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Tyrosine sulfation in a Gram-negative bacterium
The sulfation of protein tyrosine residues is a common post-translational modification in eukaryotes. Here, Han et al.show that the protein RaxST, produced by a plant bacterium, has tyrosine sulfotransferase activity, demonstrating for the first time tyrosine sulfation in prokaryotes.
- Sang-Wook Han
- , Sang-Won Lee
- & Pamela C. Ronald
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Phylogenetic constraints on ecosystem functioning
It has been proposed that phylogenetic diversity can be used as a proxy to estimate functional diversity and to predict ecosystem functioning. Here, the rapid evolutionary response of marine bacteria is used to study the positive effects of evolutionary history and species diversity on ecosystem productivity.
- Dominique Gravel
- , Thomas Bell
- & Nicolas Mouquet
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| Open AccessStructure of a bacterial voltage-gated sodium channel pore reveals mechanisms of opening and closing
Sodium-gated ion channels open and close in response to the flow of ions. Here, McCusker et al.report the open structure of a sodium-gated ion channel pore from a bacterial homologue, and show, by comparison with the closed structure, that the movement of a C-terminal helix is sufficient to open the channel.
- Emily C. McCusker
- , Claire Bagnéris
- & B.A. Wallace
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Controlled delivery of bioactive molecules into live cells using the bacterial mechanosensitive channel MscL
The bacterial channel protein MscL opens in response to mechanical forces and could be exploited for vesicular-based drug delivery. Doerneret al. show that functional MscL can be expressed in mammalian cells and facilitate the controlled cellular uptake of relatively large, membrane-impermeable bioactive molecules.
- Julia F. Doerner
- , Sebastien Febvay
- & David E. Clapham
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Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription
How DNA cytosine methylation affects gene expression inEscherichia coli is poorly understood. Here, the first genome-wide study of cytosine methylation in E. coliat single-base resolution reveals that cytosine methylation controls the expression of genes during the stationary growth phase.
- Christina Kahramanoglou
- , Ana I. Prieto
- & Aswin S.N. Seshasayee
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| Open AccessThe C-terminal helical bundle of the tetrameric prokaryotic sodium channel accelerates the inactivation rate
Many channels have cytosolic domains which regulate channel function. Irieet al. show that the cytosolic C-terminal region of NavSulP, a prokaryotic voltage-gated sodium channel, forms a four-helix bundle which stabilises the tetrameric channel and accelerates channel inactivation.
- Katsumasa Irie
- , Takushi Shimomura
- & Yoshinori Fujiyoshi
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Growth of non-phototrophic microorganisms using solar energy through mineral photocatalysis
Microbial metabolism is usually considered to be phototrophic or chemotrophic. By showing that light-induced photoelectrons from metal oxide and metal sulfides can stimulate the growth of chemoautotrophic and heterotrophic bacteria, this study indicates that light may be involved in non-phototrophic microbial activity.
- Anhuai Lu
- , Yan Li
- & Hailiang Dong
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Graphene-based wireless bacteria detection on tooth enamel
Graphene is characterized by unique physical properties that offer substantial promise, most notably for electronic applications. Mannooret al. present a wireless graphene-based sensor for detecting bacteria on a range of biological tissues.
- Manu S. Mannoor
- , Hu Tao
- & Michael C. McAlpine
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The GOLD domain-containing protein TMED7 inhibits TLR4 signalling from the endosome upon LPS stimulation
TLRs have a role in innate immunity and TLR4 recognizes lipopolysaccharide on the cell wall of Gram-negative bacteria. Now, Doyle and colleagues show that a transmembrane protein TMED7, similar to aDrosophilahomologue, can negatively control TLR4 signalling, suggesting a conserved role in innate immunity.
- Sarah L. Doyle
- , Harald Husebye
- & Anne F. McGettrick
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| Open AccessInterferon-γ-producing immature myeloid cells confer protection against severe invasive group A Streptococcus infections
Myeloid cells are important in the response to severe infection by invasiveStreptococcusGroup A. In this study, a distinct population of immature myeloid cells with ring shaped nuclei that produce interferon-γ are shown to be important for protection of mice against the early stages of invasive infection.
- Takayuki Matsumura
- , Manabu Ato
- & Kazuo Kobayashi
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Competitive and cooperative metabolic interactions in bacterial communities
Genome-scale metabolic models for bacterial species allow a systematic study of inter-species interactions. Here, competitive and cooperative potential is predicted between 6,903 pairs of species, to explore the role of these interactions in shaping coexistence patterns in natural communities.
- Shiri Freilich
- , Raphy Zarecki
- & Eytan Ruppin
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Specific inhibition of bacterial RNase T2 by helix 41 of 16S ribosomal RNA
The 30S ribosomal subunit ofEscherichia coliinhibits the RNA-degrading enzyme Ribonuclease T2. Using mutational studies and hybrid ribosomes, Kitahara and Miyazaki show that helix 41 of the 30S ribosomal subunit blocks the enzyme activity, suggesting that helix 41 is required for preventing RNase T2 toxicity.
- Kei Kitahara
- & Kentaro Miyazaki
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gp96 expression in neutrophils is critical for the onset of Escherichia coli K1 (RS218) meningitis
E. coliK1 can elude the innate immune system and cause neonatal meningitis. This study shows thatE. coli K1 enters polymorphonuclear leukocytes (PMNs) using gp96 to reduce the oxidative burst, and that PMN-depleted mice are resistant to E. coliK1 infection, suggesting that PMNs permit bacterial survival in the host.
- Rahul Mittal
- & Nemani V. Prasadarao
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Functionalized arrays of Raman-enhancing nanoparticles for capture and culture-free analysis of bacteria in human blood
Detecting bacteria in clinical samples usually requires culture processes that are time consuming and impede rapid diagnoses. Now, a surface-enhanced Raman spectroscopic method is reported that allows the label- and culture-free detection and analysis of bacteria.
- Ting-Yu Liu
- , Kun-Tong Tsai
- & Yuh-Lin Wang
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| Open AccessThe collagen-binding protein of Streptococcus mutans is involved in haemorrhagic stroke
The risk factors associated with both ischemic and haemorrhagic stroke are not fully understood. Here a certain strain of the bacteria,Streptococcus mutans, which expresses a collagen-binding protein, is shown to be associated with haemorrhagic stroke in both animal models and human patients.
- Kazuhiko Nakano
- , Kazuya Hokamura
- & Takashi Ooshima
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| Open AccessAn energy transduction mechanism used in bacterial flagellar type III protein export
A bacterial export gate complex transports flagellar proteins across the cytoplasmic membrane, but the mechanism of this process is unclear. Here, the export gate complex is revealed as a proton–protein antiporter that uses separate components of the proton motive force for different steps of the export process.
- Tohru Minamino
- , Yusuke V. Morimoto
- & Keiichi Namba
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| Open AccessBacterial Pili exploit integrin machinery to promote immune activation and efficient blood-brain barrier penetration
Group BStreptococcuscauses meningitis in newborn infants but how the bacterium crosses the blood-brain barrier is unknown. Here, the bacterial pili adhesion molecule, PilA, is shown to bind to collagen and promote binding of the bacteria to integrins expressed on the blood-brain endothelium.
- Anirban Banerjee
- , Brandon J. Kim
- & Kelly S. Doran
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| Open AccessDust inputs and bacteria influence dissolved organic matter in clear alpine lakes
Dissolved organic matter, the main form of aquatic organic carbon, supports the aquatic food web and regulates light penetration in lakes. This study probes the main influences on the optical properties of dissolved organic matter in a global dataset of alpine and remote lakes revealing latitudinal trends.
- N. Mladenov
- , R. Sommaruga
- & I. Reche
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| Open AccessMicroorganisms from aphid honeydew attract and enhance the efficacy of natural enemies
In this study, a bacterium is identified in the honeydew of aphids, which produces volatile chemicals and attracts hoverflies. The findings could aid the development of pest control systems for aphids.
- Pascal D. Leroy
- , Ahmed Sabri
- & Eric Haubruge
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| Open AccessA bacterial platform for fermentative production of plant alkaloids
Secondary metabolites are widely used in human health and nutrition, but extraction yields from plants are often low. Nakagawaet al. have engineered the metabolism of Escherichia colito develop a fermentation system that produces plant alkaloids from simple carbon sources.
- Akira Nakagawa
- , Hiromichi Minami
- & Hidehiko Kumagai
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| Open AccessThe IncP-1 plasmid backbone adapts to different host bacterial species and evolves through homologous recombination
Plasmids are present in many bacteria and are often transferred between different species causing horizontal gene transfer. By comparing the sequences of 25 plasmid DNA backbones, the authors show that homologous recombination is prevalent in plasmids and that the plasmids have adapted to persist in different host bacteria.
- Peter Norberg
- , Maria Bergström
- & Malte Hermansson
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A bacterial proteorhodopsin proton pump in marine eukaryotes
Proteorhodopsin is used by prokaryotes to generate energy from light. In this study, the authors describe a prokaryote-to-eukaryote horizontal gene transfer of a bacterial proteorhodopsin gene to dinoflagellates, suggesting that these eukaryotes can also use proteorhodopsin to obtain light and produce energy.
- Claudio H. Slamovits
- , Noriko Okamoto
- & Patrick J. Keeling
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| Open AccessRegulation of the co-evolved HrpR and HrpS AAA+ proteins required for Pseudomonas syringae pathogenicity
HrpR and HrpS enhancer-binding proteins ofPseudomonas syringae activate σ54-dependent transcription of the HrpL promoter and are required for type-three secretion pathogenicity. Here, the authors demonstrate that, despite being co-regulated, HrpR and HrpS each have distinct functions for activating σ54.
- Milija Jovanovic
- , Ellen H. James
- & Jörg Schumacher
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| Open AccessAncient origins determine global biogeography of hot and cold desert cyanobacteria
Microorganisms are abundant in many environments and understanding their dispersal between ecosystems is important for ecology and conservation. These authors demonstrate that cyanobacterial populations are specific to hot or cold deserts and that gene flow between different populations does not occur.
- Justin Bahl
- , Maggie C. Y. Lau
- & Stephen B. Pointing
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Insertion sequence-excision enhancer removes transposable elements from bacterial genomes and induces various genomic deletions
Insertion sequences are transposable elements that are found in the genomes of many bacteria. Here, the authors identify an enhancer element that results in a high frequency of excision of insertion elements, and suggest that the excision enhancer element coevolved with the insertion sequences.
- Masahiro Kusumoto
- , Tadasuke Ooka
- & Tetsuya Hayashi
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| Open AccessCryptic prophages help bacteria cope with adverse environments
Up to 20% of bacterial genomes are made up of cryptic prophages, but their function is relatively unknown. In this study, the authors demonstrate that prophages influence the response of the host cell to stress and provide a competitive growth advantage in the presence of antibiotics.
- Xiaoxue Wang
- , Younghoon Kim
- & Thomas K. Wood
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| Open AccessSystems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis
Identifying the transcripts and proteins that fluctuate in response to stimuli provides important information for understanding cell physiology. In this study, 52% of theBacillus subtilispredicted proteome is identified following glucose starvation, revealing further insight into protein dynamics at a global scale.
- Andreas Otto
- , Jörg Bernhardt
- & Dörte Becher
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High rates of photobiological H2 production by a cyanobacterium under aerobic conditions
Hydrogen production using photosynthetic bacteria is an appealing energy source, but typically the bacteria require anaerobic conditions. Here, the authors report a wild-type cyanobacterium strain that shows very high rates of hydrogen production under aerobic environmental conditions.
- Anindita Bandyopadhyay
- , Jana Stöckel
- & Himadri B. Pakrasi
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| Open AccessStretching fibronectin fibres disrupts binding of bacterial adhesins by physically destroying an epitope
Bacteria express adhesive proteins on their surface that recognize fibronectin. Using a mechanical stretch assay and steered molecular dynamics, Chabriaet al. demonstrate that the binding of a bacterial adhesin to fibronectin is mechanoregulated, suggesting that bacteria can sense tissue fibre stretching.
- Mamta Chabria
- , Samuel Hertig
- & Viola Vogel
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| Open AccessA chemical genetic screen in Mycobacterium tuberculosis identifies carbon-source-dependent growth inhibitors devoid of in vivo efficacy
Candidate anti-tuberculosis drugs are often identified in whole-cell screens. Here, Petheet al. show that inappropriate carbon-source selection can lead to the identification of compounds devoid of efficacy in vivo, underlining the importance of developing predictive in vitroscreens.
- Kevin Pethe
- , Patricia C. Sequeira
- & Thomas Dick
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Biogeography and habitat modelling of high-alpine bacteria
The spatial distribution and parameters that affect soil microorganism communities are largely unknown. In this study, bacterial communities up to 240 metres apart are shown to be similar and are affected by soil pH, plant abundance and snow depth.
- Andrew J. King
- , Kristen R. Freeman
- & Steven K. Schmidt
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Peptidoglycan architecture can specify division planes in Staphylococcus aureus
To ensure correct cell division Staphylococci must remember which plane they previously divided along, but the mechanism by which this is achieved is unclear. In this article, using atomic force microscopy, peptidoglycan ribs are reported to mark previous planes of division.
- Robert D. Turner
- , Emma C. Ratcliffe
- & Simon J. Foster
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| Open AccessImaging the nanoscale organization of peptidoglycan in living Lactococcus lactis cells
Peptidoglycans provide bacterial cell walls with mechanical strength. The spatial organization of peptidoglycan has previously been difficult to study. Here, atomic force microscopy, together with cells carrying mutations in cell-wall polysaccharides, has allowed an in-depth study of these molecules.
- Guillaume Andre
- , Saulius Kulakauskas
- & Yves F. Dufrêne
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