Abstract
It is important to decipher the diversity and distribution of benthic dinoflagellates, as there are many morphologically indistinct taxa that differ from one another in production of potent toxins. To date, the genus Ostreopsis comprises twelve described species, of which seven are potentially toxic and produce compounds presenting a threat to human and environmental health. In this study, isolates previously identified as “Ostreopsis sp. 3” were sampled from the area where it was first reported, Rarotonga, Cook Islands, and have been taxonomically and phylogenetically characterised as Ostreopsis tairoto sp. nov. Phylogenetically, the species is closely related to “Ostreopsis sp. 8”, O. mascarenensis, “O. sp. 4”, O. fattorussoi, O. rhodesiae and O. cf. siamensis. Previously, it was considered a part of the O. cf. ovata complex but can be distinguished from O. cf. ovata based on the small pores identified on this study, and from O. fattorussoi and O. rhodesiae based on relative lengths of the 2′ plates. No known palytoxin -like compounds were detected in strains investigated in this study. Strains of O. lenticularis, Coolia malayensis and C. tropicalis were also identified and described. This study advances our knowledge of biogeography, distribution, and toxins of Ostreopsis and Coolia species.
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Introduction
Dinoflagellates have been studied extensively due to their potential to synthesize potent toxic molecules and forming harmful algal blooms (HABs), thereby impacting coastal resources and human health1,2,3. Efforts to understand the changing distributions of HAB species in response to ocean climate change are hampered by unclear identifications of taxa and the presence of cryptic and/or pseudo-cryptic diversity amongst several culprit genera3,4,5,6,7. The cosmopolitan HAB genus Ostreopsis Schmidt, occurs worldwide, but mainly in warm waters, and is associated with a variety of benthic/epiphytic habitats8,9. Ostreopsis was first described by Schmidt in 1901 from the Gulf of Thailand, with O. siamensis as the type species10. Traditionally, nine Ostreopsis species had been described based on morphology and thecal plate pattern, namely: O. siamensis Schmidt (1901), O. lenticularis Y.Fukuyo and O. ovata Y.Fukuyo (1981), O. heptagona D.R.Norris, J.W.Bomber & Balech (1985), O. mascarenensis J.P.Quod (1994) emend. Chomérat & J.-P.Quod (2020), O. labens M.A.Faust & S.L.Morton (1995), O. belizeana M.A.Faust, O. caribbeana M.A.Faust and O. marina M.A.Faust (1999). Only O. fattorussoi Accoroni, Romagnoli & Totti (2016), O. rhodesiae Verma, Hoppenrath & Murray (2016), and now the emended O. mascarenensis, O. lenticularis and O. siamensis have been described with both molecular and morphological information11,12,13,14,15,16,17,18,19.
Ostreopsis species are known to co-occur with other epi-benthic genera, such as Coolia Meunier that has a cosmopolitan distribution ranging from tropical to temperate waters20,21,22,23,24,25,26. Coolia species show homology with genus Ostreopsis in thecal plate tabulation, and at one time C. monotis Meunier (1919), the only species described until 1995, was proposed for transfer to Ostreopsis as O. monotis Lindemann (1928)23,27. It was later moved to Glenodinium Ehrenberg based on hypotheca tabulation28. A detailed morphological study conducted by Balech reinstated Coolia as a recognised genus29. Since then seven species have been described, namely: C. tropicalis M.A.Faust (1995), C. areolata Ten-Hage,Turquet, Quod & Couté (2000), C. canariensis S.Fraga (2008), C. malayensis Leaw, P.T.Lim & Usup (2010), C. palmyrensis Karafas, Tomas, York (2015), C. santacroce Karafas, Tomas, York (2015) and C. guanchica H.David, Laza-Martínez, F.Rodríguez & S.Fraga (2020)20,26,30,31,32,33,34.
The combination of genetic and morphometric tools has aided in the description of several new species from these genera, but the highly variable morphology of these species and lack of strains from type locality of certain species has also caused inaccurate or ambiguous species delimination16,19. In the case of Ostreopsis, the morphological variation derived from culture (non-natural) conditions increase the uncertainty. Tentative classifications such as Ostreopsis cf. ovata and O. cf. siamensis and undescribed ribotypes or clades (Ostreopsis sp. 1–9) emerged, the latter from phylogenetic studies19,35,36,37. Several such ‘ribotypes’ are morphologically indistinguishable and remain undescribed. Amongst Coolia spp., molecular data are available for all presently described species, except for C. areolata, but this species can be easily identified using morphological features3,32. Taxonomic identifications are important for species of these genera, as some Ostreopsis species are known to produce numerous palytoxin (PLTX) -like compounds and form HABs, which are known to cause human poisonings and the mortality of benthic invertebrates38,39,40,41,42,43,44,45. Also, four of the eight Coolia species, namely C. tropicalis, C. malayensis, C. palmyrensis, and C. santacroce are known to be toxic33,46,47,48,49.
One approach for resolving these taxonomic issues is to isolate strains from type localities, and to obtain extensive data from them including molecular genetic sequences (e.g. Tillmann et al.50). Chomérat et al.18 examined material from the type locality of Ostreopsis lenticularis and concluded that it was morphologically similar to the original description by Fukuyo13 and genetically similar to “Ostreopsis sp. 5”35,37, determining that “Ostreopsis sp. 5” is O. lenticularis. Phylogenetic and morphological studies of samples from Réunion Island, the type locality of O. mascarenensis by Chomérat et al.16 confirmed that O. mascarenensis forms a new lineage among Ostreopsis species, and it does not correspond to any of the unidentified ribotypes shown in previous studies. However, its relationship with O. fattorussoi, O. rhodesiae, and ribotypes “Ostreopsis sp. 3” and “Ostreopsis sp. 4” remained unclear. Chomérat et al.51 provided morphological and genetic support to separate the “temperate O. cf. siamensis” as a species distinct from “Ostreopsis sp. 6”. Later, Nguyen-Ngoc et al.19 concluded that “Ostreopsis sp. 6” is identical to the original description of O. siamensis, designated an epitype and presented an emended description of the species from Vietnamese waters.
However, there are still several undescribed ribotypes that need to be assigned taxonomically. Amongst them, “Ostreopsis sp. 3” was first reported from the Cook Islands in Sato et al.35 and more recently in Rhodes et al.52 from Rangitāhua Kermadec Islands (an Aotearoa New Zealand territory), 1000 km northeast of Aotearoa New Zealand35,52. The central aim of this study is to investigate “Ostreopsis sp. 3” from the location where it was first reported, the Cook Islands, and other strains isolated from Niue, also located in the South Pacific Ocean (Fig. 1). In November 2014 and several subsequent expeditions, comprehensive sampling of benthic dinoflagellates from macroalgal substrates was carried out at selected lagoon sites around Rarotonga, Cook Islands and Niue. Clonal cultures of Ostreopsis spp. were established and assessed using microscopy analysis and molecular data derived from large subunit ribosomal DNA (LSU rDNA; D1-D3 and D8-D10 regions) and internal transcribed spacer regions and 5.8S rRNA gene (ITS/5.8S rDNA) regions. In addition, co-occurring O. lenticularis, C. malayensis and C. tropicalis were also identified and described from these samples. The toxin production of these isolates was investigated using liquid chromatography-tandem mass spectrometry (LC–MS/MS). Ostreopsis strains were screened for PLTX-like compounds and Coolia strains were screened for gambierone and 44-methyl gambierone (44-MG). Altogether, the morphological, phylogenetic, and toxicological data allowed to describe “Ostreopsis sp. 3” as a new species, Ostreopsis tairoto sp. nov, and updated the current knowledge of biodiversity and distribution of potentially toxic benthic dinoflagellates in sub-tropical reef systems.
Results
Twelve Ostreopsis and six Coolia isolates were established in this study (Tables 1 and 2). Six Ostreopsis isolates were identified as the previously described Ostreopsis lenticularis, which is the first report and description from the Cooks Islands. Morphological features of these strains are comparable to those previously described for this species. Five strains of Coolia tropicalis and one strain of C. malayensis are also described in this study. Furthermore, strains of a previously reported ribotype, “Ostreopsis sp. 3” were isolated from Cook Islands and Niue and named Ostreopsis tairoto sp. nov. based on support of molecular and morphological data.
Morphology of Ostreopsis species
Description of Ostreopsis tairoto sp. nov. Verma, Hoppenrath, Smith, Rhodes & Murray
The strongly anterio-posteriorly flattened cells were ovate (drop/tear-shaped) and ventrally tapering (Fig. 2), variable in shape and relative cell width (Figs. 2A–G, 3A,B and 4A–C). Cells were 40–76 µm in dorso-ventral (DV) depth (mean: 54.8 ± 7.9 µm s.d., n = 15 cells each from 3 separate strains) and 21–44 µm wide (W) (mean: 30.6 ± 5.5 µm s.d., n = 15 cells each from 3 separate strains), and varied from 1.33 to 2.6 (mean: 1.8, n = 15 cells each from 3 separate strains) in DV:W ratio (Table 3). Cells contained golden-brown chloroplasts, except for the ventral area (Fig. 2A–C). The nucleus was located dorsally (Fig. 2A,B,D,F,G). Pusules were recorded (Fig. 2B). The plate formula was APC 3′ 7′′ ?c ?s 5′′′ 2′′′′ (Figs. 2H–K, 3 and 4A–C). The narrow, slightly curved and elongated apical pore complex (APC) was located parallel to the left mid-lateral to dorsal cell margin (Figs. 2I,J and 3). The apical or outer pore plate (Po) was about 6.5–9.0 µm long (n = 4), had a slit-like apical pore and less thecal pores in an irregular row below the apical pore and more scattered thecal pores above it (Supplementary Fig. 1E). The first apical plate (1′) was long, hexagonal and located left to the centre of the epitheca (Figs. 2H,I and 3A,B). The characteristic second apical plate (2′) was narrow and elongated, about 1.5 times as long as the Po plate (Fig. 3D,E and Supplementary Fig. 1F). Plate 2′ completely separated plate 3′ from 3′′ (Fig. 3D,E). The third apical plate (3′) was pentagonal, had a suture with plate 6′′, and did not touch plate 3′′ (Fig. 3A,D). In the precingular series plate 1′′ was the smallest and 6′′ the largest (Figs. 2H and 3A,B). All precingular plates were four-sided, except the second (2′′) and sixth (6′′) that were pentagonal (Fig. 3A,D). Plate 5′′ was not in contact with plate 1′ (Fig. 3A,D). The cingulum was narrow, deep, and slightly undulated (Figs. 2J and 3C). Cingular plates could not be documented. The postcingular plate series consisted of a very small first (1′′′) plate, and four large plates (2′′′-5′′′) (Figs. 2K and 4A–C). The two antapical plates were of unequal size, 1′′′′ relatively small and 2′′′′ pentagonal and nearly symmetrical, relatively narrow with nearly parallel sides (sutures with 2′′′ and 5′′′) (Figs. 2K and 4A–C). The sulcal plates could not be determined. Thecal plates were smooth with scattered pores of medium size (0.19–0.27 µm in diameter, n = 20) with an internal sieve-like structure of small pores (Fig. 4D and Supplementary Fig. 1C,D). Only with very high magnification scattered small pores (about 0.06–0.08 µm, n = 5) in lower density were observed (Fig. 4D).
Holotype: SEM-stub (designation CEDiT2022H147) prepared from strain O1C6 and deposited at Senckenberg am Meer, German Centre for Marine Biodiversity Research, Centre of Excellence for Dinophyte Taxonomy, Germany. Cells from the holotype are shown in Supplementary Fig. 1.
Reference material: Lugol-fixed subsample of strain O1C6 (designation CEDiT2022I148) deposited at the Senckenberg am Meer, German Centre for Marine Biodiversity Research, Centre of Excellence for Dinophyte Taxonomy, Germany.
Type locality: Titikaveka Beach (21°16′24" S; 159°44′53" W) Rarotonga, Cook Islands.
Etymology: Tairoto is the Cook Islands Māori term for ‘from/of a wide lagoon’, i.e. isolated/ inhabitant of sea inside the lagoons of Rarotonga, Cook Islands, which is the type locality of this species.
Ostreopsis lenticularis Y.Fukuyo
The photosynthetic cells were anterio-posteriorly flattened, lenticular, broadly ovate (drop-shaped) to almost round and ventrally tapering in apical and antapical views (Fig. 5). The field samples measured 78.1–87.5 μm in depth (n = 12), and 55.5–82.9 µm in width (n = 12). The mean DV:W ratio was 1.24 (1.0–1.57, n = 12). The nucleus was located dorsally (Fig. 5A,D). One or two pusules were recorded (Fig. 5B,D,E). The thecal plate pattern was: APC 3′ 7′′ ?c ?s 5′′′ 2′′′′ (Figs. 6 and 7). The slightly curved and elongated apical pore complex (APC) was located parallel to the left dorsal cell margin (Fig. 6C,D,G). The apical (or outer) pore plate (Po) was about 11.5–18.0 µm long (n = 7). The first apical plate (1′) was long, hexagonal and most of it located left to the centre of the epitheca (Fig. 6B–F). The second apical plate (2′) was narrow and slightly longer as the Po plate (Fig. 6D,G). The third apical plate (3′) had a short suture with the Po plate (Fig. 6B–D,G). In the precingular series plate 1′′ was the smallest and 6′′ the largest (Fig. 6A–F). The suture between plates 2′′ and 3′′ was located at about half Po plate length (not shown). Plate 5′′ was not in contact with plate 1′ (Fig. 6A,B,D). The cingulum was narrow, deep, and not undulated (Fig. 6A,C–F). Cingular and most sulcal (Fig. 7B) plates were not observed. The postcingular plate series consisted of a small first (1′′′) plate and four large plates (2′′′-5′′′) (Fig. 7A,C,D). The two antapical plates were of unequal size, 1′′′′ smaller and 2′′′′ being asymmetrical and relatively large (Fig. 7A,C,D). The left side of the posterior sulcal plate (Sp) was in contact with the 1′′′′ plate and its posterior end with the 2′′′′ plate (Fig. 7B). Thecal plates were smooth with scattered large pores (0.35–0.51 µm in diameter, n = 20) and small pores (0.06–0.08 µm in diameter, n = 19) (Fig. 8A–C). Large thecal pores had an inner covering perforated by irregular openings, also known as internal sieve-like structure (Fig. 8D). A few irregularly scattered pores of a medium size (0.20–0.29 µm in diameter, n = 20) were recorded (Fig. 8A,B), in one case arranged in a cluster (Fig. 8A).
Morphology of Coolia species
Coolia malayensis Leaw, P.T.Lim & Usup
The cells were globular (Fig. 9), 22.5–30 μm long (mean: 26.8 ± 2.9 μm s.d., n = 12), 18.5–24.6 μm wide (mean: 22.3 ± 2.5 μm s.d., n = 12), and 16.2–25.9 μm deep (mean: 21.8 ± 1.9 μm s.d., n = 8); containing many chloroplasts (Fig. 9B). One or two pusules can be present (Fig. 9C,E,G). Nucleus located in the dorsal episome (Fig. 9F). The thecal plate pattern was: APC 3′ 7′′ ?c ?s 5′′′ 2′′′′ (Fig. 10). The first apical plate (1′) was narrow oblong and located on the left epitheca side (Fig. 10A–C). The third apical plate (3′) was pentagonal (Fig. 10A,B,L) with wide contact (suture) to plate 5′′. The sixth precingular plate (6′′) was the widest and largest plate in the epitheca (Fig. 10A,C,I,J). The seventh precingular plate (7′′) was small and pentagonal (Fig. 10C,J,K). The length of the apical pore plate was about 5.0–6.4 µm (n = 5). Narrow, descending cingulum (Fig. 10G–K). Plate 2′′′′ was in contact with 1′′′′ but not with 2′′′ (Fig. 10D,E,K). The short sulcus was bordered by sulcal lists extending from plates 5′′′, 2′′′′, 1′′′′ and 1′′′ (Fig. 10K). Thecal plates were smooth with scattered round (to oval) thecal pores (Fig. 11A). Most pores were 0.22–0.33 µm in diameter (n = 20), but few pores were slightly smaller, 0.16–0.20 µm (n = 8) in diameter (Fig. 11B).
Coolia tropicalis M.A.Faust
The cells were globular to subspherical, 35.3–51.2 μm (mean: 41.8 ± 6.0 μm s.d., n = 15) long, 32.5–40.2 μm (mean: 36.1 ± 2.8 μm s.d., n = 15) wide, and 26.2–29.1 μm (mean: 27.9 ± 1.3 μm s.d., n = 8) deep; containing chloroplasts (not shown). The thecal plate pattern was: APC 3′ 7′′ ?c ?s 5′′′ 2′′′′ (Fig. 12). The first apical plate (1′) was large, widening ventrally and located centrally on the ventral epitheca side (Fig. 12A–C). The sixth precingular plate (6′′) was nearly the same size as plate 1′ (Fig. 12A,B). The seventh precingular plate (7′′) was pentagonal, large and wide (Fig. 12A–C,H). Plate 2′′′′ was in contact with 1′′′′ and 2′′′ (Fig. 12D–H). Narrow, descending cingulum (Fig. 12G–I). The short sulcus was bordered by sulcal lists extending from plates 5′′′, 2′′′′, 1′′′′ and 1′′′ (Fig. 12D–H). Thecal plates were smooth with scattered round thecal pores (Figs. 12 and 13). Most pores were 0.25–0.38 µm in diameter (n = 14), but very few pores were slightly smaller, 0.19–0.24 µm (n = 5) in diameter (Fig. 13). The length of the apical pore plate (Po) was about 5.7–7.3 µm (n = 6) and of the apical pore about 3.7–5.1 µm (n = 6). The Po plate had round thecal pores surrounding the slit-like apical pore (Fig. 13A–C). Thecal pores had an inner covering perforated by tiny irregular openings, equivalent to internal sieve-like structure of small pores described for other species (Fig. 13D).
Genetic divergence and molecular phylogeny
ML and BI phylogenetic analyses were performed on alignments of Ostreopsis strains isolated in this study, with additional reference sequences from Genbank, and identified 14, 12 and 13 strongly supported clades based on ITS/5.8S, D1-D3 and D8-D10 rDNA analyses respectively (Fig. 14A–C). Six strains of Ostreopsis tairoto clustered together and formed a fully supported monophyletic clade (BI = 1.00; ML = 100) (Fig. 14A–C). Both ML and BI analyses gave the same tree topology and identical relationships among Ostreopsis clades. Hence, only the majority-rule consensus tree of the ML analysis is shown (Fig. 14A–C). Based on the ITS/5.8 s rDNA analysis, the species is most closely related to Ostreopsis sp. 8, with the genetic p distance between them calculated as 19.0 ± 3.2%. This species also appears to be closely related to Ostreopsis mascarenensis, “O. sp. 4”, O. fattorussoi, O. rhodesiae and O. cf. siamensis (Table 4 and Fig. 14A), which is based on both ITS/5.8 s as well as the LSU rDNA analyses. The genetic p distance between the O. tairoto isolates, that was used in the phylogenetic analyses varied from 4.8 ± 1.2, 2.4 ± 0.5 to 0.3 ± 0.2% in ITS/5.8S, D1-D3 and D8-D10 rDNA analyses respectively (Table 4). The strains isolated from Niue formed a separate sub-clade within O. tairoto exhibiting minor genetic variation compared to the Cook Islands strains. In addition, six O. lenticularis strains were identified and grouped with sub-clade I of O. lenticularis which are described in Chomérat et al.18 (Fig. 14A–C). Also, five strains of Coolia tropicalis and one strain of Coolia malayensis were identified based on ITS/5.8S and D1-D3 LSU regions (Fig. 15A,B).
Toxin analyses
LC–MS/MS analysis of oxidized cellular extracts from Ostreopsis strains did not detect any PLTX-like compounds above the limit of detection (LOD = 0.01 pg/cell) (Table 1). Analysis of gambierones produced by the Coolia strains revealed that four out of the five Coolia tropicalis strains had similar 44-MG cell quotas (Table 2), whereas no 44-MG was detected from one strain and the single strain of C. malayensis. C. tropicalis strains that yielded quantifiable amounts of 44-MG were also screened for gambierone, but no gambierone detected in any of those strains (LOD = 0.05 pg/cell) (Table 2).
Discussion
Morphological comparisons among Ostreopsis and Coolia species
Ostreopsis morpho-species identification is often difficult, as many species show significant intra-specific morphological plasticity and a lack of striking species-specific characters – suggesting they are cryptic or semi-cryptic species3,18. A given species can also encompass a wide genetic variability that is often linked to biogeography (cryptic intra-specific diversity recognized as ribotypes)18,35,36,37,53. The new species Ostreopsis tairoto sp. nov. belongs to a clade including the morphologically characterized taxa O. cf. ovata, O. cf. siamensis (sp. 9), and O. rhodesiae, as well as “ribotypes sp. 1, sp. 2, sp. 7, and sp. 8”. The closest sister lineage was O. fattorussoi (Figs. 14 A-C). Ostreopsis mascarenensis in the most basal position of this Ostreopsis subclade seems to be related as well. These species share several thecal plate characters (Table 3).
A curved suture between plates 1′ and 3′ was described as characteristic distinguishing feature of O. fattorussoi11. This suture can be curved also in O. cf. ovata54,55,56 and Ostreopsis tairoto (Figs. 2A, 3A). The opinion that “the curved suture … makes plates 1′ and 3′ approximately hexagonal while in the other Ostreopsis species they are pentagonal…” in Accoroni et al.11 is misleading. Counting sutures they are hexagonal also in other species (Table 3), but as the very short suture with the Po plate is often not recognized in lower magnification, it looks pentagonal on most images. Furthermore, the relative position of plate 1′ on the left epitheca half and the shape of plate 6′′ is not unique (this study; Verma et al.12). Ostreopsis rhodesiae cells can be of the same size as Ostreopsis tairoto and O. fattorussoi cells and it will be nearly impossible to identify such a cell by its morphology. The Po lengths can also overlap but the relative lengths of the 2′ plates might distinguish Ostreopsis tairoto from O. fattorussoi and O. rhodesiae (Table 3). Plate 2′′′′ was nearly symmetrical in Ostreopsis tairoto but few cells with asymmetrical 2′′′′ plate were observed in culture so that this possible distinguishing character is not reliable. Whether the plate is rather narrow or wide is relative for all three species and variable to a certain degree. The thecal pore sizes could be a species-specific character, but an intense study would be necessary to elaborate this, and it isn’t a character suitable for use in light microscopic identification. In conclusion, an unambiguous identification of these species is only possible by molecular methods. DNA sequencing has been used to distinguish and describe several protistan species with few or variable morphological features, in order to characterize protist lineages that principally lack morphological characteristics, and to identify and study specific protistan taxa in complex natural assemblages57,58,59,60. The identification of marine microalgae, including HAB species, has mostly relied on microscopic observations in the past. However, methods based on morphological characteristics have limited resolutions61,62. First, species identification based on traditional microscopic methods is restricted to organisms with well-documented morphological characteristics. Furthermore, these methods may misidentify organisms that are fragile to be fixed for preservation63. Also, cryptic species cannot be accurately distinguished during routine light microscopic observations12,60,64. In addition, taxonomic identification is extremely time-consuming and requires well-trained specialists. Therefore, morphological analyses alone cannot provide a complete description of microalgal diversity57,59,65,66. However, there is yet no taxonomic consensus about describing new species without showing diagnostic (distinctive) phenotypic traits. Hoppenrath67 discussed both the technical and conceptual the problems of one species concept for dinoflagellates. As discussed for protists in general by Boenigk et al.68, also for dinoflagellates, a consensus approach for species definitions may emerge within groups, but one approach is unlikely to encompass the whole dinoflagellate lineage.
Investigating the two species O. cf. siamensis and O. cf. ovata, David et al.69 found that the main differential feature between them was the presence of thecal pores of two size classes in the former and only one in the latter. A great variety of cell sizes and shapes were observed for both species69. Cells of O. cf. siamensis were reported to be more flattened than cells of O. cf. ovata36,70,71. Ostreopsis tairoto cells seem to overlap in size with O. cf. ovata O. cf. siamensis populations (Table 3). A distinguishing feature between Ostreopsis tairoto and O. cf. ovata could be the small pores documented for the new species (present study). Whether O. cf. ovata really has only one size class of pores is uncertain as Aligizaki and Nikolaidis70 documented a very wide range of thecal pore sizes (0.07–0.32 µm) and labelled a minute pore on their Fig. 4F. The ribotype “Ostreopsis sp. 1” was described as O. cf. ovata from Korea72. Cells were in the width range of Ostreopsis tairoto but less deep. The Po plate was shorter (4.8–6.8 µm) and plate 2′ only about 1.25 times the Po length (Kang et al.72; Fig. 3C). Ostreopsis mascarenensis is morphologically distinct by its large size (Table 3) and the conspicuously flattened to slightly concave epitheca16.
Ostreopsis lenticularis was originally described as relatively large species without cingulum or cell undulation and with smooth thecal plates possessing pores of two size classes13. Chomérat et al.18 re-investigated O. lenticularis at the type locality and provided an unambiguous description (but no formal epitypification), so that the species now can be clearly identified. The problems related to past identifications and probable synonymy, were discussed in detail by Chomérat et al.18. The morphological features observed in this study were generally in agreement with the species description13,18, except of the recognition of a third size class of pores. These medium sized pores were not visible on published scanning electron micrographs18. But their numbers were few and they were irregularly scattered so that it is possible that they were identified as the smallest pores of the large size class in previous studies. Oblong or kidney-shaped large pores were described for strains isolated from the South China Sea in Zhang et al.54 and interpreted as possible culturing plasticity by Chomérat et al.18.
For Coolia malayensis the nucleus was originally described to be located in the hyposome31. Its position was interpreted to be in the episome in the present study (Fig. 9F). The third apical plate (3′) was pentagonal (Fig. 10A,B,L) with wide contact (suture) to plate 5′′. It was described as quadrangular without contacting plate 5′′ by Leaw et al.31, but that was not clearly shown in the original SEMs, only in the drawing. Thecal pores of slightly smaller size were also visible in Fig. 4C in Leaw et al.31. Coolia tropicalis was re-described by Mohammad-Noor et al.30. The Po plate was shorter in the morphologically investigated strain from Rarotonga (about 5.7–7.3 µm compared to 7.2–12.0 µm for cells from Malaysia, Indonesia, Belize, and Australia; Mohammad-Noor et al.30). Plate 2′′′′ was in contact with 1′′′′ and 2′′′ in agreement with the original description20, the re-description30 and further reports (e.g. Momigliano et al.73; Nguyen74), but not as shown in Hoppenrath et al.3, Fig. 31.
Phylogenetics of Ostreopsis and Coolia species
Results from microscopic observations and phylogenetic analyses confirm the presence of two Ostreopsis species in the samples studied from Rarotonga, Cook Islands and Niue. Our molecular phylogenies show a similar topology for ITS/5.8S, D1–D3 and D8–D10 of the LSU rDNA regions, albeit with different support. The phylogenetic analyses revealed the discovery of O. tairoto, previously an undescribed clade referred to as “Ostreopsis sp. 3” by Sato et al.35 and subsequent authors, that diverged from other clades with full nodal support. Isolate CAWD184 was originally reported in Sato et al.35 and was labelled “Ostreopsis sp. 3” with the report of sequences from the ITS/5.8S and D8-D10 LSU rDNA regions. Major sampling trips were carried out around the lagoons of Rarotonga (Fig. 1) in November 2014 and June 2017, during which several Ostreopsis strains were isolated from the green macroalga Halimeda sp. Some of these strains were genetically identical and belong to the unique “Ostreopsis sp. 3” ribotype. This species also appears to be closely related to “Ostreopsis sp. 8”, O. mascarenensis, “O. sp. 4”, O. fattorussoi, O. rhodesiae and O. cf. siamensis. So far, this species has only been reported in the South Pacific, namely from Cook Islands, Niue, and Kermadecs Islands, suggesting that the species is more suitable to warm tropical waters. A similar trend has also been suggested for other Ostreopsis species such as O. siamensis19 (previously known as “Ostreopsis sp. 6”), and O. lenticularis (Chomérat et al.18) which was also isolated in this study.
Considerable levels of intra-specific variations amongst O. tairoto strains in the ITS/5.8S and LSU rDNA regions were observed, with strains isolated from the same island location clustering together (Figs. 14A–C). Similar levels of intra-specific variation in ribosomal genes have also been reported in other Ostreopsis species, such as Ostreopsis siamensis and O. cf. ovata, and may suggest the existence of cryptic/ pseudo-cryptic species amidst these clades19. Low levels of intra-specific variation have also been observed in LSU rDNA region in O. cf. siamensis, O. lenticularis and O. rhodesiae12,18,75. Sato et al.35 suggested that the evolutionary divergence within the ITS region in an Ostreopsis species could be reflective of wider genomic heterogeneity, indicating a wide adaptive potential to changing environments. If this were true, it would suggest that O. tairoto may be more genetically diverse and have a greater adaptive potential than its more genetically homogeneous counterparts. It has been suggested that genetic p distances of > 0.040 in the ITS rDNA region could be used to delineate dinoflagellate species76. While intra-specific genetic diversity in this study was found to be 0.048 (Table 4), all subclades cluster together in a monophyletic clade, therefore, we see presently no reason for subdividing O. tairoto. Also, such differentiation would not be complete without the identification of compensatory base changes in the ITS2 secondary structure, as demonstrated with the Alexandrium ostenfeldii complex77. However, due to the high genetic variability in the ITS region of O. tairoto, we cannot exclude that future studies may reveal that O. tairoto should be divided into several cryptic/ pseudo-cryptic species.
In addition, Coolia malayensis and C. tropicalis were also isolated with Ostreopsis species in this study. Both species are known to occur worldwide in tropical waters and have been reported from Rarotonga lagoons previously22. The phylogenetic trees based on partial D1-D3 LSU rDNA and ITS/5.8S rDNA sequences yielded the same branching patterns and main clades previously reported in the literature, with C. monotis, C. malayensis and C. santacroce as closely related species, and C. palmyrensis emerging as a basal lineage to those species21,30,31,33,34. The C. canariensis complex yielded three and four well-delimited phylotypes based on ITS/5.8S and D1-D3 rDNA analyses respectively, following Nascimento et al.78 and Phua et al.79, and were closely related to the newly described C. guanchica34. C. tropicalis emerged as the basal clade in both analyses (Fig. 15A,B).
Toxin analyses
Strains of Ostreopsis tairoto and O. lenticularis were not identified to produce any known PLTX -like compounds based on the LC–MS/MS analysis used in this study80 (Table 1). Chomérat et al.18 screened 19 strains of O. lenticularis from French Polynesia and none of the tested strains showed toxic activity on neuroblastoma cells, while LC–MS/MS analyses performed on the strains from Tahiti Island (i.e. the type locality) confirmed that PLTX and related structural analogues were below the LOD. All strains of Ostreopsis tairoto that have been screened to date have not produced PLTX-like compounds above the LOD of the LC–MS/MS method52,80. Numerous PLTX-like compounds (such as isobaric PLTX, ovatoxins-a–k, ostreocin-A, -B, -D, -E1 and mascarenotoxin-A–C) have been described from several Ostreopsis species to date45,81,82,83,84. However, the LC/MS–MS approach used in our study monitors sub-structures generated by the oxidative cleavage of large PLTX-like compounds and cannot differentiate between many of the toxin analogues. However, all PLTX-like compounds have a common sub-structure that is monitored during the analysis. The absence of this sub-structure in the Ostreopsis isolates tested during this study supports the statement that these strains do not produce any PLTX-like compounds.
44-MG was detected in three out of the five C. tropicalis strains analysed in this study. However, the C. malayensis strain tested in this study did not produce 44-MG. 44-MG has been detected from several Gambierdiscus species/strains, namely G. australes, G. belizeanus, G. caribaeus, G. carpenteri, G. cheloniae, G. holmesii, G. honu, G. lapillus, G. lewisii, G. pacificus and G. polynesiensis85. The compound has also been detected in Fukuyoa species, C. malayensis and C. tropicalis85. Toxicity within the genus Coolia was first reported in the early 1980s, based on hemolytic activity via in vitro assays, although no toxicity to mice and fish was registered for the same methanol extract86. Since then, this genus of benthic dinoflagellates has been considered potentially toxic3. According to Boente-Juncal et al.87, 44-MG exhibits similar biological activities to gambierone and CTX-3B, although at a much lower rate, leading to the decreased viability of undifferentiated neuroblastoma (N2a) cells and modified expression of excitatory neurotransmitter receptor subunits. However, in contrast, the study by Murray et al.85 demonstrated 44-MG had an LD50 by intraperitoneal injection to mice of 20–38 mg/kg, which is essential non-toxic. This finding has been supported by a recent study that Stuart et al.88 conducted, where 44-MG was assessed using the N2a cell-based assay and only displayed a minor toxic effect when dosed at the highest concentration trialled (4.8 µg/mL).
Materials and methods
Sample collection, strain establishment and growth
Samples were collected from several sites at Rarotonga, Cook Islands and Niue between November 2014 and July 2019 during research expeditions as described in Smith et al.89 (Fig. 1 and Tables 1,2). Macroalgal substrates were collected in sealable plastic containers with local sea water (approx. 500 mL each) from which epiphytic dinoflagellate cells were detached by vigorous shaking. Germanium dioxide (approx. 1% final conc.) (Sigma-Aldrich) was added to the suspended phytoplankton community to suppress diatom growth. Single Ostreopsis and Coolia cells were isolated under an inverted light microscope and transferred to a drop of clean filtered seawater. The transfer was repeated until no nano- and pico-planktonic cells were observed in the cell’s vicinity under the microscope. Monoclonal isolates of Ostreopsis and Coolia were established in 5 × diluted f/2 medium90 in a 24–multi well culture plate (Corning Life Sciences, Durham, USA) with 1 mL medium, and transported back to the laboratories at University of Technology Sydney, Australia and Cawthron Institute, New Zealand. On return to the labs, cultures were grown at 25 °C at a salinity of 35, with 40–100 μmol photons m−2 s−1 irradiance (12:12 h L:D). Cultures were maintained in the same conditions thereafter and subcultured once every 3–4 weeks.
Microscopy
Living and fixed cells were picked under a Leica DMIL inverted microscope (Leica Microsystems GmbH, Wetzlar, Germany), placed on an object slide and observed with a Leica DMRB (Leica Microsystems GmbH, Wetzlar, Germany) equipped with differential interference contrast optics at 400 × and 640 × magnification with oil immersion objectives. Digital photos were taken using a Leica DFC420C camera (Leica Microsystems GmbH, Wetzlar, Germany). Fixed cells of the new Ostreopsis species were stained with Solophenyl Flavine 7GFE 500 (Ciba Specialty Chemicals, High Point, North Carolina, USA) as described by Chomérat et al.91 and thecal plates visualized by epifluorescence microscopy. Cell dimensions were measured under 400 × using a calibrated eyepiece of Eclipse TS100 inverted microscope with bright field optics (Nikon, Hilton, Australia). Cells were harvested from the culture medium via centrifugation and fixed in 1% Lugol solution (Sigma-Aldrich) to measure the depth = dorso-ventral diameter (DV) and transdiameter width (W) using ImageJ v1.4892.
For SEM, the cultures and field samples were fixed in 1% Lugol solution and stored in the dark. Cells were placed on a 5 µm Millipore filter, rinsed in distilled water, and dehydrated in a series of increasing ethanol concentrations (30, 50, 70, 85, 95, 100%), followed by chemical drying with hexamethyldisilazane at room temperature for 20 min and finally at 50 °C in a drying oven for 5 min. The sample/filter was mounted on a stub and sputter coated with gold–palladium (Bal-Tec SCD 050; BAL-TEC Präparationsgerätevertrieb, Wallof, Germany). Cells were observed using a Tescan VEGA3 microscope (Elekronen-Optik-Service GmbH, Dortmund, Germany) at 15 kV using the SE detector.
DNA extraction, PCR amplification and phylogenetic analyses
Genomic DNA from cultures held at Cawthron Institute, New Zealand was extracted according to the protocols described in Smith et al.89, i.e. dinoflagellate cultures were centrifuged (50 mL; 542g; 10 min; room temperature) and DNA extracted using PowerSoil DNA isolation kit (Qiagen) as per manufacturer’s instructions. DNA from cultures maintained at UTS was extracted using modified 3% Cetyltrimethyl ammonium bromide (CTAB) buffer as described in Verma et al.12. Briefly, cell pellets were harvested via centrifugation (15 mL; 2300g; 10 min; room temperature) and lysed using 500 µL of buffer on a heat block at 68 °C for 2 h. The aqueous layer was separated using 24:1 chloroform: isoamyl alcohol (Sigma-Aldrich) and precipitated in 2-propanol (Sigma-Aldrich) and 3 M sodium acetate (pH 5.2) (Sigma-Aldrich). The DNA pellet was washed with 70% ethanol (Sigma-Aldrich) and vacuum dried to remove any traces of ethanol. Sterile Milli-Q water was added to DNA pellets and were stored at 20 °C until further analysis.
The partial regions of LSU rRNA gene (D1-D3 and D8-D10 regions) and the internal transcribed spacer regions and 5.8S rRNA gene (ITS/5.8S) were amplified and sequenced using primers and protocols described in Verma et al.93 (Supplementary Table 1). Briefly, all PCR reactions were performed in 25 μL reaction volumes containing 12.5 μL of 2 × Immomix (Bioline, Sydney, Australia), 7.5 pmol of each primer, 1 μg/μL of BSA (Biolabs, Arundel, Australia), 1 μL of template DNA and PCR grade water to give the final volume. Thermocycling conditions consisted of an initial denaturing step of 95 °C for 10 min, followed by 35 cycles of 95 °C for 20 s, 30 s annealing (Supplementary Table 1), 72 °C for 1 min and a final extension of 72 °C for 7 min. PCR products were purified with DNA Clean and Concentrator (Zymo Research, Irvine, USA) according to the manufacturer’s protocol and sequenced using a commercial service (Macrogen Inc., Seoul, Korea).
Analyses on all regions of rDNA were conducted separately. The forward and reverse sequences were trimmed, aligned, and visually refined using Geneious Prime v2020.0.594. The obtained sequences were aligned with reference sequences retrieved from the National Center for Biotechnology Information (NCBI) GenBank database (http://www.ncbi.nlm.nih.gov). Multiple sequence alignments were performed using ClustalW v1.6 program as implemented in MEGA v795. Substitution models were selected for each dataset based on lowest Bayesian information criterion (BIC) as a measure of the relative quality of the models using MODELTEST96. Phylogenetic analysis was performed using both a maximum likelihood (ML) and Bayesian inference (BI) approach. ML trees were produced in MEGA v7 using general time reversible (GTR) + gamma (G) + invariant sites (I) with 5 gamma categories substitution model for all sequence analyses. Nodal support of the ML tree was estimated via bootstrap algorithm with 1,000 replications. Bayesian analysis was performed using MrBayes v3.2.297 as implemented in Geneious Prime v2020.0.5 using general time reversible model (GTR) + G model for all analyses. Four independent Markov Chain Monte Carlo (MCMC) simulations were run simultaneously for 2 × 106 generations. Trees were sampled every 1 × 103 generations and 1 × 103 trees were discarded as burn- in. Genetic distance (pairwise uncorrected p distance) was estimated from the ITS/5.8S, D1-D3 and D8-D10 LSU rDNA sequences using the p distance model and bootstrap procedure (1 × 103 replicates) in MEGA v7. All positions containing gaps and missing data were eliminated for the analyses.
Toxin analyses
Ostreopsis and Coolia cell pellets were harvested in late stationary phase via centrifugation (50 mL; 2300g; 10 min; room temperature) to obtain a cell pellet of approx. 1 × 106 cells. The growth medium was decanted, and the resulting pellets were frozen at − 20 °C until further analysis. Toxin extractions were completed at the Cawthron Institute using methods described in Selwood et al.80 for screening of PLTX-like compounds, and Murray et al.98 for screening of gambierone and 44-MG respectively.
Briefly, Selwood et al.80 monitors substructures of PLTX-like compounds that are generated via oxidative cleavage, using periodic acid, of vicinal diol groups present in intact toxin molecules. This yields an amino-aldehyde common to known PLTX-like compounds, used for quantification, and an amide-aldehyde that varies depending on the toxin analogue. A commercially available PLTX standard was used to generate a calibration curve and enable unambiguous identification of the oxidation products. The limit of detection (LOD) was determined as 0.5 ng/ml for the PLTX amine fragment, which equates to 0.01 pg/cell in an extract. The relative standard deviation of repeatability for LC–MS of oxidized PLTX standards was < 10% and < 8% for amino aldehyde and amide aldehyde, respectively, at 1 or 2 ng/ml, making this method suitable for monitoring trace levels of PLTX-like compounds.
For detection and quantification of gambierones, each Coolia cell pellet was extracted twice with 90% aqueous methanol, at a ratio of 1 mL per 2 × 105 cells, and subsequently lysed via ultrasonication (10 min at 59 kHz). Cellular debris was removed by centrifugations (3200g; 5 min; 4 °C) and the supernatant transferred to another vial. The resulting supernatants were pooled to give a final extract concentration equivalent to 1 × 105 cells/mL. The combined extracts were stored at − 20 °C for 24–48 h to precipitate insoluble matrix co-extractives, which were removed using centrifugation (3200g; 5 min; 4 °C) prior to analysis. An aliquot of the clarified extract was transferred into a 2 mL glass autosampler vial and analysed using a modification of the LC–MS/MS method described in Murray et al.99. The compounds are identified based on retention time (2.54 and 2.58 min for gambierone and 44-MG respectively) and fragment ion ratios compared to purified reference material, on a Waters Xevo TQ-S triple quadrupole mass spectrometer coupled to a Waters Acquity UPLC i-Class with a flowthrough needle sample manager. Data acquisition and processing was performed using MassLynx and TargetLynx software (Waters), respectively. Quantitation was achieved using a five-point, for gambierone and 44-MG (1–1000 ng/mL), linear regression calibration prepared in 90% aqueous methanol. The limit of quantification (LOQ) was determined as 0.05 pg/cell in an extract generated from a cell pellet of 1 × 106 cells.
Data availability
The authors declare that all data is available on request to the corresponding author.
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Acknowledgements
We thank Paraima Arapai Torea Allan for assisting with sampling, field work, and accommodation, and Dr Gurjeet S. Kohli for assisting with sampling. We thank the Australian government’s DFAT ALAF program for assistance, and the Hanse Wissenschaftskolleg, Germany, for supporting S.A.M., and the New Zealand co-authors were supported by the New Zealand Ministry of Business, Innovation and Employment funding (CAWX1801—Seafood Safety Research Platform).
Funding
The funding was provided by Australian Research Council, Fisheries Research and Development Corporation, Senckenberg Biodiversität und Klima Forschungszentrum, New Zealand Ministry of Business, Innovation and Employment, CAWX1801—Seafood Safety Research Platform, Department of Foreign Affairs and Trade, Australian Government, Hanse Wissenschaftskolleg, Germany.
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A.V., M.H., K.S., J.S.M. wrote the main manuscript text, generated figures, analyzed data, edited and finalized the manuscript. L.L.R., S.A.M., J.M.H., T.R. edited and reviewed the manuscript. All authors reviewed the manuscript.
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Verma, A., Hoppenrath, M., Smith, K.F. et al. Ostreopsis Schmidt and Coolia Meunier (Dinophyceae, Gonyaulacales) from Cook Islands and Niue (South Pacific Ocean), including description of Ostreopsis tairoto sp. nov.. Sci Rep 13, 3110 (2023). https://doi.org/10.1038/s41598-023-29969-z
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DOI: https://doi.org/10.1038/s41598-023-29969-z
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