Abstract
Genetic alterations in COL4A2 are less common than those of COL4A1 and their fetal phenotype has not been described to date. We describe a three-generation family with an intragenic deletion in COL4A2 associated with a prenatal diagnosis of recurrent fetal intracerebral hemorrhage (ICH), and a myriad of cerebrovascular manifestations. Exome sequencing, co-segregation analysis, and imaging studies were conducted on eight family members including two fetuses with antenatal ICH. Histopathological evaluation was performed on the terminated fetuses. An intragenic heterozygous pathogenic in-frame deletion; COL4A2, c.4151_4168del, (p.Thr1384_Gly1389del) was identified in both fetuses, their father with hemiplegic cerebral palsy (CP), as well as other family members. Postmortem histopathological examination identified microscopic foci of heterotopias and polymicrogyria. The variant segregated in affected individuals demonstrating varying degrees of penetrance and a wide phenotypic spectrum including periventricular venous hemorrhagic infarction causing hemiplegic CP, polymicrogyria, leukoencephalopathy, and lacunar stroke. We present radiographic, pathological, and genetic evidence of prenatal ICH and show, for what we believe to be the first time, a human pathological proof of polymicrogyria and heterotopias in association with a COL4A2 disease-causing variant, while illustrating the variable phenotype and partial penetrance of this disease. We highlight the importance of genetic analysis in fetal ICH and hemiplegic CP.
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Introduction
Perinatal intracerebral hemorrhage (ICH) may be diagnosed antenatally or postnatally, resulting in various brain lesions depending upon the mechanism, vascular anatomy, and timing of the injury [1,2,3,4]. Fetal intraventricular hemorrhage (IVH) usually originates in the germinal matrix and may extend to the ventricles by a mechanism similar to that occurring in premature babies [5,6,7]. When they are extensive, germinal matrix hemorrhages (GMH) can lead to impaired venous drainage in the periventricular white matter (PVWM), causing periventricular venous hemorrhagic infarction (PVHI) that can subsequently evolve into a porencephalic cyst [5, 8, 9]. Diagnosis can be made by ultrasonography during pregnancy or by the appearance of early limb preference during infancy [9,10,11,12,13,14]. Prenatal GMH may result from acquired causes, such as fetal alloimmune thrombocytopenia or other coagulopathies, thrombophilia, antenatal trauma, or severe maternal disease, although the etiology is often not established [15,16,17]. Disease-causing variants in the collagen type IV alpha 1 (COL4A1) and the collagen type IV alpha 2 (COL4A2) genes are known genetic causes of antenatal/perinatal-onset [11, 12, 18,19,20,21,22,23,24].
COL4A1 and COL4A2 are abundant components of nearly all basement membranes (BMs), and therefore, as suggested by the evidence to date, both COL4A1 and COL4A2 are associated with systemic vascular BM disease resulting in a broad phenotypic spectrum, including neurological, renal, ophthalmological, muscular, and cardiac manifestations, starting in fetal life and extending until adulthood [10,11,12,13,14, 20, 23, 24]. The neurological phenotype associated with COL4A1 is expanding and includes small-vessel disease (SVD) of varying severity [13, 14, 21, 23, 25,26,27]. Fetal ICH with subsequent porencephalic cavitation has been described in association with COL4A1 and may result in destructive changes resembling hydranencephaly at the severe end [1, 11, 19, 28, 29]. Disease-causing variants in COL4A2 are rarer, and a frequency bias for COL4A1 over COL4A2 disease-causing variants has been recognized [30]. Although both sporadic and familial porencephaly are associated with COL4A2 and are considered to be caused by an antenatal/perinatal insult, they are usually discovered in infancy or childhood, commonly following an uneventful pregnancy and neonatal period [25, 28, 31,32,33,34]. To the best of our knowledge, the COL4A2-associated phenotype has not been documented in human fetal life. In the present study, we report six members from a three-generation family with a novel COL4A2 deletion that was identified following the diagnosis of fetal ICH in two consecutive pregnancies.
Methods
We performed exome sequencing (ES) in fetal DNA of two consecutive pregnancies that were terminated because of extensive brain damage due to fetal IVH, their healthy mother, and their father who has hemiplegic CP. Following genetic diagnosis, additional family members were genetically and clinically evaluated.
Participants
The clinical phenotype of the proband fetuses and all the affected family members was obtained from clinical records and by clinical and neurological examinations when possible.
Genetic analysis
Genomic DNA was extracted from peripheral blood according to standard protocols. Fetal DNA was extracted from fetal material taken following the termination of pregnancy (TOP). ES was performed for both fetuses and their parents by Fulgent Diagnostics SEQ on Illumina HiSeq4000 using the Roche Nimblegen Protocol at a sequencing depth of 60X. Analysis of the raw data was performed with the Variantyx diagnostic platform (Variantyx Genomic Intelligence®) [35]. Nonsense, nonsynonymous, canonical splice sites, and indels in coding regions with a minor allelic frequency of <0.01 in public databases (gnomAD, ExAc, and 1000 genomes) were analyzed and interpreted according to the American College of Medical Genetics and Genomics (ACMG) guidelines [36].
Histopathological analysis
TOP was approved by the institutional committee according to the local law. A postmortem evaluation was performed on both fetuses at 26 weeks’ gestation after receiving parental consent. The autopsy procedures followed routine protocol [37]. Gross examination of the brain was performed by coronal sectioning of the cerebral hemispheres and mid-sagittal sectioning of the midbrain and cerebellum. Multiple tissue samples were submitted for histological processing. Four-μm-thick histological sections were prepared and stained with hematoxylin and eosin and examined along with the corresponding gross photographs. Immunohistochemical stains for GFAP, CD68, Collagen IV, CD 31, and CD34, PAS, and Prussian blue (Iron) were carried out. The immunohistochemical stains were carried out with a Ventana Benchmark XT immunostainer.
Results
Proband cases
Clinical findings
The clinical characteristics and pedigree of the study participants are summarized in Table 1 and Fig. 1, respectively. Case III-4 was a female fetus of a 32-year-old healthy mother. The pregnancy was spontaneous and uneventful, with normal prenatal sonographic scans until 25 weeks’ gestation, when a routine US examination revealed PVWM echogenicity and bilateral Grade II IVH. There was no history of maternal trauma, infection, or drug abuse. A neurosonographic examination at 26 weeks’ gestation showed ventriculomegaly with diffuse involvement of the brain parenchyma consistent with Grade III IVH with PVHI. Maternal serum did not demonstrate any platelet alloantibodies, and platelet genotyping did not reveal any human platelet antigen incompatibility, thus excluding neonatal alloimmune thrombocytopenia. TOP was performed at 26 weeks’ gestation.
Case III-5 was a female fetus conceived 15 months later. The prenatal follow-up was normal until 26 weeks’ gestation when the mother complained of reduced fetal movements. A repeat transvaginal US examination showed severe bilateral ventriculomegaly with right IVH together with extensive PVWM and caudate nucleus echogenicity, suggestive of deep venous hemorrhagic infractions (Fig. 2ii). A TOP was performed.
Histopathological findings
Postmortem examinations of cases III-4 and III-5 were performed at 26 weeks’ gestation and revealed fetal weight adequate for gestational age with normal head circumference. The gross and histological appearance of the internal organs and tissues, including kidneys and muscle, were normal in both autopsies. There was a transverse reduction of fingers 1, 3, 4, and 5 of the left hand in fetus III-4 (Fig. 3J).
Gross and histological examinations of the brains of both fetuses revealed partially resorbed and digested hemorrhagic content within the lateral ventricles with ependymal destruction as well as extensive damage to the PVWM with areas of focal necrosis, microscopic calcifications, and mineralization of the WM. Numerous microglia and reactive changes in astrocytes in both fetuses were demonstrated by CD68 and GFAP immunostains, respectively. The immunostains for collagen IV in the hemorrhagic PVWM revealed marked irregular thickening of vascular BM (Fig. 3C–E).
Focal cortical dysplasia, focal WM neuroblastic heterotopia associated with marked cortical thinning in the left anterior temporal lobe and 2-microscopic foci of polymicrogyria (PMG) in the left frontal and opercular areas (Fig. 3F–I) were noted in case III-5.
Genetic analysis
Molecular analysis revealed a novel intragenic heterozygous in-frame deletion of 18 base pairs in exon 44 of the COL4A2 gene; c.4151_4168del, (p.Thr1384_Gly1389del), (ENSG0000134871.19 ENST00000360467.7, ENSE00001468433) in the two fetuses (cases III-4, III-5), inherited from the father (individual II-2). The deletion causes a loss of six amino acids, including two glycine residues within the conserved area of the triple helical collagenous part of the protein. This deletion has not been reported in the population database (gnomAD, https://gnomad.broadinstitute.org) and segregated with other affected family members with various degrees of penetrance (Fig. 1). Therefore, it was defined as likely pathogenic based on ACMG criteria [36]. The variant and phenotype presented in the study was submitted to ClinVar (accession SCV001477492, URL: https://www.ncbi.nlm.nih.gov/clinvar/variation/7105/).
Other family members
The parents of the 2 fetuses (II-2 and II-5, Fig. 1) are non-consanguineous Caucasians in their 30s. They have a 4-year-old healthy son. The mother (II-5) had an uneventful medical history apart from medically treated and well-controlled hypothyroidism. She had two prior spontaneous miscarriages at 6- and 8-weeks’ gestation and underwent an extensive workup for repeated miscarriages, including a thrombophilia workup, TORCH serology, and karyotyping, all of which were normal. The father (II-2), who had the same COL4A2 deletion, was born at term after an uneventful pregnancy as the second son to parents of Jewish-Moroccan ancestry. At 7 months of age, he was noted to have left-sided hemiparesis and later developed high myopia. Computed tomography revealed an enlarged right lateral ventricle (images not available). He was diagnosed with hemiplegic CP due to presumed perinatal injury, and no further workup was carried out. He had febrile seizures in early childhood, with no subsequent clinical seizures. He had learning difficulties and attended a special education school in early childhood with normal intellect in adult life. Following the diagnosis of the affected fetuses, he underwent brain magnetic resonance imaging (MRI) at 35 years of age, which revealed right-sided porencephaly, reduced volume of the right frontal WM, and an irregular, thickened cortex suggestive of focal opercular PMG (Fig. 4). An ophthalmological examination showed high myopia and tilted discs. His renal US, urinalysis, and creatine phosphokinase levels were normal.
A clinical review of the extended paternal family revealed at least four other affected individuals, including his 65-year-old father (individual I-1), who has a history of diabetes mellitus, hypertension, and aortic stenosis but is neurologically intact. His brain MRI shows a remote hemorrhagic infarct in the left lentiform, with adjacent porencephalic dilatation of the lateral ventricle (Fig. 4). Remote lacunar infarcts in the left frontal area, and the deep WM as well as mild PVWM T2-hyperintesities are also evident.
The other affected family member is a 9-year old female (III-6), the niece of individual II-2 (Fig. 1) who was born at 37 + 6 gestational age following a normal pregnancy, with normal Apgar scores, birth weight, and head circumference. At the age of 6 months, she was diagnosed with right-sided mild hemiparetic CP. An MRI of the brain at age 10 months revealed left-sided porencephaly with bilateral signal abnormalities in the deep PVWM in both frontal and parietal regions, with loss of PVWM volume sparing of subcortical WM. SWI showed low-signal intensity on the ventricular margins suggestive of presumed perinatal GMH (Fig. 4). A thrombophilia workup revealed a maternally inherited heterozygous prothrombin variant (G21210A). She attended regular schools, had normal verbal and cognitive development, and had no clinical seizures. Her neurological examination showed right-sided spastic hemiparesis (GMFCS-2). She had no other systemic involvement.
The mother of individual III-6 was 32-year-old healthy female (individual II-3) with normal perinatal history, development, and normal intellect. Her brain MRI showed a peri-atrial left T2-weighted hyperintense lesion as well as a right frontal peri-insular focal cortical thickening suggestive of PMG. A few punctuate hyperintense T2-lesions were also noted in the left frontal lobe, centrum semiovale, and the cerebellum. She had no other systemic involvement.
Discussion
Although reported for COL4A1 [11, 19], almost all evidence for an antenatal origin of ICH associated with COL4A2 has been demonstrated through postnatal imaging. In this report, we highlight the variable phenotypic spectrum of COL4A2-related disease throughout the life span in a three-generation pedigree. By providing antenatal human radiological and pathological evidence, we show, for what we believe is the first time, fetal origin of ICH, as well as isolated PMG and heterotopia due to a COL4A2 disease-causing variant. The detection of this COL4A2 variant in the two reported fetuses led to a diagnosis and an explanation for clinical features in other family members, highlighting a valuable role of genetic testing in fetal ICH.
In opposition to the reported understanding that COL4A2 variants are associated with milder phenotypes and later age at onset [30], we show that prenatal severe manifestations may occur as well. The wide phenotypic inter-familial variance, previously documented for both COL4A1 and COL4A2 [13, 34], suggests incomplete penetrance of the disease and the potential role of other modifying factors. The highly variable phenotypic spectrum of COL4A-related disease is a challenge in both diagnostic and genetic counseling perspectives. It emphasizes that the assessment of fetal ICH should include a multidisciplinary team approach involving gynecologists, pediatric neurologists, and geneticists. Importantly, asymptomatic carriers should also undergo MRI since they may harbor SVD or aneurysms even in early adulthood [13].
A review of the literature and the listed genetic variants to date do not report any other pathogenic in-frame deletions in the COL4A2 gene [30, 34]. Although the deletion reported here is an in-frame deletion, we show segregation of the variant throughout three generations and partial penetrance in extended family members. The possibility that another disease-causing variants arbitrarily segregating with affected family members without being detected in two WES analyses is ~3%. The deletion is at the distal end of the collagenous domain of the protein (position 1384-1389/1713 amino acids) in the triple helix domain. Numerous pathogenic missense variants located near the end of the triple helical part of COL4A2 have been reported, suggesting that this area is a “hot spot”. Although the deletion may cause an abnormal protein function by different pathogenic mechanism compared to the well-described G-Xaa-Yaa missense variants, a deletion may cause loss of COL4A2 chain synthesis from one allele, predicted to cause a loss of function of the heterotrimer. This, along with the segregation of the deletion with affected members, is highly supportive of its pathogenicity. Importantly, our results show that the location of the variant cannot be the sole factor for determining genotype–phenotype correlation in regard to the Cerebrovascular disease (CVD). Plausible explanations include genetic modifiers, mosaicism, or environmental influences. Notably, and contrary to what had previously been hypothesized about non-glycine variants being likely low-penetrance risk alleles for late-onset intracranial hemorrhage [33], we now show that COL4A2 deletions can cause a severe early-onset phenotype, similar to COL4A1. Of note, the prothrombin variant (G21210A) that had been identified in proband III-6 and individual II-3 was not found in any other family members. Given that thrombophilia is very uncommon in presumed perinatal stroke [38], and the phenotype was observed in family members that do not carry this variant, it is highly unlikely that this variant can serve to explain the neuroimaging findings identified in these two patients.
The modification of the BM structural properties due to variants in COL4A1/2 increases the fragility of the vessel wall when exposed to environmental factors. Although pathological changes in BM also occur in other tissues, the major site of vessel damage is the brain [39]. The hemorrhage observed in the fetal brain is thought to be caused by rupture of the weakened small vessels in the GM due to the altered BM. Brain MRIs for individuals II-2, II-3, and III-6 were performed later in life, challenging the exact timing of the insult. However, the PMG demonstrated in individuals II-2 and II-3, taken together with the lack of gliosis, clearly points to an early insult, probably before 24 weeks of gestation [1, 40]. Although malformations of cortical development were associated with COL4A1 and COL4A2 in both animal models and human [18, 20, 28, 41,42,43], isolated PMG not associated with schizencephaly, and heterotopias have never been associated with COL4A2. Although vascular injury may induce PMG [44, 45], the pathophysiology of migration anomalies in COL4A genes may not only be related to concrete vascular insult but can be explained by dysfunction of the glial-limiting membrane, disturbing the proper migration of neurons [31]. Of note, no other pathogenic variant associated with brain malformations was identified during the WES data annotation. Indeed, it is currently considered that hydranencephaly, schizencephaly, porencephaly, and PMG represent a continuum of brain injury, depending upon the timing and the severity of the insult [1, 40]. Thus, the family describe herein represents similar pathology occurring at different timelines of brain development.
The pathogenicity of COL4A1 and COL4A2 is not completely understood and can be related to both the reduction in extracellular-to-intracellular ratio and accumulation of mutant proteins, depending upon the specific variant. These may induce an intracellular cytotoxic effect and induce apoptosis [33, 34]. Currently, there is no targeted treatment for COL4A1/2-vasculopathy. Better understanding of the natural history as well as genotype-phenotype correlations and genetic-environmental interactions may eventually emerge, thus facilitating appropriate surveillance protocols and the development of targeted novel therapies. Performing an elective cesarean section is not sufficient to prevent brain trauma as antenatal hemorrhage may occur, even weeks before the anticipated delivery [25, 28]. Although optimal antenatal and perinatal management of COL4A-related disease has not been delineated and requires further investigation in humans, preventive measures might prevent additional injury and may also impact disease expression for late-onset disease. For adult-onset CVD, careful surveillance and management of modifiable environmental risk factors, including hypertension, diabetes, avoidance of risky physical activities, constipation and prolonged labor and even nutritional supplements (e.g., vitamin E, fish oil) which may increase the risk of bleeding, and the use of anticoagulants, should be discussed in counseling [26].
We suggest considering genetic testing for COL4A1 and COL4A2 in cases for which there is radiologic evidence of fetal/perinatal venous hemorrhagic infarctions with porencephaly, as well as when there is evidence of accompanying leukoencephalopathy, microhemorrhages or malformations of cortical development, particularly when associated with typical ocular or renal involvement. Since stroke is the most common cause of hemiparetic CP, patients with hemiparetic CP should undergo MRI with SWI sequence to detect remote bleeding, and genetic investigation should be considered in cases with the above-mentioned radiographic imaging patterns. In addition, testing for COL4A1/COL4A2 should be considered for patients with multiple lacunar infarcts or intracranial aneurysms.
Conclusions
Our study demonstrates, for what we believe to be the first time, a documentation of the antenatal occurrence of fetal autosomal dominant COL4A2-related ICH and provides histopathological human evidence of isolated PMG and heterotopia in association with COL4A2. This report extends and complements earlier studies on the COL4A2-associated phenotype. Our findings highlight the diverse clinical presentation of COL4A2 vasculopathy and emphasize the important role of genetic diagnosis in fetal ICH as well as in patients with hemiplegic CP, particularly those with a non-supporting perinatal history and characteristic MRI findings.
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Acknowledgements
We are grateful to the patients for consenting to participate in this study. Variantyx Genomic Intelligence® is thanked for their assistance in the interpretation of the genetic analysis. Esther Eshkol is thanked for editorial assistance.
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This study was funded by the Brain Center at Tel Aviv Sourasky Medical Center.
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All experiments were performed in accordance with relevant guidelines and regulations. The study protocols were reviewed and approved by the Institutional Review Board. Informed consent was obtained from all participants prior to genetic testing.
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Hausman-Kedem, M., Ben-Sira, L., Kidron, D. et al. Deletion in COL4A2 is associated with a three-generation variable phenotype: from fetal to adult manifestations. Eur J Hum Genet 29, 1654–1662 (2021). https://doi.org/10.1038/s41431-021-00880-3
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DOI: https://doi.org/10.1038/s41431-021-00880-3