Abstract
Understanding the intracellular behaviors of nanomedicines and morphology variation of subcellular architecture impacted by nanomaterial–biology (nano–bio) interactions could help guide the safe-by-design, manufacturing and evaluation of nanomedicines for clinical translation. The in situ and label-free analysis of nano–bio interactions in intact single cells at nanoscale remains challenging. We developed an approach based on X-ray microscopy to directly visualize the 2D or 3D intracellular distribution without labeling at nanometer resolution and analyze the chemical transformation of nanomedicines in situ. Here, we describe an optimized workflow for cell sample preparation, beamline selection, data acquisition and analysis. With several model bionanomaterials as examples, we analyze the localization of nanomedicines in various primary blood cells, macrophages, dendritic cells, monocytes and cancer cells, as well as the morphology of some organelles with soft and hard X-rays. Our protocol has been successfully implemented at three beamline facilities: 4W1A of Beijing Synchrotron Radiation Facility, BL08U1A of Shanghai Synchrotron Radiation Facility and BL07W of the National Synchrotron Radiation Laboratory. This protocol can be completed in ~2–5 d, depending on the cell types, their incubation times with nanomaterials and the selected X-ray beamline. The protocol enables the in situ analysis of the varieties of metal-containing nanomaterials, visualization of intracellular endocytosis, distribution and excretion and corresponding subcellular morphological variation influenced by nanomedicines in cell lines or primary cells by using this universal and robust platform. The results facilitate the understanding of the true principle and mechanism underlying the nano–bio interaction.
Key points
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An optimized workflow that includes cell sample preparation, hard and soft X-ray beamline selection, data acquisition and analysis for the localization of nanomedicines and the morphology of organelles in primary blood cells, macrophages, dendritic cells, monocytes and cancer cells.
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The protocol has been implemented at the 4W1A of Beijing Synchrotron Radiation Facility, BL08U1A of Shanghai Synchrotron Radiation Facility and BL07W of the Chinese National Synchrotron Radiation Laboratory.
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Acknowledgements
This work has received financial support from the National Key R&D Program of China (2021YFA1200900, 2022YFA1603701); the National Natural Science Foundation of China (22027810, U2032107); the Strategic Priority Research Program of Chinese Academy of Sciences (XDB36000000); CAMS Innovation Fund for Medical Sciences (CIFMS 2019-I2M-5-018), the National Postdoctoral Program for Innovative Talents (BX2021088) and Project funded by China Postdoctoral Science Foundation (2021M700977). The institutionalized scientific research platform relies on Beijing Synchrotron Radiation Facility of Chinese Academy of Sciences.
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C.C. conceived the idea, provided guidelines, and reviewed and edited the paper. C.C., M.C. and Y.W. contributed to the protocol development and designed the figures. M.C. conceptualized, wrote and reviewed the paper. Y.W. contributed to editing, structuring and reviewing the paper. L.W., K.Z. and Yo.G. contributed to editing the paper. Y.W. and Yu.G. analyzed the nano-CT data.
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Key references using this protocol
Cao M. et al. Nat. Nanotechnol. 16, 708 (2021): https://doi.org/10.1038/s41565-021-00856-w
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Cao, M., Wang, Y., Wang, L. et al. In situ label-free X-ray imaging for visualizing the localization of nanomedicines and subcellular architecture in intact single cells. Nat Protoc 19, 30–59 (2024). https://doi.org/10.1038/s41596-023-00902-y
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DOI: https://doi.org/10.1038/s41596-023-00902-y
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