating from TSA-treated cells, showed multiple foci of glandular arrangement of cells, and Alcian blue staining at their luminal surfaces (Figure 3b). In addition, TSA-treated cells showed positive Notch1 staining (Figure 3c) and decreased expression of NE markers SYP (Figure 3c), NSE, and CGA. These findings indicate the possible acquirement of epithelial-like features, in cells that regained Notch1 expression after TSA treatment.
Effect of TSA Treatment on SCLC Biological Properties
Treatment of SCLC cell with TSA resulted in an increased expression of E cadherin (E cad), and a decreased expression of epithelial mesenchymal transition markers slug and Vimentin (Vim), as shown by WB analysis and IF (Supplementary Figure 1B). In addition, in TSA-treated H69 cells, the expression of snail was decreased. Moreover, cells treated with TSA showed decreased expression of phosphorylated histone H3 (p-H3), a cell proliferation marker, and increased expression of cleaved caspase 3 (CCsp3), a cell apoptotic marker.
Discussion
Lung cancer is the most frequent and one of the deadliest cancer types, with >1.1 million deaths annually worldwide.1 Among its various types, SCLC accounts for ~15% of cases, and regardless of its stage, the current prognosis for patients with SCLC is unsatisfactory, despite improvements in diagnosis and therapy.23 The new 2015 WHO classification of lung tumors1 listed cSCLC as a variant of SCLC, consisting predominantly of SCLC with some areas of NSCLC. The presence of NSCLC components is usually seen in up to 30% of SCLC case autopsies, whereas SCLC components are seen in approximately 14% of NSCLC tumors with EGFR mutations.24 In addition, cSCLC occurs after treatment of ‘pure’ SCLC with chemotherapy and/or radiation.25 The present study represents a trial to better understand the mechanisms by which both SCLC and NSCLC components could evolve in the same tumor.
Due to the lack of cSCLC cell lines, we evaluated cellular models of SCLC and NSCLC (Supplementary Table S4), as well as tissue sections from cSCLC cases. Besides the morphological, genetic, and biological discrepancies between SCLC and NSCLC, we were interested in the difference between their expression of Notch1,4, 5, 6, 26 as Notch signaling is one of the main regulator systems for SCLC carcinogenesis and differentiation,8 and whether an epigenetic effect, especially histone acetylation, could influence Notch1 expression in lung carcinoma cells, based on the observation that treating SCLC cells with HDACi results in restoration of Notch1 expression.13, 14, 15 Moreover, we investigated whether SCLC cells that regained Notch1 expression show features of NSCLC, as we previously showed that xenotransplanted SCLC cells transfected with Notch1 NICD plasmid showed glandular-like cell arrangement, with decreased NE markers and positive Alcian blue staining.6
Among the cells used, H69 is a drug-sensitive SCLC cell line, which when treated with increasing concentrations of doxorubicin, the surviving cells, named H69AR, develop a multidrug-resistant phenotype.27 We have previously shown that H69AR cells weakly express neuroendocrine markers, and strongly express MRP1, E cadherin, and BCL-2 proteins, compared to H69 cells, which could play a role in the multidrug resistance of H69AR cells.6, 7 The nature of development of such drug resistance is multifactorial, involving gene mutations and epigenetic alterations, resulting in DNA methylation and altered miRNA.28 Elevated levels of histone acetylation in the MRP1 promoter in SCLC drug-resistant cells has previously been described.29 In addition, overexpression of miR-134, miR-379, and miR-495 in H69AR cells lead to re-sensitization of cells to cisplatin, etoposide, and doxorubicin.30
Our results showed that the two components of cSCLC are different from each other, but similar to their respective “pure” counterparts, and that Notch1 is only expressed in the NSCLC component. To clarify the importance of histone acetylation in Notch1 silencing in SCLC, we evaluated the expression of acetylated histone H3 in lung cancer cells. By WB analysis, there was significant difference between both SCLC and NSCLC cells. Using ChIP assay, we further measured the level of acetylated histone H3 around the promoter region of the Notch1 gene in lung cancer cells, and were able to identify high levels of acetylation in cells expressing the Notch1 protein in both SCLC and NSCLC cell lines. This is the first report that confirmed the role of histone acetylation in Notch1 expression in lung cancer cells.
In addition, to confirm this finding, we measured the level of acetylated histone H3 around the Notch1 promoter in two SCLC cells treated with the HDACi, TSA. One of the treated SCLC cells (H1688) showed a significant increase in the level of acetylated histone H3 at the Notch1 promoter after TSA treatment, possibly due to the high dose of TSA used for treatment, indicating that an increased acetylated histone H3 level at the Notch1 promoter, alongside other possible mechanisms,13, 14 could be attributed to the activation of Notch1 signaling in SCLC after HDACi treatment.
Such differences in Notch1/acetylated histone H3 expression could possibly signify that epigenetic modifications can occur in a ‘pure’ lung carcinoma cell type (whether SCLC or NSCLC), leading to the concomitant appearance of other components within the same tumor. Our findings were in accordance with previous studies3, 26 that reported similarities between the two components of cSCLC, indicating a monoclonal origin of the two components that underwent divergent differentiation. In these reports, the authors investigated cases of combined small-cell/large-cell neuroendocrine carcinomas, and compared their genetic alterations to their respective pure forms.3 There were similar frequencies of allelic imbalance in each component of combined neoplasms vs their respective pure forms,3 and in addition the two components showed a higher degree of genetic concordance.3, 31
In addition, we aimed to examine the morphology of TSA-treated SCLC cells, and whether the morphology of cells changes after the enrichment of acetylated histones and Notch1 restoration, leading to the concurrent appearance of the NSCLC component. Xenotransplanted H1688 cells treated with TSA retained their cytoplasmic Notch1 expression and showed multiple foci of glandular cell arrangement, with positive Alcian blue staining and reduced staining for neuroendocrine markers. These findings were similar to our previous observations regarding subcutaneous tumors arising from H1688 cells transfected with the Notch1 NICD plasmid.6 These observations indicate the appearance of “epithelial-like cell features” in SCLC after the increase in the histone acetylation level of cells that underwent HDACi treatment, despite no significant changes in cellular morphology being observed. This indicates the important role of epigenetic modification, especially histone acetylation, in the histogenesis of cSCLC. In accordance with this, Meder et al. (2015)32 postulated that cSCLC could have an NSCLC-dependent secondary tumor origin through inactivating Notch mutations and bi-allelic loss of TP53 and RB1. Moreover, increased ASCL1 expression in NSCLC lead to the concomitant appearance of a SCLC component.33 Whether cSCLC arises from SCLC that acquires Notch expression, or from NSCLC that loses Notch expression, is a subject for further investigation. In addition, we showed that TSA treatment of SCLC cells resulted in increased cell adhesion, decreased expression of epithelial mesenchymal transition markers, decreased cell proliferation, and activated cell apoptosis. These effects may be related to TSA induction of Notch1 expression, as we previously showed,6, 7 even in H1688 cells, in which Notch1 plasmid transfection could not affect cell adhesion or epithelial mesenchymal transition markers,7 which signifies the potency of TSA treatment on SCLC.
Summary and conclusion
Although cSCLC represents a less common variant of SCLC, its high mortality rate and failure of modality treatment necessitates a better understanding of the origin of these tumors. The present study attempted to reveal a possible role for histone acetylation in the origin of cSCLC. We have shown a significant correlation between the level of acetylation of histone H3 surrounding the promoter region of Notch1, and its expression in human lung cancer cell lines. The results indicated that histone deacetylation plays an important role in Notch1 silencing in SCLC, and that restoration of Notch1 expression in SCLC cells could lead to the concurrent appearance of epithelial-like areas within the SCLC. These findings may indicate that the two components of cSCLC have a common cell origin, and that several epigenetic mechanisms, especially histone acetylation, could occur in one of these components and lead to the appearance of the others. However, further studies aimed at examining other possible epigenetic mechanisms are necessary to uncover the pathogenesis of cSCLC.
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Acknowledgements
We thank Mrs Motoko Kagayama and Mrs Takako Maeda for their skillful technical assistance. This study was partially supported by a Grant-in-Aid for Scientific Research (C; No.25460439) from the Ministry of Education, Culture, Sports, Science, and Technology of Japan.
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The authors investigated the role of histone acetylation in the development of combined small cell lung carcinoma (cSCLC). They show that histone deacetylation leads to Notch1 silencing in cSCLC and that restoration of Notch1 expression can cause the concurrent appearance of some epithelial-like areas, thus providing a possible mechanism for histogenesis of cSCLC.
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Hassan, W., Takebayashi, Si., Abdalla, M. et al. Correlation between histone acetylation and expression of Notch1 in human lung carcinoma and its possible role in combined small-cell lung carcinoma. Lab Invest 97, 913–921 (2017). https://doi.org/10.1038/labinvest.2017.36
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DOI: https://doi.org/10.1038/labinvest.2017.36
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