Abstract
Mitochondrial dysfunction and mitophagy are often hallmarks of neurodegenerative diseases such as autosomal dominant optic atrophy (ADOA) caused by mutations in the key mitochondrial dynamics protein optic atrophy 1 (Opa1). However, the second messengers linking mitochondrial dysfunction to initiation of mitophagy remain poorly characterized. Here, we show in mammalian and nematode neurons that Opa1 mutations trigger Ca2+-dependent mitophagy. Deletion or expression of mutated Opa1 in mouse retinal ganglion cells and Caenorhabditis elegans motor neurons lead to mitochondrial dysfunction, increased cytosolic Ca2+ levels, and decreased axonal mitochondrial density. Chelation of Ca2+ restores mitochondrial density in neuronal processes, neuronal function, and viability. Mechanistically, sustained Ca2+ levels activate calcineurin and AMPK, placed in the same genetic pathway regulating axonal mitochondrial density. Our data reveal that mitophagy in ADOA depends on Ca2+-calcineurin-AMPK signaling cascade.
Similar content being viewed by others
Introduction
Neuronal health crucially depends on mitochondria, which supply most of the ATP required for their function and growth. Not surprisingly, neurodegeneration is often associated with mitochondrial dysfunction [1,2,3,4]. In the last decade, the basic tenets of mitophagy, the removal of mitochondria by autophagy, have been elucidated. The core components of the mitophagy machinery are linked to genetic forms of neurodegeneration: the Parkinsonās disease genes PTEN-induced kinase 1 (PINK1; PARK6) and the cytosolic E3 ubiquitin ligase Parkin (PARK2) are centrally placed in the mitophagy pathway [5,6,7]. In the most parsimonious model, mitochondrial dysfunction leads to membrane depolarization, impaired import of PINK1 that once imported in healthy cells is constitutively degraded by the inner mitochondrial membrane presenilin-associated rhomboid such as (PARL) protease, PINK1 accumulation on the outer mitochondrial membrane, and recruitment and stabilization of Parkin that ubiquitinates promiscuous substrates on the OMM to flag these damaged organelles for engulfment by the nascent autophagosomes [5,6,7].
While the PINK1āParkin pathway efficiently eliminates dysfunctional mitochondria in several cell types, neurons often show delayed Parkin-mediated mitophagy in response to mitochondrial depolarization [8,9,10]. Indeed, at a major difference from flies, in Parkin or PINK1 deficient mice mitochondrial morphology and neuronal health are largely unaffected [11]. These findings suggest that other mechanisms than the finely regulated Parkin-mediated mitophagy operate to maintain mitochondrial integrity in neurons and neuronal health upon mitochondrial dysfunction. Indeed, inhibition of autophagy paradoxically protects retinal ganglion cells (RGCs) from the consequences caused by expression of mutants of the key mitochondrial dynamics gene optic atrophy 1 (Opa1), mutated in the neurodegenerative disease autosomal dominant optic atrophy (ADOA), and corrects the visual defect caused by conditional RGC Opa1 ablation. Similarly, autophagy inhibition protects Caenorhabditis elegans GABAergic neurons where mitochondrial dysfunction is induced by inhibiting respiration genetically or pharmacologically. In both mice and nematodes, reduction of autophagy restores axonal distribution of mitochondria, largely impaired when mitochondrial function is perturbed [12]. Thus, mouse RGCs expressing mutated Opa1 and nematode GABAergic neurons with dysfunctional mitochondria represent a useful tool to elucidate the retrograde signals linking mitochondrial dysfunction to mitophagy in neurons.
Alterations in Ca2+ signaling are a known consequence of mitochondrial dysfunction [13,14,15]. In normal conditions, mitochondria take up cytosolic Ca2+ via the mitochondrial uniport (MCU) using the driving force of the mitochondrial electrochemical gradient [16]. Mitochondrial dysfunction not only reduces the required driving force for Ca2+ uptake but it also triggers opening of the mitochondrial permeability transition pore, leading to the release of the Ca2+ accumulated in the matrix, further amplifying depolarization and reducing the Ca2+ buffering capacity of mitochondria [17]. The mitochondrial ability to take up Ca2+ is essential in cells such as neurons that are highly dependent on Ca2+ homeostasis. In neurons, mitochondria traffic to sites of high energy demand, such as Nodes of Ranvier, growth cones, and presynaptic endings, where they buffer Ca2+ and produce ATP to sustain neuronal communication and circuits formation [1, 18,19,20]. Moreover, synaptic mitochondria regulate Ca2+ fluctuations promoting ion gradient and, thereby, neurotransmission and synaptic plasticity [20, 21]. Therefore, altered cytosolic Ca2+ levels impair neurotransmission, axon guidance, and spine formation, leading to neuronal loss and organismic defects including cognitive dysfunction [15, 22]. Furthermore, sustained Ca2+ rises activate the Ca2+-dependent phosphatase calcineurin A (CnA) that dephosphorylates the master mitochondrial fission executor dynamin-related protein 1 (Drp1) to drive mitochondrial fragmentation, a prerequisite for mitophagy [23,24,25]. Active CnA also stimulates autophagy via TFEB dephosphorylation and nuclear translocation [26]. CnA is expressed in mature RGCs and amacrine cells but not in the other cells of the retina [27] and its overexpression promotes RGCs apoptosis [28], whereas the CnA inhibitor FK506 reduces RGC death in a mouse model of glaucoma [29].
In Opa1 deficient neurons, autophagosomes and fragmented mitochondria characterized by diminished Ca2+ buffering capacity accumulate in cell bodies [30,31,32,33]. Mechanistically, the diminished Ca2+ buffering capacity might not only result from the mitochondrial dysfunction associated with Opa1 deficiency but also from the dissociation of MICU1 from MCU that occurs when Opa1 is depleted [34]. Whether and how these facets of impaired mitochondrial function and Ca2+ buffering capacity are linked to the aggregation of autophagosomes observed in ADOA mouse models and to the AMPK-dependent mitophagy observed in RGCs expressing mutated Opa1 is unclear [35, 36].
With these questions in mind, we set out to investigate the role of Ca2+ in the activation of mitophagy observed in neurons where mitochondria are dysfunctional. We provide evidence that localized Ca2+ elevation at the axonal hillock activates mitophagy through the coordinated function of AMPK and CnA in both nematode and mouse neurons. Chelation of Ca2+ and inhibition of CnA normalizes autophagy, ultimately protecting neurons from mitochondrial dysfunction.
Results
Increased intracellular Ca2+ in nematode neurons and mouse RGCs with dysfunctional mitochondria
Reduced axonal mitochondrial density is a common feature of several neurodegenerative conditions associated with mitochondrial dysfunction and mitophagy. We decided to investigate the signals linking mitochondrial damage to mitophagy and reduced axonal mitochondrial density in a model of ADOA obtained by expressing pathogenic Opa1 mutants in RGCs and characterized by AMPK-dependent mitophagy and reduced axonal mitochondrial number [12]. In these cells, we expressed pathogenic Opa1 mutants (K301A and R905stopāR905*) as well as wild-type and constitutively active Q297V Opa1 as a control for Opa1 overexpression [12]. We also wished to generate a C. elegans model of mitochondrial damage in neurons caused by Opa1 disruption. To this end, we turned to nematode mutants of EAT-3, the homolog of mammalian Opa1. Similar to what observed in RGCs, mitochondrial density and length were reduced in axons of GABAergic neurons of eat-3(ad426) nematodes that lack EAT-3, whereas mitochondrial pixel intensity remained unaltered (Fig. 1aād and Supplementary Fig.Ā 1a). We then measured whether expression of the pathogenic Opa1 mutants affected mitochondrial function. These mutants did not reduce matricial ATP levels measured using the ratiometric ATP probe mtATeam in soma and neurite mitochondria (Supplementary Fig.Ā 1b). However, fluorescence of the potentiometric dye tetramethylrhodamine methyl ester (TMRM) decayed in response to the ATP synthase inhibitor oligomycin [37], indicating that Opa1K301A and Opa1R905* mitochondria were latently dysfunctional (Supplementary Fig.Ā 1c, d).
Mitochondrial dysfunction is a common cause of impaired mitochondrial Ca2+ buffering that together with low AMP:ATP ratio and reactive oxygen species (ROS) accumulation can activate AMPK [38,39,40]. Indeed, by real-time imaging, we measured increased cytosolic Ca2+ levels in both mechanosensory neurons of eat-3(ad426) mutant nematodes expressing the genetically encoded Ca2+ indicator GCaMP6.0 and in RGCs expressing pathogenic, but not wt or Q297V Opa1 mutants and stained with the ratiometric Ca2+ indicator Fura-2 (Fig. 1eāi). We noticed that the intensity of Fura-2 fluorescence was not uniformly higher throughout the soma of ADOA RGCs, but mostly increased at the level of the axonal hillock, proximal to mitochondria that we labeled by expressing a mitochondrially targeted RFP (mtRFP) (Fig. 1g). The signal GCaMP6.0 was instead uniform in the soma (Fig. 1f) even if mitochondria accumulated in the axonal hillock (Supplementary Fig. 1a). Conversely, Ca2+ increased in the axonal hillock when mitochondrial density and respiration was impaired by the redox cycler paraquat (Supplementary Fig.Ā 2a, b). These results indicate that Opa1 mutation/depletion in the mouse and nematode neurons and pharmacologically induced mitochondrial dysfunction in C. elegans result in higher cytoplasmic Ca2+ levels.
Ca2+ modulates axonal mitochondria density in ADOA neurons
We next addressed the relative role of mitochondrial depolarization and increased cytoplasmic Ca2+ levels in the observed phenotype of reduced axonal mitochondria density. Loss of mitochondrial membrane potential indeed triggers retrograde axonal transport of mitochondria [41], potentially explaining our observation. Conversely, high Ca2+ levels cause the dissociation of the mitochondrial adapter Miro from the Trak1/Milton complex to arrest mitochondrial movement and entry into axons. At a closer look, the few neurite mitochondria expressing Opa1K301A and Opa1R905* depolarized to a lesser extent than in the soma in response to oligomycin (Supplementary Fig.Ā 1c, d). We wondered whether this was due to retrograde transport of dysfunctional organelles expressing pathogenic Opa1 mutants in the soma. We found that retrograde transport of mitochondria expressing pathogenic Opa1 mutants was not increased and instead these mitochondria were more stationary. Anterograde or retrograde velocity of the few motile Opa1K301A and Opa1R905* mitochondria was normal, suggesting that these mutants did not intrinsically alter mitochondrial transport speed (Supplementary Fig.Ā 1eāh). Therefore, retrograde transport contributes at best marginally to the lower mitochondrial density in ADOA RGCs.
Next, we addressed whether elevated intracellular Ca2+ was responsible for the lower mitochondrial density in ADOA axons. To this end, we chelated intracellular Ca2+ and assessed the number of mitochondria in GABAergic motor neurons of nematodes expressing OPA1K301A and in RGCs expressing the same mutant isoform. Supplementation of the chelating agents ethylene glycol tetraacetic acid (EGTA) to nematodes and 1,2-bis(2-aminophenoxy)ethane-N,N,Nā²,Nā²-tetraacetic acid (BAPTA) to RGCs restored axonal mitochondria density in OPA1K301A-expressing neurons (Fig.Ā 2aāg). However, mitochondrial length and pixel intensity were not affected upon Ca2+ chelation (Fig. Ā 2c, d). We repeated this experiment in nematodes treated with paraquat that also increases cytosolic Ca2+ levels and reduces mitochondrial content in C. elegans GABAergic neurons (Supplementary Fig.Ā 2aāc). EGTA restored axonal mitochondria density in paraquat-treated nematodes (Supplementary Fig.Ā 2d, e). Moreover, paraquat-induced mitophagy was abolished upon calcium chelation underlining the essential role of cytosolic Ca2+ elevation in the maintenance of mitochondrial homeostasis (Supplementary Fig.Ā 2f, g). Altogether, these results indicate that the altered mitochondrial distribution observed in mouse and nematode models of neuronal mitochondrial dysfunction depends on intracellular Ca2+ elevation.
CnA and AMPK inhibition restores axonal mitochondria density in ADOA neurons
In addition to its known role as an inhibitor of axonal mitochondrial transport, sustained Ca2+ levels could also regulate axonal mitochondrial content by activating mitophagy, via CnA-dependent stimulation of mitochondrial fission and AMPK activation. To verify if Ca2+-dependent mitophagy was responsible for the observed reduction in axonal mitochondrial content, we analyzed the effect of Ca2+ chelation on autophagy and on mitochondrial distribution. Consistent with our previous study, mitochondria and autophagosomes aggregated close to the axonal hillock in RGCs expressing pathogenic Opa1 mutants (Fig.Ā 2cāf) [12]. Chelation of cytosolic Ca2+ restored autophagosomes and mitochondria distribution in the soma of RGCs (Fig.Ā 2cāf), to an extent that was similar to that we observed upon autophagy inhibition [12]. Notably, Ca2+ chelation did not influence distribution of mitochondria and/or autophagosomes in Opa1 and Opa1Q297V-expressing RGCs, highlighting that treatment with the Ca2+ chelating agents does not damage healthy RGCs. These results place Ca2+ as an upstream second messenger in the induction of mitophagy in ADOA RGCs.
We next investigated the role of the Ca2+-dependent phosphatase CnA in mitochondrial distribution and mitophagy in ADOA RGCs by expressing a constitutively active (CnACA) and a dominant negative (CnADN) mutant of CnA [12]. Interestingly, inhibition of CnA restored the distribution of mitochondria in the soma and the mitochondrial density in axons of ADOA RGCs (Fig.Ā 3aād). While CnADN did not influence mitochondrial or autophagosomal distribution in Opa1 and Opa1Q297V-expressing RGCs, CnACA expression was sufficient to trigger the accumulation of mitochondria and autophagosomes at the axonal hillock and depletion of axonal mitochondria (Fig.Ā 3aād). Furthermore, colocalization of autophagosomes and mitochondria in RGCs appeared to correlate with CnA activity, as it decreased upon CnADN and increased upon CnACA expression (Fig.Ā 3a, e). Notably, CnADN did not affect autophagic flux in RGCs expressing pathogenic Opa1 mutants, indicating that the observed effects of CnA on mitochondrial density were not a consequence of changes in basal autophagy levels (Supplementary Fig.Ā 3a, b). Because CnA can dephosphorylate and deactivate AMPK, we next addressed whether CnA and AMPK acted in the same genetic pathway to regulate mitochondrial content and autophagosomes formation in ADOA RGCs. Simultaneous genetic inhibition of both CnA and AMPK in Opa1K301A-expressing RGCs did not result in any additive effect on mitophagy (Fig.Ā 4a, b), density of axonal mitochondria (Fig.Ā 4a, c), and distribution of autophagosomes and mitochondria (Fig.Ā 4a, d, e). Therefore, we conclude that CnA and AMPK are in the same pathway controlling axonal hillock accumulation of autophagosomes and mitochondria in ADOA RGCs.
Neuronal cell death caused by mitochondrial dysfunction is inhibited by Ca2+ chelation and CnA blockage
We next addressed whether the Ca2+/CnA pathway identified participated in neuronal death caused by mitochondrial dysfunction. We first confirmed that expression of pathogenic Opa1 mutants triggers cell death also in nematodes (Fig.Ā 5a, Supplementary Fig.Ā 4), as it does in RGCs (Fig.Ā 5c, d and [12]). To investigate the contribution of elevated intracellular Ca2+ in Opa1K301A-mediated cell death, we examined the survival of C. elegans GABAergic motor neurons upon Ca2+ chelation. EGTA protected against OpaK301A-driven neuronal death (Fig.Ā 5a). The GABAergic neuronal circuit in C. elegans consists of 26 neurons, which regulate locomotion, foraging, and defecation behavior [42, 43]. To extend our analysis, we monitored the defecation cycle of Opa1K301A-expressing nematodes and evaluated the neuronal function of GABAergic neurons in response to Ca2+ chelation. Supplementation with EGTA restored the defecation cycle of Opa1K301A-expressing animals (Fig.Ā 5b), suggesting that Ca2+ chelation not only protects neurons from death but also spares their function. Defecation is mainly regulated by AVL and DVB GABAergic motor neurons, which are localized in the head and tail region respectively [43]. These two neuronal cells are more susceptible to the deleterious effect of Opa1K301A compared to other GABAergic neurons (Supplementary Fig.Ā 4a). These results can be explained either by the mosaicism expression of Opa1K301A in GABAergic neurons or by the specific anatomical features of the respective neurons, such as axon morphology, cell body placement, and synaptic connectivity. To examine the synaptic morphology of GABAergic motor neurons, we used the synaptic vesicle marker SNB-1/synaptobrevin fused with GFP. Opa1K301A-expressing nematodes display fewer SNB-1::GFP puncta and larger synaptic regions in GABAergic motor neurons (Fig.Ā 5eāg), a finding consistent with the observed reduction in synapses in mammalian cortical neurons where Opa1 was ablated [30] and in RGCs and hippocampal neurons of an ADOA mouse model [44, 45].
Several mitochondrial mutations have been associated with excess ROS accumulation leading to oxidative stress and neurodegeneration [2, 46,47,48,49]. To investigate the contribution of ROS in our model, we treated OPA1K301A-expressing nematodes with the antioxidant N-acetylcysteine (NAC). Interestingly, NAC protects against neurodegeneration of GABAergic motor neurons indicating that the expression of OPA1K301A results in increased ROS generation and neuronal loss (Supplementary Fig.Ā 4b). Simultaneous supplementation of NAC and EGTA did not display any additive neuroprotection, highlighting that altered ROS and calcium levels act in parallel to mediate neuronal dysfunction and loss in OPA1K301A-expressing nematodes (Supplementary Fig.Ā 4b). Comforted by the remarkable conservation of the pathway, we examined the impact of CnA in Opa1K301A-mediated apoptosis in RGCs and found that genetic inhibition of CnA spared RGCs from death (Fig.Ā 5c, d), similarly upon autophagy inhibition [12] (Supplementary Fig.Ā 4c). Our findings in their totality underline Ca2+ signaling as a central denominator of neuronal loss in ADOA pathogenesis.
Discussion
The precise signals linking mitochondrial dysfunction and dysmorphology to mitophagy are unclear, especially in neurons where mitophagy is a recognized mechanism of neurodegeneration. Here, we demonstrate that in two types of neurons, RGCs and GABAergic motor neurons, from two different model organisms, Mus musculus and C. elegans, mutation or deletion of the key mitochondrial protein Opa1 causes uncontrolled mitophagy by recruiting a CnAāAMPK pathway activated by elevated intracellular Ca2+ levels (Fig.Ā 6).
Impaired mitochondrial function and mitophagy are common features of several neurodegenerative diseases [2, 50]. Although mitophagy is usually associated with neuroprotection, also uncontrolled mitochondrial degradation could reduce mitochondrial density, overwhelming the reserve capacity of the remaining organelles and ultimately leading to bioenergetic crisis and neuronal loss [51, 52]. In fact, excessive mitophagy is pathogenetic in ADOA, where AMPK activation and ULK1 recruitment at axonal hillocks leads to localized autophagosome accumulation and mitophagy in RGCs expressing mutated Opa1 [12]. This mechanism appears genetically conserved in C. elegans GABAergic motor neurons. Because the connection between Opa1 inhibition and activation of mitophagy was conserved across species and neuronal types, we deemed this model suitable to investigate the signals linking mitochondrial dysfunction to the activation of AMPK-dependent mitophagy and diminished mitochondrial density in RGCs axons. Local Ca2+ signals are crucial in neuronal function and in controlling mitochondrial transport along axons. Our data indicate that Ca2+ also participates in mitochondrial degradation in C. elegans GABAergic motor neurons and mouse RGCs. The conservation of this mechanism in mammals and nematodes may suggest its conservation in other neuronal types and species. Our data demonstrate that the local increase of Ca2+ engages AMPK to drive mitophagy close to the axonal hillocks of neurons expressing pathogenic Opa1 mutants. This process ultimately determines the content of mitochondria in axons and the functioning and survival of neurons. Mechanistically, increased intracellular Ca2+ levels can activate AMPK via CAMKKbeta, directly linking this universal second messenger to mitophagy.
Our results indicate a role for CnA in the pathway leading to mitophagy in ADOA RGCs. An epistatic analysis places CnA and AMPK in the same pathway controlling axonal mitochondrial density but does not allow to understand whether CnA is placed up or downstream AMPK directly in the control of mitophagy. CnA can influence autophagy and mitophagy in multiple ways. First, CnA can dephosphorylate the crucial autophagy transcription factor TFEB, driving its nuclear relocalization and lysosome/autophagy genes transcription [26]. However, in RGCs genetic activation or blockage of CnA does not alter autophagic flux, suggesting that in this model CnA does not directly modulate TFEB and autophagy. Second, CnA can dephosphorylate and deactivate AMPK [53]. However, mitophagy in both RGCs and GABAergic neurons is curtailed by inhibition, not activation of CnA. These results suggest that CnA participates at a different checkpoint for mitophagy. Indeed, CnA also controls Drp1 dependent mitochondrial fission, a prerequisite for mitochondrial engulfment by autophagosomes [23, 25]. Altogether, we therefore interpret the beneficial effect of CnA inhibition on excess mitophagy as a consequence of Drp1 inhibition. In other systems, Drp1 inhibition can indeed counteract the deleterious effects of Opa1 deletion, lending further support to this hypothesis [54]. Drp1 is tightly linked with mitochondrial life cycle, since its activity could promote mitochondrial fission leading to the generation of new mitochondria and also facilitate the removal of defective organelles via mitophagy induction [55, 56]. Thus, Drp1 inhibition could also shift the balance of mitochondrial dynamics toward fusion, increasing the health of mitochondria and improving neuronal survival in pathological conditions, where excessive fission and mitophagy occur. Our results also suggest that drugs such as the CnA inhibitor FK506 might interfere with the natural history of ADOA, in addition to, or instead of gene therapy [57].
Our results add autophagy as a mechanism controlling mitochondrial subcellular distribution in polarized cells such as mouse RGCs and C. elegans neurons. Whether our findings can be extended to other cell types, organelles and disease models remain to be explored. However, it shall be noted that clustering and abnormal distribution of mitochondria has been reported in models of amyotrophic lateral sclerosis, Alzheimerās, Parkinsonās, and Huntingtonās disease [3, 19, 20, 58,59,60]. Our findings provide insights into the molecular mechanism of ADOA pathogenesis and can stimulate a deeper understanding of the contribution of mitophagy to neuronal pathophysiology and survival.
Materials and methods
Strains and genetics
We followed standard procedures for C. elegans strain maintenance [1]. Nematode rearing temperature was kept at 20āĀ°C. The following strains were used in this study: N2: wild-type Bristol isolate and DA631: eat-3(ad426)II; him-8(e1489)IV. To monitor mitochondrial number and distribution in neurons, we used EG6531: N2;oxIs608[punc-47mCherry];oxEx1182[punc-47TOM-20::GFP] [2], IR4554: eat-3(ad426)II; him-8(e1489)IV;oxIs608[punc-47mCherry];oxEx1182[punc-47TOM-20::GFP], and IR2097: N2;oxIs608[punc-47mCherry];oxEx1182[punc-47TOM-20::GFP];Ex0023[punc-47OPA1K301A] [12]. To examine neuronal cytoplasmic calcium levels in basal and oxidative stress conditions, we used IR1139: N2;Ex002[pmec-17GCaMP2.0] and AQ3236: IjSi2[pmec-7GCaMP6m::SL2::tagRFP; unc-119(+)]II; unc-119(ed3)III. To investigate defecation motor program, we used IR2093: N2;Ex0023[punc-47OPA1K301A] transgenic animals [12].
Plasmids and molecular biology
peYFP-hLC3 (YFP-LC3), mito-dsRED (mtRFP), pDCR-HA-ĪCnA (CA), pDCR-HA-ĪCnAH151Q (DN), pDCR-CnB, pCMV-AMPK (AMPK), pCMV-AMPKT172A (DN), pMSCV, pMSCV-Opa1, pMSCV-Opa1K301A pMSCV-Opa1Q297, and pMSCV-Opa1R905* were previously described [12].
RGC purification and culture
All mice procedures were performed according to approved protocols (protocol 32/2011 CEASA and 318/2015 Ministry of Health to LS). RGCs were purified from 8 to 10 C57Bl/6J aged P0āP2 using the immuno-panning magnetic protocol as previously described [61]. Overall, 1āĆā104 cells were transfected with the indicated plasmids using Neon Transfection System (Invitrogen) and seeded onto 24-mm round glass coverslips precoated with poly-L-ornithine 0.2āmg/ml (Sigma) and laminin 0.5āmg/ml (Roche). Cells were cultured as described at 37āĀ°C in a 5% CO2 atmosphere [61]. All experiments were performed 24āh after seeding. Autophagy was inhibited with 200ānM bafilomycin A (Sigma) for 30āmin or with 10āmM 3-Methyladenine (Sigma) for 24āh. Ca2+ was chelated with 40āĀµM BAPTA-AM (Sigma) for 30āmin.
Assessment of cytoplasmic Ca2+ levels
For intracellular Ca2+ assessment in nematodes, transgenic animals expressing the Ca2+reporter GCAMP2.0 or GCaMP6.0 fused with RFP in six touch receptor neurons were examined under a Zeiss AxioImager Z2 epifluorescence microscope. Four-day-old adult hermaphrodites were exposed to paraquat at a final concentration of 10āmM. Animals were imaged after 2 days at 20āĀ°C. Worms were immobilized with levamisole before mounting on 2% agarose pads for microscopic examination with a Zeiss AxioImager Z2 epifluorescence microscope. Images were acquired under the same exposure. Average pixel intensity values were calculated by sampling images of different animals. We calculated the mean pixel intensity of GCAMP2.0 or both GCaMP6.0 and RFP for each neuron in these images using the ImageJ software (http://rsb.info.nih.gov/ij/). GCaMP6.0 mean values were normalized to RFP mean values and then compared using unpaired t-tests. For each experiment, at least 35 animals were examined for each condition. Each assay was repeated at least three times. We used the Prism software package (GraphPad Software) for statistical analyses.
For Ca2+ imaging in RGCs, cells were loaded with 1āĀµM Fura2-AM (Invitrogen) dissolved in culture media for 20āmin at 37āĀ°C. Cells were washed in Ringerās solution (Sigma) and then placed on the stage of an Olympus IMT-2 inverted microscope (Melville, NY) equipped with a CellR imaging system. Images of the 340 and 380ānm fluorescence emission from mtRPF-expressing RGCs were acquired upon excitation at 510ānm and then processed using the Multi Measure plugin of ImageJ following background subtraction and expressed as Fura2-AM 340/380 ratio.
Mitochondrial imaging
Four-day-old adult hermaphrodites coexpressing mitochondria-targeted GFP together with cytoplasmic mCherry in GABAergic motor neurons were used in our study. Animals were immobilized with levamisole before mounting on 2% agarose pads for microscopic examination with Zeiss AxioObserver Z1 confocal microscope. Imaging parameters such as microscope and camera settings (lens and magnifier used, filters exposure time, resolution, laser intensity, gain, etc.) were kept the same during the imaging process. The quantification of mitochondrial number was performed using Zeiss ZEN 2012 software to automatically threshold the images and then determine the outlines of GFP-targeted mitochondria in axons of GABAergic motor neurons. Mitochondrial number was calculated by counting the average number of puncta per 100āĪ¼m of axonal length.
For confocal imaging in RGCs, images were acquired using a laser scanning microscope (TCS SP5, Leica) equipped with the LasAF software (Leica). YFP and dsRED were excited using the 488ānm or the 543ānm line of the HeNe and Argon with a 63Ć, 1.4NA objective. Twenty confocal images were acquired along the z-axis, deconvolved, and 3D reconstructed using ImageJ. Autophagosomes and mitochondria colocalization was quantified using Mandersā coefficient [45]. The length of axons was manually traced and quantified using the Multi Measure plugin of ImageJ. The distribution of mitochondria and autophagosomes in the soma was quantified using the Skewness coefficient of ImageJ.
For mitochondrial transport imaging, 1āĆā104 cells seeded onto 24-mm round glass coverslips were transfected with mtRFP and with the indicated plasmids. After 24āh, cells were placed on a thermostated chamber at 37āĀ°C and maintained on the stage of an Olympus inverted microscope equipped with a CellR imaging system. Sequential images of the 584ānm fluorescence emission were acquired every 1ās with a 60Ć, 1.4NA objective (Olympus) using the CellR software and then processed using the Straighten plugin of ImageJ. Mitochondrial velocity was measured as described [62].
For evaluation of membrane potential, 1āĆā104 RGCs were plated on 24āmm round coverslips and were cotransfected with pEGFP and the indicated plasmids. After 24āh, RGCs were loaded with 0.5ānM TMRM (Sigma) dissolved in Hanksā balanced salt solution (HBSS, Invitrogen) supplemented with 10āmM HEPES pH 7.4 (Invitrogen) in the presence of 2āmg/ml cyclosporine H (a P-glycoprotein inhibitor, Sigma) for 30āmin at 37āĀ°C. Cells were then placed on the stage of an Olympus IMT-2 inverted microscope (Melville, NY) equipped with a CellR imaging system. Cells were excited using a 525/20 BP excitation filter, and emitted light was acquired using a 570/LP filter. Imaging and analysis of TMRM fluorescence over mitochondrial regions of interest was performed as described [63].
Mitochondrial ATP content was determined by FRET image analysis of neurons seeded onto 24-mm round glass coverslips after electroporation with the indicated plasmid and ATeam as described [64]. Basal values are average of 3āmin resting fluorescence ratios recorded after cells were allowed to equilibrate for 5āmin in the indicated HBSS buffers.
Analysis of apoptosis
RGCs were transfected using mtRFP and Opa1 plasmids. After 24āh, cells were fixed for 10āmin at room temperature with 3.7% (w/v) formaldehyde and permeabilized for 10āmin with Triton-X-100 0.1%. Apoptosis was evaluated by TUNEL using the In-Situ Cell Death Detection Kit (Roche) following manufacturerās instructions. Images were acquired as single planes using a Nikon Eclipse TE300 inverted microscope equipped with a spinning-disk Perkin-Elmer Ultraview LCI confocal system. dsRED and TUNEL-FITC were excited using the 568ānm or the 440ānm line of the HeNe laser (Perkin-Elmer) using a 63Ć, 1.4NA objective.
Statistical analysis
We used the Prism 8.3 software package (GraphPad Software) for statistical analyses. In graphs, averageāĀ±āSD is plotted, and P values are indicated in figure legends. T-test and one-way or two-way ANOVA tests were used to determine statistical significance. The indicated corrections were used if assumptions of normality and homoscedasticity were not respected. Pā<ā0.05 was considered statistically significant.
References
Devine MJ, Kittler JT. Mitochondria at the neuronal presynapse in health and disease. Nat Rev Neurosci. 2018;19:63ā80.
Hou Y, Dan X, Babbar M, Wei Y, Hasselbalch SG, Croteau DL, et al. Ageing as a risk factor for neurodegenerative disease. Nat Rev Neurol. 2019;15:565ā81.
Misgeld T, Schwarz TL. Mitostasis in neurons: maintaining mitochondria in an extended cellular architecture. Neuron. 2017;96:651ā66.
Schon EA, Przedborski S. Mitochondria: the next (neurode)generation. Neuron. 2011;70:1033ā53.
Ng MYW, Wai T, Simonsen A. Quality control of the mitochondrion. Dev Cell. 2021;56:881ā905.
Palikaras K, Lionaki E, Tavernarakis N. Mechanisms of mitophagy in cellular homeostasis, physiology and pathology. Nat Cell Biol. 2018;20:1013ā22.
Pickles S, VigiĆ© P, Youle RJ. Mitophagy and quality control mechanisms in mitochondrial maintenance. Curr Biol. 2018;28:R170ār185.
Narendra DP, Jin SM, Tanaka A, Suen DF, Gautier CA, Shen J, et al. PINK1 is selectively stabilized on impaired mitochondria to activate Parkin. PLoS Biol. 2010;8:e1000298.
Evans CS, Holzbaur EL. Degradation of engulfed mitochondria is rate-limiting in optineurin-mediated mitophagy in neurons. Elife. 2020;9:e50260.
Cai Q, Zakaria HM, Simone A, Sheng ZH. Spatial parkin translocation and degradation of damaged mitochondria via mitophagy in live cortical neurons. Curr Biol. 2012;22:545ā52.
Whitworth AJ, Pallanck LJ. PINK1/Parkin mitophagy and neurodegenerationāwhat do we really know in vivo? Curr Opin Genet Dev. 2017;44:47ā53.
Zaninello M, Palikaras K, Naon D, Iwata K, Herkenne S, Quintana-Cabrera R, et al. Inhibition of autophagy curtails visual loss in a model of autosomal dominant optic atrophy. Nat Commun. 2020;11:4029.
Augustine GJ, Santamaria F, Tanaka K. Local calcium signaling in neurons. Neuron. 2003;40:331ā46.
Bhosale G, Sharpe JA, Sundier SY, Duchen MR. Calcium signaling as a mediator of cell energy demand and a trigger to cell death. Ann N Y Acad Sci. 2015;1350:107ā16.
Brini M, Cali T, Ottolini D, Carafoli E. Neuronal calcium signaling: function and dysfunction. Cell Mol Life Sci. 2014;71:2787ā814.
Rizzuto R, De SD, Raffaello A, Mammucari C. Mitochondria as sensors and regulators of calcium signalling. Nat Rev Mol Cell Biol. 2012;13:566ā78.
Giorgio V, Guo L, Bassot C, Petronilli V, Bernardi P. Calcium and regulation of the mitochondrial permeability transition. Cell Calcium. 2018;70:56ā63.
Cheng XT, Sheng ZH. Developmental regulation of microtubule-based trafficking and anchoring of axonal mitochondria in health and diseases. Dev Neurobiol. 2020;81:284ā99.
Sheng ZH. The interplay of axonal energy homeostasis and mitochondrial trafficking and anchoring. Trends Cell Biol. 2017;27:403ā16.
Sheng ZH, Cai Q. Mitochondrial transport in neurons: impact on synaptic homeostasis and neurodegeneration. Nat Rev Neurosci. 2012;13:77ā93.
Palikaras K, Tavernarakis N. Regulation and roles of mitophagy at synapses. Mech Ageing Dev. 2020;187:111216.
Burgoyne RD, Helassa N, McCue HV, Haynes LP. Calcium sensors in neuronal function and dysfunction. Cold Spring Harb Perspect Biol. 2019;11:a035154.
Cereghetti GM, Stangherlin A, Martins de BO, Chang CR, Blackstone C, Bernardi P, et al. Dephosphorylation by calcineurin regulates translocation of Drp1 to mitochondria. Proc Natl Acad Sci USA. 2008;105:15803ā8.
Rambold AS, Kostelecky B, Elia N, Lippincott-Schwartz J. Tubular network formation protects mitochondria from autophagosomal degradation during nutrient starvation. Proc Natl Acad Sci USA. 2011;108:10190ā5.
Gomes LC, Di BG, Scorrano L. During autophagy mitochondria elongate, are spared from degradation and sustain cell viability. Nat Cell Biol. 2011;13:589ā98.
Medina DL, Di Paola S, Peluso I, Armani A, De Stefani D, Venditti R, et al. Lysosomal calcium signalling regulates autophagy through calcineurin and TFEB. Nat Cell Biol. 2015;17:288ā99.
Nakazawa A, Usuda N, Matsui T, Hanai T, Matsushita S, Arai H, et al. Localization of calcineurin in the mature and developing retina. J Histochem Cytochem. 2001;49:187ā95.
Qu J, Matsouaka R, Betensky RA, Hyman BT, Grosskreutz CL. Calcineurin activation causes retinal ganglion cell degeneration. Mol Vis. 2012;18:2828ā38.
Huang W, Fileta JB, Dobberfuhl A, Filippopolous T, Guo Y, Kwon G, et al. Calcineurin cleavage is triggered by elevated intraocular pressure, and calcineurin inhibition blocks retinal ganglion cell death in experimental glaucoma. Proc Natl Acad Sci USA. 2005;102:12242ā7.
Bertholet AM, Millet AM, Guillermin O, Daloyau M, Davezac N, Miquel MC, et al. OPA1 loss of function affects in vitro neuronal maturation. Brain. 2013;136:1518ā33.
Dayanithi G, Chen-Kuo-Chang M, Viero C, Hamel C, Muller A, Lenaers G. Characterization of Ca2+ signalling in postnatal mouse retinal ganglion cells: involvement of OPA1 in Ca2+ clearance. Ophthalmic Genet. 2010;31:53ā65.
Kamei S, Chen-Kuo-Chang M, Cazevieille C, Lenaers G, Olichon A, Belenguer P, et al. Expression of the Opa1 mitochondrial protein in retinal ganglion cells: its downregulation causes aggregation of the mitochondrial network. Investig Ophthalmol Vis Sci. 2005;46:4288ā94.
Kushnareva YE, Gerencser AA, Bossy B, Ju WK, White AD, Waggoner J, et al. Loss of OPA1 disturbs cellular calcium homeostasis and sensitizes for excitotoxicity. Cell Death Differ. 2013;20:353ā65.
Herkenne S, Ek O, Zamberlan M, Pellattiero A, Chergova M, Chivite I, et al. Developmental and tumor angiogenesis requires the mitochondria-shaping protein Opa1. Cell Metab. 2020;31:987ā1003 e1008.
Davies VJ, Hollins AJ, Piechota MJ, Yip W, Davies JR, White KE, et al. Opa1 deficiency in a mouse model of autosomal dominant optic atrophy impairs mitochondrial morphology, optic nerve structure and visual function. Hum Mol Genet. 2007;16:1307ā18.
White KE, Davies VJ, Hogan VE, Piechota MJ, Nichols PP, Turnbull DM, et al. OPA1 deficiency associated with increased autophagy in retinal ganglion cells in a murine model of dominant optic atrophy. Investig Ophthalmol Vis Sci. 2009;50:2567ā71.
Irwin WA, Bergamin N, Sabatelli P, Reggiani C, Megighian A, Merlini L, et al. Mitochondrial dysfunction and apoptosis in myopathic mice with collagen VI deficiency. Nat Genet. 2003;35:367ā71.
Hardie DG, Ross FA, Hawley SA. AMPK: a nutrient and energy sensor that maintains energy homeostasis. Nat Rev Mol Cell Biol. 2012;13:251ā62.
Mihaylova MM, Shaw RJ. The AMPK signalling pathway coordinates cell growth, autophagy and metabolism. Nat Cell Biol. 2011;13:1016ā23.
Qi D, Young LH. AMPK: energy sensor and survival mechanism in the ischemic heart. Trends Endocrinol Metab. 2015;26:422ā9.
Miller KE, Sheetz MP. Axonal mitochondrial transport and potential are correlated. J Cell Sci. 2004;117:2791ā804. Pt 13
Cinar H, Keles S, Jin Y. Expression profiling of GABAergic motor neurons in Caenorhabditis elegans. Curr Biol. 2005;15:340ā6.
Schuske K, Beg AA, Jorgensen EM. The GABA nervous system in C. elegans. Trends Neurosci. 2004;27:407ā14.
Bevan RJ, Williams PA, Waters CT, Thirgood R, Mui A, Seto S, et al. OPA1 deficiency accelerates hippocampal synaptic remodelling and age-related deficits in learning and memory. Brain Commun. 2020;2:fcaa101.
Williams PA, Piechota M, von Ruhland C, Taylor E, Morgan JE, Votruba M. Opa1 is essential for retinal ganglion cell synaptic architecture and connectivity. Brain. 2012;135:493ā505.
Trifunovic A, Larsson NG. Mitochondrial dysfunction as a cause of ageing. J Intern Med. 2008;263:167ā78.
Narendra DP, Youle RJ. Neurodegeneration: trouble in the cellās powerhouse. Nature. 2012;483:418ā9.
Ray A, Martinez BA, Berkowitz LA, Caldwell GA, Caldwell KA. Mitochondrial dysfunction, oxidative stress, and neurodegeneration elicited by a bacterial metabolite in a C. elegans Parkinsonās model. Cell Death Dis. 2014;5:e984.
Lin MT, Beal MF. Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases. Nature. 2006;443:787ā95.
Bakula D, Scheibye-Knudsen M. MitophAging: mitophagy in aging and disease. Front Cell Dev Biol. 2020;8:239.
Doxaki C, Palikaras K. Neuronal mitophagy: friend or foe? Front Cell Dev Biol. 2020;8:611938.
Lou G, Palikaras K, Lautrup S, Scheibye-Knudsen M, Tavernarakis N, Fang EF. Mitophagy and neuroprotection. Trends Mol Med. 2020;26:8ā20.
Park HG, Yi H, Kim SH, Yu HS, Ahn YM, Lee YH, et al. The effect of cyclosporine A on the phosphorylation of the AMPK pathway in the rat hippocampus. Prog Neuropsychopharmacol Biol Psychiatry. 2011;35:1933ā7.
Romanello V, Scalabrin M, Albiero M, Blaauw B, Scorrano L, Sandri M. Inhibition of the fission machinery mitigates OPA1 impairment in adult skeletal muscles. Cells. 2019;8:597.
Burman JL, Pickles S, Wang C, Sekine S, Vargas JNS, Zhang Z, et al. Mitochondrial fission facilitates the selective mitophagy of protein aggregates. J Cell Biol. 2017;216:3231ā47.
Osellame LD, Singh AP, Stroud DA, Palmer CS, Stojanovski D, Ramachandran R, et al. Cooperative and independent roles of the Drp1 adaptors Mff, MiD49 and MiD51 in mitochondrial fission. J Cell Sci. 2016;129:2170ā81.
Sarzi E, Seveno M, Piro-Megy C, Elziere L, Quiles M, Pequignot M, et al. OPA1 gene therapy prevents retinal ganglion cell loss in a dominant optic atrophy mouse model. Sci Rep. 2018;8:2468.
Fang EF, Hou Y, Palikaras K, Adriaanse BA, Kerr JS, Yang B, et al. Mitophagy inhibits amyloid-beta and tau pathology and reverses cognitive deficits in models of Alzheimerās disease. Nat Neurosci. 2019;22:401ā12.
Franco-Iborra S, Plaza-Zabala A, Montpeyo M, Sebastian D, Vila M, Martinez-Vicente M. Mutant HTT (huntingtin) impairs mitophagy in a cellular model of Huntington disease. Autophagy. 2021;17:672ā89.
Vossel KA, Zhang K, Brodbeck J, Daub AC, Sharma P, Finkbeiner S, et al. Tau reduction prevents Abeta-induced defects in axonal transport. Science. 2010;330:198.
Zaninello M, Scorrano L. Rapidly purified ganglion cells from neonatal mouse retinas allow studies of mitochondrial morphology and autophagy. Pharm Res. 2018;138:16ā24.
Wang X, Schwarz TL. Imaging axonal transport of mitochondria. Methods Enzymol. 2009;457:319ā33.
Scorrano L, Oakes SA, Opferman JT, Cheng EH, Sorcinelli MD, Pozzan T, et al. BAX and BAK regulation of endoplasmic reticulum Ca2+: a control point for apoptosis. Science. 2003;300:135ā9.
Quintana-Cabrera R, Quirin C, Glytsou C, Corrado M, Urbani A, Pellattiero A, et al. The cristae modulator optic atrophy 1 requires mitochondrial ATP synthase oligomers to safeguard mitochondrial function. Nat Commun. 2018;9:3399.
Acknowledgements
The authors thank A. Pasparaki for technical support with experiments and D. Bison for technical support with imaging of RGCs. The authors thank E. M. Jorgensen for C. elegans strains expressing mitochondria-targeted GFP and cytoplasmic mCherry in GABA motor neurons. Some nematode strains used in this work were provided by the Caenorhabditis Genetics Center, which is funded by the National Center for Research Resources of the National Institutes of Health. The authors thank A. Fire for plasmid vectors.
Funding
KP was supported by a grant from the Hellenic Foundation for Research and Innovation and the General Secretariat for Research and Technology (GSRT). This work was funded by grants from the European Research Council (ERC GA695190, MANNA; ERC-GA737599, NeuronAgeScreen), the European Commission 7th Framework Programme and the Greek GSRT (to NT), and Telethon Italy GGP15091 and GGP19089 (to LS).
Author information
Authors and Affiliations
Contributions
MZ, KP, NT, and LS: conceptualization and manuscript writing; MZ and KP: data acquisition and analysis and figure preparation; AS: data acquisition and analysis; NT and LS: supervision and funding acquisition; and all authors: manuscript revision.
Corresponding authors
Ethics declarations
Competing interests
The authors declare no competing interests.
Ethics approval and consent to participate
All mice procedures were performed according to the approved protocols (protocol 32/2011 CEASA and 318/2015 Ministry of Health to LS).
Additional information
Publisherās note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Edited by N. Chandel
Supplementary information
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the articleās Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the articleās Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
About this article
Cite this article
Zaninello, M., Palikaras, K., Sotiriou, A. et al. Sustained intracellular calcium rise mediates neuronal mitophagy in models of autosomal dominant optic atrophy. Cell Death Differ 29, 167ā177 (2022). https://doi.org/10.1038/s41418-021-00847-3
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/s41418-021-00847-3
This article is cited by
-
OPA1 drives macrophage metabolism and functional commitment via p65 signaling
Cell Death & Differentiation (2023)
-
Mitochondrial Lon-induced mitophagy benefits hypoxic resistance via Ca2+-dependent FUNDC1 phosphorylation at the ER-mitochondria interface
Cell Death & Disease (2023)
-
PINK1 and Parkin regulate IP3R-mediated ER calcium release
Nature Communications (2023)
-
VDAC1 regulates neuronal cell loss after retinal trauma injury by a mitochondria-independent pathway
Cell Death & Disease (2022)
-
Chronic inhibition of the mitochondrial ATP synthase in skeletal muscle triggers sarcoplasmic reticulum distress and tubular aggregates
Cell Death & Disease (2022)