Articles in 2019

Aggregation of matter, common in stratified fluid systems, is essential to the carbon cycle and ocean ecology. Although the current understanding of aggregation involves only collision and adhesion, here Camassa et al. reveal a self-assembly phenomenon arising solely from diffusion-induced flows.

The ATP synthase has been suggested to contain the mitochondrial permeability transition pore (mPTP), which has a crucial role in cell death. Here the authors show that reconstituted ATP synthase monomers form voltage-gated and Ca²⁺ -activated channels with the key features of mPTP.

Here, the authors provide an in-depth study of the metabolome in two large population-based prospective cohorts and identify 32 microbial traits associated with various metabolic biomarkers and specific lipoprotein subfractions, providing insights into the role of microbiota in influencing host lipid levels.

The brain predicts upcoming events—a fundamental operation assumed to depend on the event hazard rate and a linearly increasing uncertainty in time estimation. Here, the authors propose a simpler computation based on the reciprocal PDF, which directly determines the uncertainty in time estimation.

Li–O₂ batteries suffer from poor charge transport in the insulating discharge products. Here the authors tackle the issue by pre-depositing a K₂CO₃ layer and then using this to grow Li₂O₂ film on top, enabling enhanced electronic conduction properties and improved overall performance.

Protecting confidential data through fast and scalable cryptographic techniques remains a challenge. Here, the authors demonstrate a cryptographic system via correlated mixing of chaotic waves in irreversible time-varying silicon chips with key distributions in classical optical channels.

The progress in pre-clinical drug discovery for Wilms tumor (WT) is limited by a lack of disease models. Here, the authors develop 45 heterotopic WT patient-derived xenografts including several anaplastic models that recapitulate the biological heterogeneity of WT, and propose this as a resource for evaluating future therapeutics for WT.

The authors here report an ultrathin ionomer membrane as an artificial solid-electrolyte interphase filter that minimizes parasitic reactions and enables stable dendrite-free lithium plating-stripping cycles in a carbonate-based electrolyte. The protected anodes exhibit outstanding coulombic efficiencies at room and elevated (50 °C) temperatures.

Reductions in seawater pH are affecting marine ecosystems globally. Here, the authors describe phenotypic and genetic modifications associated with rapid adaptation to reduced seawater pH in the mussel Mytilus galloprovincialis, and suggest that standing variation within natural populations plays an important role in bolstering species’ adaptive capacity to global change.

The ultrastructural details of the periodic scaffold of actin rings under the plasma membrane of axons remain unknown. Here, the authors combine platinum-replica electron and optical super-resolution microscopy and resolve actin rings as braids made of two long, intertwined actin filaments connected by a dense mesh of aligned spectrins.

Neurotrophin-3 (NT-3) plays a key role in the growth, development, and function of the nervous system. Here the authors show that NT-3-induced propriospino-motoneuron circuit reorganization is critical for locomotor recovery in mice following spinal cord injury.

Sarcopenia is the loss of muscle mass and strength associated with physical disability during ageing. Here, the authors analyse muscle biopsies from 119 patients with sarcopenia and age-matched controls of different ethnic groups and find transcriptional signatures indicating mitochondrial dysfunction, associated with reduced mitochondria numbers and lower NAD⁺ levels in older individuals with sarcopenia.

Advances in nanotechnology make it possible to probe traditionally macroscopic notions of thermodynamics at the mesoscopic scale. Here the authors propose a method that can determine the entropy of a quantum dot system from transport measurements.

Photoactive biomolecules rely on chromophores whose photochemistry depends on the environment. Here, the excited state dynamics of a model for the anionic biochromophore in photoactive yellow protein is investigated by time-resolved photoelectron spectroscopy showing involvement of a non-valence state, and lack of E-Z isomerisation in the gas phase.

In retroviruses, the capsid protein (CA) forms a shell surrounding the viral core. Here the authors combine cryo-electron microscopy with NMR and X-ray crystallography to examine the CA structure from the human endogenous retrovirus HML2 (HERV-K) and determine the structures of four Fullerene CA closed shells that reveal the molecular basis of capsid assembly.

The autophagy receptor p62 mediates the assembly and removal of ubiquitylated protein aggregates by forming p62 bodies. Here, the authors identify an acetylation-dependent mechanism that regulates formation and autophagic clearance of p62 bodies under nutrient-deficient conditions.

Genome-scale engineering is generally limited to single methods of alteration such as overexpression, repression or deletion. Here the authors present a tri-functional CRISPR system that can engineer complex synergistic interactions in a genome-wide manner.

Peripheral nerve damage generates maladaptive neuroplasticity as central networks attempt to compensate for the loss of peripheral connectivity. Here, the authors reverse the aberrant plasticity via vagus nerve stimulation to elicit synaptic reorganization and to improve sensorimotor recovery.

The edematous form of severe acute childhood malnutrition (ESAM) presents with more severe multi-organ dysfunction than non-edematous SAM (NESAM). Here the authors assess genome-wide DNA methylation in buccal cells of SAM children and find that ESAM is characterized by hypomethylation at genes associated with disorders of nutrition and metabolism, including fatty liver and diabetes.

Here, the authors use a molecular epidemiological approach to investigate the frequency and intensity of clustering of HIV with different set-point viral loads and find that frequently transmitted strains in genetic transmission clusters have significantly higher viral loads than nonclustered viruses.