Featured
-
-
Article |
A photoconvertible fluorescent reporter to track chaperone-mediated autophagy
Soluble cytosolic proteins can be degraded in lysosomes by chaperone-mediated autophagy, however, the current method to measure this process requires isolation of lysosomes. Now, a fluorescent reporter is described that can measure this type of autophagy in intact cells.
- Hiroshi Koga
- , Marta Martinez-Vicente
- & Ana Maria Cuervo
-
Article |
A synthetic icosahedral DNA-based host–cargo complex for functional in vivo imaging
Encapsulating molecules within supramolecular frameworks for potential biological application is challenging. Bhatiaet al. incorporate a fluorescent polymer within an icosahedral DNA nanocapsule, and show that it can be used to target specific cells in vivoand map pH spatially and temporally.
- Dhiraj Bhatia
- , Sunaina Surana
- & Yamuna Krishnan
-
Article |
The neural circuits and sensory channels mediating harsh touch sensation in Caenorhabditis elegans
The mechanisms by which animals distinguish between harsh and gentle touch are unclear. UsingCaenorhabditis elegansas a model system, the authors identify neural circuits and touch-sensitive ion channels that are required for harsh touch sensation.
- Wei Li
- , Lijun Kang
- & X.Z. Shawn Xu
-
Article
| Open AccessPredicting sites of ADAR editing in double-stranded RNA
ADAR enzymes edit double-stranded RNA, converting adenosines to inosines, and are essential for neuronal function. Eggingtonet al. quantify edit sites in RNA using a Sanger sequencing protocol and use the resulting data to develop algorithms to predict RNA edit sites.
- Julie M. Eggington
- , Tom Greene
- & Brenda L. Bass
-
Article
| Open AccessLarge-scale single-chirality separation of single-wall carbon nanotubes by simple gel chromatography
Large-scale separation of single-wall carbon nanotubes into populations of single chirality is a significant challenge in the practical application of nanotubes. Now, using multicolumn gel chromatography, the large-scale separation of 13 different carbon nanotube species is achieved.
- Huaping Liu
- , Daisuke Nishide
- & Hiromichi Kataura
-
Article |
Subcellular in vivo time-lapse imaging and optical manipulation of Caenorhabditis elegans in standard multiwell plates
The nematodeCaenorhabditis elegans is a widely used model organism for visualizing development, ageing and other phenomena, but high-throughput imaging requires immobilization of the animal. Rohde and Yanik report a rapid immobilization and imaging method for the high-throughput screening of C. elegans.
- Christopher B. Rohde
- & Mehmet Fatih Yanik
-
Article
| Open AccessErrors in the measurement of voltage-activated ion channels in cell-attached patch-clamp recordings
Voltage-activated ion channels can be measured in neurons using the cell-attached patch-clamp technique. Williams and Wozny show that this technique is prone to errors that are caused by the flow of current through the ion channels; a method to correct for these discrepancies is described.
- Stephen R. Williams
- & Christian Wozny
-
Article |
Measurement of cochlear power gain in the sensitive gerbil ear
The cochlear amplifier in the inner ear is thought to mediate sensitivity to soft sounds, but this power gain has not been measured directly. Renet aluse an interferometer to measure the volume displacement and velocity of the cochlear partition and demonstrate experimentally that the cochlea amplifies soft sounds.
- Tianying Ren
- , Wenxuan He
- & Peter G. Gillespie
-
Article |
An optimized small molecule inhibitor cocktail supports long-term maintenance of human embryonic stem cells
Stem cell-mediated regenerative medicine requires the development of defined culture systems for the maintenance of human embryonic stem cells. Here, feedback system control is used to identify a combination of three small molecule inhibitors that enables long-term human embryonic stem cell maintenance.
- Hideaki Tsutsui
- , Bahram Valamehr
- & Hong Wu
-
Article |
Development and host cell modifications of Plasmodium falciparum blood stages in four dimensions
ThePlasmodium falciparum parasite that causes malaria has a complex life cycle in human erythrocytes. Using time-lapse three-dimensional imaging, the authors show the intraerythrocytic stages of the parasite and provide new insight into the export of P. falciparumproteins to Maurer's clefts.
- Christof Grüring
- , Arlett Heiber
- & Tobias Spielmann
-
Article |
Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
The integration of microarray and metabolite data is important for understanding the physiology of model organisms. This study demonstrates how the integration of these kinds of data can provide novel insights into the growth and protein metabolism of two different yeast strains.
- André B. Canelas
- , Nicola Harrison
- & Jens Nielsen
-
Article
| Open AccessDeep resequencing reveals excess rare recent variants consistent with explosive population growth
To fully catalogue rare genetic variation in humans, many samples need to be examined. In this study, Coventryet al. resequenced two genes, KCNJ11 and HHEX, in 13,715 humans, and concluded that most of the sequence variation arose recently and that variation is greater than expected.
- Alex Coventry
- , Lara M. Bull-Otterson
- & Charles F. Sing
-
Article |
A plasmid-based multigene expression system for mammalian cells
Fluorescent proteins are widely used in molecular biology to visualize protein expression and localization. Here, Krizet al. describe an efficient and flexible modular plasmid-based eukaryotic expression cloning strategy for the homogeneous expression of several fluorescent proteins in one cell.
- Andrijana Kriz
- , Katharina Schmid
- & Philipp Berger
-
Article
| Open AccessNovel sialic acid derivatives lock open the 150-loop of an influenza A virus group-1 sialidase
The influenza virus life cycle relies on sialidases, which are classified as group-1 or group-2, depending on the flexibility of the '150-loop'. In this study, chemical compounds are developed, which lock open the '150-loop', selectively inhibiting the activity of group-1 sialidases.
- Santosh Rudrawar
- , Jeffrey C. Dyason
- & Mark von Itzstein
-
Article
| Open AccessSecond-generation environmental sequencing unmasks marine metazoan biodiversity
Recent developments in sequencing technologies have provided the opportunity to investigate the biodiversity of ecosystems. Such a metagenomic approach, combined with taxon clustering, is used here to demonstrate that the species richness of a marine community in Scotland is much greater than anticipated.
- Vera G. Fonseca
- , Gary R. Carvalho
- & Simon Creer
-
Article
| Open AccessDynamic evolution of precise regulatory encodings creates the clustered site signature of enhancers
InDrosophila development, DNA enhancers drive gene expression in response to morphogen gradients. Here, Crocker et al. study the evolution of sequences that bind a Dorsal morphogen complex and demonstrate how evolutionary changes in threshold levels have resulted in complex site clustering of DNA elements.
- Justin Crocker
- , Nathan Potter
- & Albert Erives
-
Article |
Image transmission through an opaque material
The challenge of reconstructing the image of an object when viewed through an opaque material is of particular importance for biological tissues. Here, the authors show that it is possible to reconstruct the image of a complex object from interference patterns of multiple wavefronts using phase-shifting interferometry.
- Sébastien Popoff
- , Geoffroy Lerosey
- & Sylvain Gigan
-
Article
| Open AccessIdentification of high-quality cancer prognostic markers and metastasis network modules
There has been great interest in attempting to identify gene expression signatures that predict cancer survival. In this study a new algorithm is developed to analyse gene expression datasets that accurately classify both ER+ and ER− breast cancers into low- and high-risk groups.
- Jie Li
- , Anne E.G. Lenferink
- & Edwin Wang
Browse broader subjects
Browse narrower subjects
- Analytical biochemistry
- Behavioural methods
- Bioinformatics
- Biological models
- Biophysical methods
- Cytological techniques
- Electrophysiology
- Epigenetics analysis
- Experimental organisms
- Gene delivery
- Gene expression analysis
- Genetic engineering
- Genetic techniques
- Genomic analysis
- High-throughput screening
- Imaging
- Immunological techniques
- Isolation, separation and purification
- Lab-on-a-chip
- Mass spectrometry
- Metabolomics
- Microbiology techniques
- Microscopy
- Molecular engineering
- Nanobiotechnology
- Optogenetics
- Proteomic analysis
- Sensors and probes
- Sequencing
- Software
- Optical spectroscopy
- Structure determination