Featured
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Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia
- Dimitry Y. Sorokin
- , Tamara V. Tikhonova
- & Sebastian Lücker
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Article
| Open AccessTaurine as a key intermediate for host-symbiont interaction in the tropical sponge Ianthella basta
- Florian U. Moeller
- , Craig W. Herbold
- & Michael Wagner
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Article
| Open AccessUnexpected complexity of the ammonia monooxygenase in archaea
- Logan H. Hodgskiss
- , Michael Melcher
- & Christa Schleper
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Article
| Open AccessMarine bacteroidetes use a conserved enzymatic cascade to digest diatom β-mannan
- Irena Beidler
- , Craig S. Robb
- & Jan-Hendrik Hehemann
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Article
| Open AccessCoral holobiont cues prime Endozoicomonas for a symbiotic lifestyle
- Claudia Pogoreutz
- , Clinton A. Oakley
- & Christian R. Voolstra
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Article
| Open AccessMeta-omics-aided isolation of an elusive anaerobic arsenic-methylating soil bacterium
- Karen Viacava
- , Jiangtao Qiao
- & Rizlan Bernier-Latmani
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Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria
- Nicolas Gallois
- , Béatrice Alpha-Bazin
- & Virginie Chapon
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Article
| Open AccessProteomic traits vary across taxa in a coastal Antarctic phytoplankton bloom
- J. Scott P. McCain
- , Andrew E. Allen
- & Erin M. Bertrand
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A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium
- Martin Pabst
- , Denis S. Grouzdev
- & Michele Laureni
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Article
| Open AccessMethanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds
- Julia M. Kurth
- , Masaru K. Nobu
- & Cornelia U. Welte
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Article
| Open AccessChanging expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom
- T. Ben Francis
- , Daniel Bartosik
- & Dörte Becher
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Article
| Open AccessNiche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation
- Ian D. E. A. Lidbury
- , Chiara Borsetto
- & David J. Scanlan
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Brief Communication
| Open AccessComparative proteomics of related symbiotic mussel species reveals high variability of host–symbiont interactions
- Ruby Ponnudurai
- , Stefan E. Heiden
- & Stephanie Markert
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Article
| Open AccessGenomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts
- Yi Yang
- , Jin Sun
- & Pei-Yuan Qian
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Article
| Open AccessMetaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes
- Molly P. Mikan
- , H. Rodger Harvey
- & Brook L. Nunn
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| Open AccessIn marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
- Karen Krüger
- , Meghan Chafee
- & Hanno Teeling
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Proteomics quantifies protein expression changes in a model cnidarian colonised by a thermally tolerant but suboptimal symbiont
- Ashley E. Sproles
- , Clinton A. Oakley
- & Simon K. Davy
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Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities
- Alberto Scoma
- , Robert Heyer
- & Nico Boon
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Article
| Open AccessAntiepileptic drug carbamazepine promotes horizontal transfer of plasmid-borne multi-antibiotic resistance genes within and across bacterial genera
- Yue Wang
- , Ji Lu
- & Jianhua Guo
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A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds
- Tobias Koch
- & Christiane Dahl
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Multiple mechanisms drive phage infection efficiency in nearly identical hosts
- Cristina Howard-Varona
- , Katherine R. Hargreaves
- & Matthew B. Sullivan
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Commentary
| Open AccessCritical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns
- Emma Timmins-Schiffman
- , Damon H May
- & Brook L Nunn
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Original Article |
An unusual strategy for the anoxic biodegradation of phthalate
- Christa Ebenau-Jehle
- , Mario Mergelsberg
- & Matthias Boll
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Original Article |
Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics
- Freya Mosbæk
- , Henrik Kjeldal
- & Jeppe L Nielsen
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Original Article
| Open AccessDiversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines
- David Kamanda Ngugi
- , Jochen Blom
- & Ulrich Stingl
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Original Article |
The effect of microbial colonization on the host proteome varies by gastrointestinal location
- Joshua S Lichtman
- , Emily Alsentzer
- & Joshua E Elias
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Original Article
| Open AccessCyanobacterial reuse of extracellular organic carbon in microbial mats
- Rhona K Stuart
- , Xavier Mayali
- & Michael P Thelen
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Original Article |
Effects of low temperature on tropical and temperate isolates of marine Synechococcus
- Deepa Varkey
- , Sophie Mazard
- & Ian T Paulsen
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Mini Review |
Monitoring host responses to the gut microbiota
- Joshua S Lichtman
- , Justin L Sonnenburg
- & Joshua E Elias
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Original Article |
Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence
- Hisaya Kojima
- , Yoshitoshi Ogura
- & Manabu Fukui
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Original Article |
Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics
- Martin Grube
- , Tomislav Cernava
- & Gabriele Berg
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Short Communication
| Open AccessExploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics
- Ashley S Johnson-Rollings
- , Helena Wright
- & Elizabeth M H Wellington
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Original Article |
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
- Kelly C Wrighton
- , Cindy J Castelle
- & Jillian F Banfield
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Original Article
| Open AccessFunctional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803
- Antje Kabisch
- , Andreas Otto
- & Thomas Schweder
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Original Article |
Metaproteomic analysis of a winter to spring succession in coastal northwest Atlantic Ocean microbial plankton
- Anna A Georges
- , Heba El-Swais
- & David A Walsh
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Original Article
| Open AccessIntegrated transcriptomic and proteomic analysis of the global response of Wolbachia to doxycycline-induced stress
- Alistair C Darby
- , A Christina Gill
- & Benjamin L Makepeace
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Original Article |
Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity
- Fan Lü
- , Ariane Bize
- & Théodore Bouchez
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Original Article
| Open AccessLight-stimulated growth of proteorhodopsin-bearing sea-ice psychrophile Psychroflexus torquis is salinity dependent
- Shi Feng
- , Shane M Powell
- & John P Bowman
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Original Article |
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
- Kim M Handley
- , Nathan C VerBerkmoes
- & Jillian F Banfield
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Original Article
| Open AccessThe chemical interactome space between the human host and the genetically defined gut metabotypes
- Ulrik Plesner Jacobsen
- , Henrik Bjørn Nielsen
- & Gianni Panagiotou
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Original Article
| Open AccessMetaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation
- María-Eugenia Guazzaroni
- , Florian-Alexander Herbst
- & Manuel Ferrer
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Original Article |
Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium
- Martin Taubert
- , Carsten Vogt
- & Jana Seifert
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Original Article |
A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters
- Timothy J Williams
- , Emilie Long
- & Ricardo Cavicchioli
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Original Article
| Open AccessWho is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions
- Thomas Schneider
- , Katharina M Keiblinger
- & Kathrin Riedel
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Original Article |
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
- Frank O Aylward
- , Kristin E Burnum
- & Cameron R Currie
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Original Article |
Metaproteogenomic analysis of a community of sponge symbionts
- Michael Liu
- , Lu Fan
- & Torsten Thomas
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Original Article |
In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis
- David Halter
- , Florence Goulhen-Chollet
- & Philippe N Bertin
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Original Article |
Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire
- Eidy de O Santos
- , Nelson Alves Jr
- & Fabiano L Thompson
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Original Article |
Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions
- Christopher P Belnap
- , Chongle Pan
- & Jillian F Banfield