Research articles

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  • In mice, provision of butyrate—a short-chain fatty acid produced by commensal microorganisms during starch fermentation—facilitates extrathymic generation and differentiation of Foxp3+ regulatory T cells, demonstrating that metabolic by-products are sensed by cells of the immune system and affect the balance between pro- and anti-inflammatory cells.

    • Nicholas Arpaia
    • Clarissa Campbell
    • Alexander Y. Rudensky
    Letter
  • Plants defend themselves against attackers by producing bioactive secondary metabolites such as triterpene saponins; here, the endoplasmic-reticulum-associated degradation (ERAD) system is shown to control the activity of HMGR, the rate-limiting enzyme in the supply of the terpene precursor isopentenyl diphosphate, thereby preventing unrestrained saponin production and ensuring the integrity of plant development.

    • Jacob Pollier
    • Tessa Moses
    • Alain Goossens
    Letter
  • Growth of a flagellum outside the bacterial cell proceeds by successive subunit acquisition from the cell export machinery to form a chain that is pulled to the flagellum tip, where subunit crystallization provides the entropic force to drive the process.

    • Lewis D. B. Evans
    • Simon Poulter
    • Gillian M. Fraser
    Letter
  • A chromatin interaction analysis with paired-end tagging (ChIA-PET) approach is used to delineate chromatin interactions mediated by RNA polymerase II in several different stem-cell populations; putative long-range promoter–enhancer interactions are inferred, indicating that linear juxtaposition does not necessarily guide enhancer target selection and prevalent cell-specific enhancer usage.

    • Yubo Zhang
    • Chee-Hong Wong
    • Chia-Lin Wei
    Letter
  • Two private, heterozygous mutations in two functionally related genes, GUCY1A3 and CCT7, are identified in an extended family with myocardial infarction; these genes encode proteins that work together to inhibit platelet activation after nitric oxide stimulation, suggesting a link between impaired nitric oxide signalling and myocardial infarction risk.

    • Jeanette Erdmann
    • Klaus Stark
    • Heribert Schunkert
    Letter
  • Although olivine was expected to occur within the deep, south-pole basins of asteroid Vesta, which are thought to be excavated mantle rocks, spectral data from NASA’s Dawn spacecraft show that it instead occurs as near-surface materials in Vesta’s northern hemisphere.

    • E. Ammannito
    • M. C. De Sanctis
    • J. M. Sunshine
    Letter
  • Populations of millions of colloidal rolling particles are shown to self-organize to achieve coherent motion; comparison between experiment and theory based on the microscopic interactions between these ‘rollers’ suggests that hydrodynamic interactions promote the emergence of the collective motion.

    • Antoine Bricard
    • Jean-Baptiste Caussin
    • Denis Bartolo
    Letter
  • The structure of molten basalt up to 60 GPa by means of in situ X-ray diffraction is described, with the coordination of silicon increasing from four under ambient conditions to six at 35 GPa, and subsequent reduced melt compressibility, which seems to affect siderophile-element partitioning.

    • Chrystèle Sanloup
    • James W. E. Drewitt
    • Wolfgang Morgenroth
    Letter
  • The spliceosome is shown to catalyse splicing through the RNA and not the protein components of the spliceosome; pre-messenger RNA splicing requires U6 snRNA acting by a mechanism similar to that used by group II self-splicing introns.

    • Sebastian M. Fica
    • Nicole Tuttle
    • Joseph A. Piccirilli
    Article
  • Human immunodeficiency virus (HIV)-1 is shown here to depend on the recruitment to the HIV-1 capsid of specific cofactors involved in orchestrating nuclear entry and targeting; when these capsid–cofactor interactions are prevented either by virus mutation, cofactor depletion or pharmacological inhibition of cofactor recruitment, viral DNA can be detected by innate immune sensors.

    • Jane Rasaiyaah
    • Choon Ping Tan
    • Greg J. Towers
    Letter
  • This study shows that in monkeys making context-dependent decisions, task-relevant and task-irrelevant signals are confusingly intermixed in single units of the prefrontal cortex, but are readily understood in the framework of a dynamical process unfolding at the level of the population; a recurrently connected neural network model reproduces key features of the data and suggests a novel mechanism for selection and integration of task-relevant evidence towards a decision.

    • Valerio Mante
    • David Sussillo
    • William T. Newsome
    Article
  • Using in vivo lineage tracing in mice and sorted cells in culture, the ability of stably committed cells to dedifferentiate into basal stem cells in the mouse trachea is investigated: the findings suggest that the dedifferentiation of committed cell types into stem cells may contribute generally to regeneration in higher vertebrates in different organ and injury contexts.

    • Purushothama Rao Tata
    • Hongmei Mou
    • Jayaraj Rajagopal
    Article
  • A prospective longitudinal study identifies the earliest known indicator of social disability in human infancy: decline in attention to others’ eyes in infants who are later diagnosed with autism; the decline is evident already within the first 2 to 6 months of life, which reveals the early unfolding of the disorder but also offers a promising opportunity for the future of early intervention.

    • Warren Jones
    • Ami Klin
    Letter