The extensive use of amphetamines to treat attention deficit hyperactivity disorders in children provides a compelling rationale for understanding the mechanisms of action of amphetamines and amphetamine-related drugs. We have previously shown that acute amphetamine (AMPH) regulates the trafficking of both dopamine and glutamate transporters in dopamine neurons by increasing activation of the small GTPase RhoA and of protein kinase A. Here we demonstrate that these downstream signaling events depend upon the direct activation of a trace amine-associated receptor, TAAR1, an intracellular G-protein coupled receptor (GPCR) that can be activated by amphetamines, trace amines, and biogenic amine metabolites. Using cell lines and mouse lines in which TAAR1 expression has been disrupted, we demonstrate that TAAR1 mediates the effects of AMPH on both RhoA and cAMP signaling. Inhibition of different Gα signaling pathways in cell lines and in vivo using small cell-permeable peptides confirms that the endogenous intracellular TAAR1 couples to G13 and to GS α-subunits to increase RhoA and PKA activity, respectively. Results from experiments with RhoA- and PKA-FRET sensors targeted to different subcellular compartments indicate that AMPH-elicited PKA activation occurs throughout the cell, whereas G13-mediated RhoA activation is concentrated near the endoplasmic reticulum. These observations define TAAR1 as an obligate intracellular target for amphetamines in dopamine neurons and support a model in which distinct pools of TAAR1 mediate the activation of signaling pathways in different compartments to regulate excitatory and dopaminergic neurotransmission.
Amphetamine (AMPH) and a variety of AMPH analogues have well-established actions as substrates and competitive inhibitors of the dopamine, norepinephrine, and/or serotonin transporters (DAT, NET, and/or SERT). These compounds gain entry into neurons through DAT, NET, and/or SERT, displace neurotransmitters from vesicular stores and facilitate efflux through the plasma membrane carriers. In addition, we have shown that AMPH activates signal transduction pathways that lead to the internalization of the DAT and of the neuronal glutamate transporter, EAAT3 [1, 2], through a series of intracellular events that appear to be distinct from the established actions of competitive inhibitors of dopamine (DA) transport. Application of AMPH to cell lines, cultured DA neurons or midbrain slices, leads to the activation of the small GTPases, RhoA and Rac-1. Activation of RhoA and subsequent cytoskeletal remodeling mediate internalization of the transporters by an endocytic pathway. However, AMPH also modulates cAMP concentrations which stimulate protein kinase A (PKA)-phosphorylation of Rho, reducing its activity.
Cocaine and other drugs that inhibit the transport of AMPH readily block the effects of AMPHs on transporter trafficking , GTPase signaling, and PKA activation [2, 3] consistent with the idea that AMPHs trigger these events within the cell. The activation of both RhoA and PKA signaling pathways occurs in cells that lack the capacity for DA synthesis and vesicular packaging, which suggests that the effects of AMPH are not mediated by DA. These apparent direct effects of AMPH on signaling suggests the existence of a novel intracellular target for the drug and led us to examine potential intracellular targets for AMPH and other related compounds.
Here we show that the trace amine associated receptor 1 (TAAR1) serves as a direct intracellular target for amphetamines in DA neurons. TAAR1 is an intracellular GPCR stimulated by a variety of trace amines and monoamines, including AMPH [4, 5]. Multiple reports support a role for TAAR1 in the actions of psychostimulants. TAAR1 knockout (KO) mice are hypersensitive to AMPH , and antagonists of TAAR1 modulate the locomotor activation produced by methamphetamine , cocaine , and other psychostimulants. The addictive properties of methamphetamine [9, 10] and cocaine [11,12,13] also appear to be regulated by the receptor.
Using transgenic mice and cell lines that lack the TAAR1 receptor we now demonstrate that the intracellular effects of AMPH, including both the elevation in cAMP and the increased RhoA activity, depend upon TAAR1 activation. We use a combination of gene disruption technologies, expression of targeted FRET sensors and the introduction of competitive peptides to prevent specific GPCR G-protein α-subunit interactions to determine the origin of and mechanism through which TAAR1 initiates both GTPase and PKA signaling cascades. We observe in cell lines and neurons that when TAAR1 is activated by AMPH within the cell, it couples through a G-protein α subunit, G13, commonly associated with RhoA GTPase activation. RhoA signaling is concentrated near the endoplasmic reticulum (ER). The intracellular AMPH-mediated activation of PKA by TAAR1 does not localize specifically to ER but appears more broadly distributed throughout the cell with most robust activation occurring within membranes not associated with lipid rafts.
Materials and methods
Cell lines: HEK293 and SK-N-SH cells were obtained from ATTC and maintained in DMEM with 5% fetal bovine serum and Penn/Strep antibiotics. Cells were transfected with Lipofectamine 2000 according to the manufacturer’s directions (Invitrogen). The mutant G alpha- KO cell lines were generous gifts from Dr. Asuka Inoue (Graduate School of Pharmaceutical Sciences Tohoku University 6–3, Aoba, Aramaki, Aoba-ku, Sendai, Miyagi, 980–8578 Japan) and Dr. Jurgen Wess (NIDDK, NIH). Rescue of the G12 and G13 subunits was performed with plasmids graciously provided to us by Dr. David Sibley. TAAR1 gene KO in the HEK293 cell line was developed using CRISPR/Cas9 genome editing technology. The CRISPR guide RNA target site (CCTGTACAGTTTAATGGTGCTCA) near the 5′ end of the human TAAR1 gene was selected using the online tool at MIT from Dr. Feng Zhang’s laboratory (http://crispr.mit.edu). Oligonucleotides (AAACGTACAGTTTAATGGTGCTCAC and CATGTCAAATTACCACGAGTGCCAC) for the target were synthesized, annealed, and cloned into the CRISPR vector, SpCas9-2A-Puro (PX459, Addgene plasmid # 62988), and used to generate a plasmid, named pCR3-hTA1, that encodes a CRISPR guide RNA (gRNA) against human TAAR1 gene. The pCR3-TA1 plasmid was introduced into HEK293 cells by transfection with Lipofectamine 2000 and cells stably expressing the vector were selected with puromycin. The human TAAR1 gene in the stable cell lines was amplified by PCR with specific primers (hTA1F: GATTGACAGCCCTCAGGAATGATG and hTA1B: GAACTCAATTCCAAAAATAATTTACA) and screened for mutations with Surveyor Mutation Detection Kit (Transgenomic Limited). The human TAAR1 gene PCR products with mutations were cloned into pCR2.1-TOPO vector (Thermo Fisher Scientific) and sequenced. A mutant HEK293 cell line with a deletion mutation of two nucleotides at the 27th tyrosine codon of human TAAR1 gene in both alleles resulted in the formation of a premature stop codon, TAC (Tyr)- >TAG (Stop), which leads to the homozygous KO of the human TAAR1 gene was selected. The mutant cell line was designated as TAAR1 KO HEK293 cell line. To rescue the deficits due to the homozygous KO of the taar1 gene, we developed a mutant TAAR1 gene that encodes wild-type (WT) TAAR1 protein but carries two point mutations at the guide RNA target site (CTCTGTATAGTTTAATGGTGCTCA), which confers the resistance against the gRNA to the TAAR1 gene.
TAAR1 KO animals: The TAAR1 KO mice (Taar1 Ko mice) were a generous gift from Dr. Greg Miller from the NERC, NIH grant OD011103. Tissue derived from both male and female animals aged 12–24 weeks was used for the RhoA activation assays, as well as the biotinylation studies. Results were similar across the sexes and have been presented cumulatively here. Animals were housed with 12:12 h light/dark cycles and food/water was available ad libitum.
All assays were done in accordance with the National Institutes of Health Animal Care Committee or the OHSU Institutional Animal Care Committee.
3H-neurotransmitter uptake assays: DAT and EAAT3 function were assessed with 3H-neurotransmitter uptake assays. In all, 20 μM cold and 100 nM hot DA or 250 μM cold and 50 nM hot glutamate were used for 10 min in PBS supplemented with Mg2+ and Ca2+. In this, as with all cell culture assays, the procedure was performed from transfection to uptake at least three independent times. A single well is considered n for statistical purposes.
Immunochemistry: Cells were fixed with 4% paraformaldehyde for 20 min at 4 °C, permeabilized with 0.125% Triton X-100 in PBS and blocked with 10% normal goat serum (NGS) for 1 h. Primary antibodies were applied overnight in 5% NGS at 1:1000. Secondary antibodies were applied for 1–2 h at room temperature, diluted 1:1000 in 5% NGS. DAPI (1:10,000) was used to counterstain the nuclei for 5 min prior to mounting in Fluoromount Aquesous Mounting Medium (Sigma, F4680).
Confocal microscopy and FRET imaging: All imaging was performed on a Nikon A1Rsi confocal microscope. For FRET microcopy, cells were transfected and imaged 12–48 h later. In these assays, serum starved cells did not exhibit a remarkable difference from those maintained under normal conditions and the data have been pooled. Under 405 nm illumination, CFP and YFP images were collected. After background subtraction, CFP/YFP ratios were determined and normalized to the 2 min prior to treatment. Cells that did not respond to epinephrine for AKAR4 or calpeptin (Cytoskeleton Rho activator I) for the RhoA sensor were eliminated from analysis and included <~15% of the total cells.
Rho activation assays: Glutathione-S-transferase conjugated to Rho-binding domain of Rhotekin (GST–RBP) protein was grown in BL21 bacteria and isolated with glutathione-agarose, as described previously . Cells or acute brain slices were treated and the cells were lysed in 1% Triton X-100, 150 mM NaCl, 5 mM EDTA, and 50 mM Tris, pH 7.5, containing a protease inhibitor. Cell lysates and GST–RBP beads were incubated overnight at 4 °C. Activated GTP-bound RhoA adhered to the GST–RBP. RhoA was eluted in loading buffer, run on Bis-Tris glycine gels and probed for with an antibody against RhoA. When these assays were performed on acute slices, similar to biotinylation assays, at least three slices were used on three different experimental days.
Biotinylation assays: Cell surface expression of proteins was assessed by biotinylation assays in cell culture and acute brain slices as described previously . Briefly, after cells or tissue was treated with vehicle or experimental conditions, they were chilled to halt trafficking. Proteins located at the cell surface were biotinylated with 2 mg/ml sulfosuccinimidyl 2-(biotinamido) methyl-1,3-dithiopropionate (sulfo-NHS-SS-biotin) (Pierce, Rockford, IL). Labeling was quenched with 100 mM glycine and lysates were made of the preparation in 1% Triton X-100, 150 mM NaCl, 5 mM EDTA, and 50 mM Tris, pH 7.5, containing a protease inhibitor mixture (Roche Molecular Biochemicals, Indianapolis, IN). Biotinylated proteins were isolated by Ultralink immobilized NeutrAvidin beads (Pierce) and analyzed by western blot on Invitrogen Tris-Glycine gels.
Plasmid constructs: The small targeting motifs added by the Zhang laboratory to AKAR4 (Addgene #61619) and, here, to the Rho-FRET sensor are outlined in table 1. Briefly, the lipid raft targeting motif was derived from the Lyn kinase amino-terminus and the nonraft plasma membrane signaling was distinguished by a motif (CAAX) derived from the GTP-ase KRAS . Cytosolic targeting was achieved by a carboxy-terminus (C-terminus) motif of a nuclear export signal  and targeting of AKAR4 to the ER was mediated by an amino-terminus domain derived from cytochrome 450 . Motifs were added to the plasmids with NEB Q5 Site-Directed mutagenesis system.
The GPCR α-subunit interfering sequences were graciously provided by the Hamm lab at Vanderbilt University. The TAT peptides used in this study were designed based on their previous reports  as outlined in table 2, and ordered from LifeTein.
Electrophysiological recordings: Mice were deeply anesthetized with isoflurane and brains were rapidly removed and placed in ice cold “cutting buffer” containing (in mM): 75 NaCl, 2.5 KCl, 0.1 CaCl2, 6 MgSO4, 1.2 NaH2PO4, 25 NaHCO3, 2.5 D-Dextrose, and 50 Sucrose. Midbrain horizontal slices (~230 μm) were cut in 95% O2 and 5% CO2 oxygenated cutting buffer. Slices were incubated in warm (35 °C) 95% O2 and 5% CO2 oxygenated artificial cerebrospinal fluid (aCSF) containing kynurenic acid (500 nM) for at least 40 min and maintained at room temperature afterward until transfer to a recording chamber. The aCSF contained (in mM): 126 NaCl, 2.5 KCl, 2.4 CaCl2, 1.2 MgCl2, 1.2 NaH2PO4, 21.4 NaHCO3, 11.1 D-Dextrose, pH 7.4, and the osmolarity was adjusted to 300–310 mOsm. Whole cell patch clamp recordings were made from visually identified substantia nigra pars compacta neurons and further characterized by the presence of a hyperpolarization-activated membrane rectification (Ih current). Patch pipettes were pulled from borosilicate glass (1.5 mm diameter; WPI, Sarasota, FL) on a two-stage puller (PP83, Narishige, Tokyo, Japan). Pipettes had a resistance of 2–4 Mohm, when filled with the intracellular solution containing (in mM): 130 CsCl, 5.4 KCl, 0.1 CaCl2, 2MgCl2, 10 HEPES, 1.1 EGTA, 30 D-Dextrose, 4 Mg-ATP, and 1 Na-GTP; pH was adjusted to 7.2–7.3, and the osmolarity was adjusted to 280–290 mOsm. Whole cell series resistance was compensated by ~80%. Oxygenated aCSF at 32 °C was used for recording and extracellular solution exchange was achieved by height-controlled perfusion system with speed ~3–4 ml/min. Evoked excitatory synaptic currents were recorded at a holding potential of −70 mV. Currents were collected at 2 kHz and digitized at 5 kHz using either an Axopatch 700 A or 200B amplifiers controlled by Axograph Data Acquisition software. NMDAR EPSCs were evoked in nominally Mg2+-free aCSF solution containing 10 µM NBQX and 10 µM glycine with a bipolar stimulating electrode placed ~200–300 mm distally from the recorded cell. Stimulation pulses (0.02 ms) were delivered at 0.05 Hz. During each experiment, a voltage step of −10 mV from the holding potential was applied periodically to monitor cell capacitance and access resistance. Recordings in which access resistance or capacitance changed by >15% during the experiment were excluded from data analysis. To avoid activation of DA receptors and alpha-adrenergic receptors caused by increases in extracellular DA release, the following inhibitors were included in the aCSF recording solution: DA-D1: SCH 23390 1 µM; DA-D2: eticlopride 10 µM; alpha-adrenergic receptors: prazosin 1 µM. Bicuculline (10 µM) and strychnine (1 µM) were also included in the bath during recordings to eliminate GABAA and glycine receptor activation. The G13 inhibitor and scrambled peptides were included in the intracellular pipette solutions. One neuron was recorded per slice and two slices were typically used per mouse.
Quantification and statistical analysis: Blots were quantified by densitometry with FIJI. Statistical analysis was carried out with Graphpad Prism 6 using one- or two-way ANOVAs with or Dunnett or Sidak corrections. All cell culture assays were performed on a minimum of three different cultures, plated and transfected on at least two separate days. Cell tissue assays were performed on at least three samples on three different days. Where possible, experimenters were blinded to the conditions being tested. All values in the figures indicate mean ± SEM. Precise N values that are not indicated in the figure are provided here, reading left to right, as follows: Fig. 1c: 6,5,3,3,6,9,3,3; 1D: 3,3,3,3,3,3; 1E: 4,4,5,3,4,4; 1F: 4,3,4; 2C: 9,9,9,9,9,9; 2D: 9,9,9,9,9,9; 4A: 14,12,11, 12,15,12,12,9; 4B:18,12,18,12,18,12,18,12,18; 4C: 18,18,11,14,12,12,14; 4D: S-26,13–30,Scr-20; 4E: S-29,13–24,Scr-20; 4G: 6,9,9,9; 5A: 5,3,4,3,5,3,4,3.
Drugs and reagents: Primary antibodies used in this study include Rabbit anti-Rho (abcam Ab40673), Rabbit Anti Rho-S188P (abcam Ab41435), Rabbit anti-DAT (Amara Lab generated), Rabbit anti-EAAT3 (Alpha diagnostics EAAC11-A), Chicken anti-Tyrosine Hydroxylase (Aves Labs, Inc. TYH), and Rabbit anti-G13 (abcam Ab128900). We used the following secondary antibodies: Donkey anti-chicken Alexa488 (Jackson Immuno Research Labs 120990), Goat anti-rabbit Alexa-568 (Thermo Fisher Scientific A-11036), and Donkey anti-rabbit HRP (Thermo Scientific 31458). Our custom peptides were synthesized by LifeTein. The (+)-Amphetamine hemisulfate [(αS)-α-Methylbenzeneethanamine sulfate] provided by the National Institute on Drug Abuse Drug Supply Program Division of Therapeutics and Medical Consequences. All other drugs used in this study were from Sigma-Aldrich or Tocris.
Neurotransmitters, trace amines, and AMPHs enter the cell through the DAT and activate the small GTPase RhoA
Using an enhanced RhoA FRET sensor we  first examined whether RhoA could be activated by AMPH in DAT-transfected HEK293 cells, which lack the capacity to synthesize or release biogenic amines (Fig. 1a). We used a RhoA FRET sensor  with the replacement of CFP with the third generation fluorophore mCerulean3  to measure activated RhoA signal in response to AMPH (Figs. 1a and S1). As we previously observed in SK-N-SH cells and neurons in culture, AMPH-induced RhoA activation in HEK293 cells was also dependent upon DAT co-expression (Fig. 1a).
AMPH-induced PKA activation was also assessed in the HEK293 cells using the AKAR4 FRET sensor  with and without DAT co-expression (Fig. 1b). In cells expressing this FRET sensor we consistently observed a small, slow increase in PKA activation even in the absence of DAT that was also present in vehicle treated controls (data not shown). However, with DAT co-expression, AMPH elicited a dramatic activation in PKA.
To determine whether TAAR receptors mediate AMPH activation of Rho, we examined whether different TAAR1 agonists could enhance RhoA activation. In these assays, we assessed RhoA activation with a pulldown assay (see Materials and methods). As observed with AMPH, the application of methamphetamine (10 μM), DA (100 μM), MDMA (100 μM), β-PEA (100 μM), or tyramine (10 μM) resulted in a robust increase in activated RhoA within 10 min of the addition of drugs (Fig. 1c). The ability of these agonists to activate intracellular TAAR1-mediated RhoA signaling displays a pharmacological profile very similar to that reported for the activation of adenylyl cyclase by surface-expressed TAAR1 [4, 5]. However, it is important to note that the effective concentrations in our system also reflect the kinetics of agonist transport through the DAT, its cytoplasmic stability, as well as its affinity for the receptor.
Notably, the TAAR1 agonist octopamine (10 μM) did not activate RhoA in these cells (Fig. 1c). Octopamine is a potent activator of TAAR1 [4, 5] however, it is a poor substrate for DAT . Because the DAT dependence of the effects of TAAR1 agonists on RhoA activation suggests that TAAR1 agonists act intracellularly to stimulate the receptor, we permeablized the HEK293 cells with streptolysin O to allow octopamine access to the cytoplasm . In the presence of streptolysin O, octopamine produces an approximately twofold increase in activated Rho, whereas streptolysin O had no effect on its own, demonstrating that a TAAR1 agonist that is not a substrate for DAT can activate Rho-dependent signaling once it enters the cell. These studies also imply that entry through the DAT may not be prerequisite for activation of intracellular signaling by TAAR1; in fact, two recently-developed compounds from Roche (RO5166017 and RO5203648) show TAAR1 agonist activity in DAT KO mice and thus may gain access to the cell interior via other avenues [25, 26].
Further evidence supporting the interpretation that DA and AMPH-like compounds act within the cell to produce RhoA activation, we found that the AMPH-induced activation of RhoA was blocked by inhibiting transport through DAT with the non-transported competitive DAT inhibitors cocaine (100 μM) and methylphenidate (100 μM; Fig. 1d). These compounds did not affect RhoA on their own indicating that their actions were through inhibition of AMPH entry into the cell.
AMPH-stimulated transporter internalization and RhoA activation is not observed in tissue from TAAR1 homozygous knockout mice
The pharmacology of the RhoA activation in HEK293 cells was similar to that of PKA activation by TAAR1. To address whether TAAR1 receptors also mediate RhoA activation in dopamine neurons in the brain and subsequent neurotransmitter transporter trafficking, acute brain slices were prepared from the midbrain of WT and littermate TAAR1 KO animals and treated with AMPH or vehicle control for 30 min. Assessing biotinylated proteins at the plasma membrane showed that, similar to previous reports , AMPH-induced trafficking of DAT was not observed in TAAR1 KO mice (Fig. 1e). We also found that internalization of EAAT3 was not observed in these animals. Biotinylation data from the heterozygotes was not statistically different from the WT or KO for either the DAT or the EAAT3. In similar studies in acute brain slices, treated with AMPH or vehicle control for 15 min, WT midbrain slices exhibited AMPH-stimulated RhoA activation, when assessed with the GST–RBP pull-down assay, but we found no increase in RhoA activation in AMPH-treated homozygous KO animals (Fig. 1f, g). Heterozygous mice displayed an intermediate phenotype in the RhoA activation assays, though this did not reach statistical significance.
AMPH does not activate RhoA or PKA in cells that lack the TAAR1 gene
To more completely characterize the role of TAAR1 in AMPH-induced PKA and RhoA activation, we designed TAAR1 knockout cells. Using CRISPR/Cas-9 technology to disrupt endogenous TAAR1 expression in HEK293 cells (see Materials and methods) we observed that KO of the TAAR1 receptor in HEK293 cells did eliminate activation of PKA by AMPH as assessed by the AKAR4 PKA FRET sensor (Fig. 2a). Similarly, AMPH-mediated RhoA activation was also not evident in the TAAR1 knockdown cell line (Fig. 2b).
AMPH-stimulated internalization of DAT  and EAAT3  are Rho-dependent events, so we assessed whether internalization was also mediated by TAAR1. Using transport activity as a measure of cell surface localization, the uptake of 3H-DA or 3H-Glu was assessed following AMPH pretreatment of wild-type HEK293 cells and TAAR1 KO cells transiently expressing either DAT alone or DAT and EAAT3. As observed in studies of TAAR1 KO mice , the AMPH-induced decrease in surface DAT was absent in the TAAR1 KO cells (Fig. 2c). Furthermore, we found that AMPH-induced loss of EAAT3 function was also absent in the KO cells (Fig. 2d). AMPH-induced internalization of both DAT and EAAT3 was restored in TAAR1 KO cells transiently transfected with a CRISPR-Cas9 resistant TAAR1 construct (Fig. 2c, d, see Materials and methods). These data confirm that AMPH-induced cAMP and RhoA signaling is eliminated in our KO cell line, implicating TAAR1 in the initiation of both of these AMPH-activated biochemical cascades.
Cells that lack TAAR1 receptors show no regulation of RhoA by PKA-dependent phosphorylation. We previously showed that increases in PKA activity leads to phosphorylation of RhoA at S188 , which removes it from the activated pool . Thus, RhoA activation in response to AMPH rises initially, but then falls with time, as a consequence of S188 phosphorylation . AMPH-treated wild-type HEK293 cells displayed a pattern of RhoA activation that peaked at 10 min (Fig. 2e). RhoA activation returned to baseline by 30 min after AMPH application (Fig. 2e) paralleling the increase in phosphorylation of RhoA (Fig. 2f). However, in cells lacking TAAR1, AMPH treatment produced no changes in RhoA activation. When the phosphorylation state of S188 was assessed, we observed no increase in phosphorylated RhoA after AMPH treatment in the TAAR1 KO cells. These observations confirm that AMPH-mediated PKA activation and phosphorylation of RhoA depends on TAAR1 (Fig. 2f) and also support the idea that TAAR1 couples to RhoA and PKA signaling pathways within the same cell.
The role of TAAR1 in AMPH stimulated RhoA activation was confirmed by GST–RBD pull-down assays. We observed a similar pharmacological profile of RhoA activation using either the GST–RBD pull-down or the Rho-FRET sensors. In wild-type HEK293 cells, RhoA activation was stimulated by a number of TAAR1 agonists, but methamphetamine, DA, and β-PEA failed to stimulate RhoA activation in the TAAR1 KO cells (Fig. S2).
TAAR1 signaling through PKA and RhoA occur in different intracellular sites
Cumulatively, these data suggest that intracellular TAAR1 activates both PKA and RhoA. To determine whether TAAR1 cAMP- and Rho-signaling pathways are segregated into different subcellular compartments, we used an approach developed by Zhang et al., that fuses compartment-specific targeting motifs to FRET sensors to provide subcellular readouts of signaling pathways. Previous work used this method to target an AKAR4 FRET sensor to the ER, the cytosol, lipid rafts or non-lipid raft plasma membrane domains [16,17,18, 29]. We fused these same motifs to the RhoA sensor to probe potential subcellular domains where RhoA GTPase cascades might occur. The RhoA sensor was expressed similarly to the various subcellular regions in HEK293 and the neuroblastoma cell line SK-N-SH cells as previously reported for the AKAR4 targeted sensors (Figs. 3a, b, S3A and B).
AMPH-mediated PKA stimulation and signaling through the AKAR4 FRET sensors in the different intracellular compartments was observed in all the subcellular domains in both SK-N-SH (Fig. 3c) and HEK293 cells (Fig. S3C) cells, slightly favoring the non-raft membrane compartment in SK-N-SH cells (Fig. 3e). As a positive control, epinephrine (250 nM) stimulated PKA activation occurred predominantly in lipid-raft plasma membrane compartments in HEK293 cells (Fig. S3E), consistent with previous reports [16, 30].
All of the targeted RhoA sensors responded to the positive control, calpeptin (Fig. S3F) (Schoenwaelder and Burridge, 1999). AMPH-stimulated RhoA activation was particularly pronounced, when the sensor was targeted to the ER in both HEK293 cells (Fig. S3D) and SK-N-SH cells (Fig. 3b, c). The RhoA sensors that were targeted to the cytosol, lipid raft or non-lipid raft membrane domains did show some RhoA activation in response to AMPH, but less than that seen with the ER-targeted sensor. Baseline responses from all of these sensors were stable. These data indicate that TAAR1 receptors signal through RhoA- and PKA-pathways in distinct subcellular compartments; upon activation of TAAR1, RhoA signaling occurs in a discrete pattern near the ER, whereas PKA-signaling extends broadly throughout the cell.
AMPH-induced RhoA activation in HEK293 cells is mediated by G13
The TAAR1 receptor has been demonstrated to couple to the Gs G-protein α-subunit, resulting in activation of adenylyl cyclase and elevation of cAMP. However, our data indicate that it also couples to a pathway that facilitates Rho-activation. Several G-protein α-subunits are known to couple to RhoGTPase guanine nucleotide exchange factors that lead to the activation of RhoA including Gq, G12, and G13 [31, 32].
HEK293 cell lines with selective deletions of the genes for α-subunits Gs, Gq, or G12/13 [33,34,35] were transiently transfected with the DAT or the DAT and EAAT3 transporters and treated with AMPH or vehicle control. 3H-DA or 3H-Glu uptake assays were used to estimate the surface expression of transporters on the plasma membrane. After AMPH treatment, only G12/13 KO cells lacked a response to AMPH, consistent with the idea that TAAR1 activation of G12/13 α-subunits couples to RhoA signaling in order to mediate AMPH-stimulated DAT and EAAT3 internalization (Fig. 4a). The loss of response in the G12/13 KO cells was reversed by co-transfection with the G13 α-subunit (Fig. S4).
To further validate the findings obtained using the Gs, Gq, or G12/13 -KO HEK293 lines, we also investigated a model that allows a more transient inhibition of G-protein α-subunits. HEK293 cells were transiently transfected with both the neurotransmitter transporters along with a mini-gene that interferes with Gs, Gq/11, G12, or G13 signaling by expressing a sequence from the C-terminal of the α-subunit that effectively competes for GPCR binding and can selectively prevent α-subunit stimulation [36, 37]. The G13 interfering sequence attenuated the effects of AMPH on trafficking of both EAAT3 and DAT (Fig. 4b). However, Gs, Gq/11, or G12 interfering sequences had no effect on trafficking of either transporter.
Alpha-subunit interfering peptides support the role of G13 in AMPH-induced RhoA activation in cell lines and dopamine neurons
With the aim of examining the acute role of G13 subunits TAAR1-dependent RhoA activation in neurons, we designed short peptides with the interfering domains of Gs, Gq, G11, G12, or G13 , conjugated to a cell-permeable TAT peptide (YGRKKRRQRRR). We tested the efficacy of these peptides in HEK93 cells by applying the peptides for 30 min before AMPH treatment, in order for the peptides to penetrate the cell membrane and block α-subunit mediated processes. We found that only the TAT-G13 interfering peptide could block AMPH-mediated DAT internalization in HEK293 cells (Fig. 4c).
The specificity of the TAT-Gs and TAT-G13 interfering peptides for their downstream signaling pathway was tested in HEK293 cells with either the RhoA FRET sensor (Fig. 4d) or the PKA sensor (Fig. 4e). In addition, we wanted to address whether the two signaling pathways, cAMP and Rho, A are linked sequentially or occur in parallel. Do TAAR1 receptors signal through RhoA with cAMP downstream or vice versa or are there two populations of TAAR1 receptors that operate in parallel, as our targeted FRET assays suggest? AMPH-induced PKA activation was blocked by the TAT-Gs peptide but not the TAT-G13 (Fig. 4e). Similarly, RhoA activation in response to AMPH was blocked by the TAT-G13 peptide but not the TAT-Gs peptide (Fig. 4d). These data support the efficacy of our TAT interfering-peptides for selectively inhibiting either GS or G13 and also refute the idea that the stimulation of PKA and RhoA occurs sequentially. The absence of competition between GS and G13 binding also suggests the different membrane environments, protein interactions or some other process restricts the interaction of each of the two populations of TAAR1 receptors to a particular Gα protein subtype.
Endogenous G13 expression was examined in primary midbrain cultures. We found that TH(+) neurons (green) were also G13(+) (red, Fig. 4f). Immunoreactivity for G13 was observed in discrete, cytoplasmic puncta consistent with a localization at or near ER membranes. We also attempted to examine the intracellular localization of TAAR1 by immunolabeling or by expressing a tagged-TAAR1 protein. Unfortunately, the expression of TAAR1 is below the level of detection by the commercial antibodies currently available. We have also observed that overexpression of TAAR1 or the epitope-tagged TAAR1 favors GS coupling and occludes G13-dependent RhoA activation through the endogenous receptor (data not shown). Thus in our studies, we avoided overexpression systems and used targeted FRET sensors to characterize endogenous TAAR1 signaling in intracellular compartments.
In primary midbrain cultures, DAT-mediated 3H-DA uptake can be used as an assay for the presence of the endogenous DAT at the cell surface. We found that the effects of pretreatment with AMPH that typically induces downregulation of DAT in primary cultures (10 μM, 30 min), were blocked by the TAT-G13 interfering peptide (Fig. 4g). We also examined the effect of the G13 interfering peptide on mature mouse brains expressing TAAR1 and their impact upon the downstream effect of DAT and EAAT3 internalization. When acute brain slices were pretreated with the G13-interfering TAT peptide, the AMPH-mediated loss of cell surface, biotinylated DAT, and EAAT3 was blocked (Fig. 5a, b). AMPH-mediated potentiation of glutamatergic signaling to midbrain dopamine neurons is mediated by internalization  of EAAT3 [1, 39]. Consistent with its role, TAAR1–G13–RhoA in this pathway is provided by evidence that the G13 inhibitory peptide blocks potentiation of NMDA-mediated currents in midbrain dopamine neurons (Fig. 5c, d).
These studies strongly implicate the TAAR1 as the intracellular target of AMPH that initiates the trafficking effects of AMPH on DAT and EAAT3 (Fig. 6). We report here that the cytoplasmic activation of the TAAR1 receptor by intracellular AMPHs leads to activation of both PKA and RhoA signaling pathways. PKA activation occurs through coupling of the receptor to GS-subunits resulting in a signal that propagates in intracellular compartments throughout the cell, whereas RhoA activation occurs through TAAR1 coupling to G13 subunits more preferentially localized near the ER. Using TAT peptides that interfere with the coupling of specific G-proteins as well as targeted RhoA FRET sensors, we have identified a population of TAAR1 receptors that couple to GS and stimulate PKA throughout the cell in response to several agonists, including AMPH. These same agonists also stimulate a distinct population of TAAR1 receptors that couple through G13 to activate RhoA signaling at or near the ER.
AMPH signaling in dopamine neurons is mediated by an intracellular GPCR
Traditionally, GPCR signaling initiates with binding of an extracellular ligand at the cell surface followed by activation of a series of biochemical events within the cell. However, recent studies have demonstrated that GPCRs stimulated at the cell membrane and internalized through a beta-arrestin-mediated process can continue signaling from endosomal compartments, facilitating signaling to intracellular regions distant from the plasma membrane (for review see ). Our data, however, indicate that TAAR1 appears to reside and signal exclusively from one or more intracellular compartments, because activation of the receptor by agonists depends on expression of a membrane transporter or permeabilization of the cell membrane (Fig. 1).
By examining the signaling of endogenous TAAR1 in HEK293 cells and SK-N-SH cells, we found that agonists of TAAR1 must reach the cytoplasm in order to initiate signaling either through transport by a plasma membrane transporter (Fig. 1a, b) or streptolysin O generated perforations in the plasma membrane (Fig. 1c) to gain access to the receptor localized inside the cell. Downstream effects of AMPH activation of TAAR1 in neurons, including DAT and EAAT3 internalization and subsequent enhanced glutamatergic signaling, are all dependent upon DAT expression for AMPH entry into the cell [1, 2, 39]. Others have shown that direct intracellular application of AMPH through an electrophysiological recording pipette triggers DAT internalization in the absence of a functional DAT  further supporting a role for intracellular TAAR1 signaling as a prerequisite for AMPH-dependent trafficking events.
Orientation of the TAAR1 receptor
TAAR1 is a class A GPCR that belongs to the Rhodopsin family . These proteins have seven-transmembrane helices that span throughout the cell membrane, an extracellular amino-terminus (N-terminus) and a cytoplasmic C-terminus. The ligand binds in the cavity formed within the transmembrane bundle that is exposed to the extracellular environment, while G-protein binding is generally ascribed to several intracellular loops and the C-terminus and occurs in the inner leaflet of the plasma membrane . We and others have observed TAAR1-dependent PKA signaling in overexpression systems in the absence of DAT, suggesting that surface applied agonist can access the ligand binding domain and activate the small proportion of receptors that make it to the cell surface. Thus, it appears likely that TAAR1 orientation maintains the C-terminus in the cytoplasm in order to enable GS and G13 signaling. However, this topological arrangement would orient the ligand-binding domain of the receptor within the lumen of the intracellular membrane compartment in which it is found. These data suggest that agonists would need to permeate the cell membrane as well as the membrane of an intracellular compartment in order to reach the ligand binding domain. Most amphetamines and a number of other TAAR1 agonists require a transporter to cross the plasma membrane. However intracellular compartments have different lipid composition and geometry that may allow passage of the agonists across the membrane in order to reach the luminal ligand binding site. In fact, tyramine and β-PEA have been shown to readily diffuse across synthetic lipid bilayers  and the relatively high lipophilicity of amphetamines may also be a factor . The TAAR1 agonists from Roche (RO5166017 and RO5203648) also display effects that are independent of DAT expression supporting a mechanism of entry into the cells distinct from the plasma membrane transporter [25, 26]. Access to the ligand binding site from the cytoplasm could also be achieved through a variety of other mechanisms. Structural studies have demonstrated that some classes of GPCRs have ligand-binding domains that are accessible to ligands from both inside and outside the cell . Alternatively, there could be yet another membrane transporter that facilitates access of TAAR1 ligands to the lumenal face of the compartment where TAAR1 resides. A mechanism involving glutamate transport by a glutamate transporter localized on ER membranes has been proposed to explain observations of intracellular mGluR5 signaling from the ER and nucleus . In fact, the recently described targeting of the organic cation transporter, OCT3 to the outer nuclear membrane could facilitate ligand transport and receptor activation in that compartment . The ability of an endogenous trace amine, tyramine, to be transported by OCT2 suggests another alternative .
Two spatially-distinct signaling pathways are linked to TAAR1 activation
Our data suggest that there are distinct populations of TAAR1 receptors that differ in their coupling to GS or G13 G-protein subunits. The observation that the GS or G13 interfering peptides, which interact with the same domains on TAAR1, display effects that are highly-selective for their respective pathways (Fig. 4d, e) implies a remarkable precision in the localization and organization of the two TAAR1 signaling pathways. It remains unclear whether the two receptor populations are differentially localized or whether they colocalize and are linked to pathways that propagate through different compartments
Specificity of TAAR1 coupling to GS or G13 may be facilitated through a number of different mechanisms. Phosphorylation or any number of other post-translational modifications of a subset-population of TAAR1 receptors may increase their affinity for one over the other. Protein–protein or lipid–protein interactions may also dictate conformations that favor coupling to distinct G-proteins, as described recently for PIP2 and class A GPCRs . Receptor-G-protein precoupling, where G-proteins exist in a complex with GPCRs prior to receptor activation, has been proposed as a mechanism to account for some of the specificity of receptor-G protein coupling, as well as for the rapid kinetics of intracellular responses .
Our results using the TAT-interfering peptides argue against the notion that the two pathways operate sequentially, as hypothesized for GPCRs that change affinity for Gα subunits after stimulation (see Friedman et al. 2002; Chen-Izu et al. 2000; Hill et al. 2003 for reviews). If RhoA-activation preceded PKA activation, the TAT-G13 interfering peptide would also have inhibited subsequent GS signaling and PKA activation that our FRET sensor assay did not detect (Fig. 4e). Similarly, the TAT-GS interfering peptide did not inhibit AMPH-induced RhoA activation, indicating that G13 coupling does not precede GS coupling (Fig. 4d).
Overall, our experimental data support the interpretation of two spatially distinct pathways of TAAR1 signaling. The interfering mini-gene peptides we used are comprised of sequences from the C-terminus of the α-subunit of each G-protein. Despite the differences in the sequence of the C-terminus between the GS and G13 subunits that give the mini-genes their specificity, they are likely to form contacts within the same binding pocket of the TAAR1 receptor. This suggests that a single population of TAAR1 receptors activated by both GS and G13 could not mediate the distinct signaling cascades we observe because both G signaling pathways would be inhibited simultaneously once either of the mini-gene peptides binds to the TAAR1 binding site. In fact, our data illustrate the opposite effect: each mini-gene peptide inhibits signaling to its cognate G protein subunit with precise specificity.
It is important to note that both FRET sensors assess signaling events that occur downstream of TAAR1 activation and thus the resolution of the subcellular domains, where TAAR1 signaling occurs may reflect later steps in the pathway. AKAR4 is a PKA target that is linked to TAAR1 activation by a diffusible second messenger and it is difficult to know whether the broad localization observed with the AKAR4 sensor correlates with the distribution of TAAR1-GS or whether it simply reflects the compartmentalization of downstream signaling events. RhoA activation measured by the RhoA-FRET sensor is also linked to TAAR1 activation by a diffusible factor, perhaps PDZ RhoGEF, which has been shown to regulate G13 interactions in brain (see Momotani et al. 2012 and Siehler 2009 for reviews); however, the Rho-FRET sensor produced a more pronounced activation when localized to the ER supporting distinct subcellular domains of activity for each of these pathways.
Role of AMPH-stimulated activation of RhoA and PKA and DAT/EAAT3 internalization
Although the precise physiological role of TAAR1/G13-mediated DAT internalization remains to be established, it is likely that this pathway evolved to regulate the actions of endogenous amines including β-PEA, tyramine, 3-methoxytyramine, and DA. DA is a TAAR1 agonist (Fig. 1c) and recently, it was shown that the sustained elevation of extracellular DA seen following burst firing appears to be a consequence of DAT internalization by a Rho-dependent mechanism . These results provide the first evidence that dopamine itself can act as a TAAR1 agonist to trigger transporter internalization in vivo.
TAAR1 signaling also has the potential to serve as a sensor of cytoplasmic DA and its metabolites. At high cytosolic concentrations, DA becomes neurotoxic due to the formation of reactive oxygen species and quinones that can cause damage to the neuron . Under normal conditions, DA transported through the DAT from the extracellular space is rapidly repackaged into synaptic vesicles or enzymatically metabolized. However, if cytoplasmic DA concentrations saturate these mechanisms, the reduction in surface levels of DAT mediated by TAAR1/G13 signaling may provide an additional means for maintaining free cytosolic DA below toxic levels.
MDMA and DA have been defined as “partial agonists” for TAAR1 receptors expressed at the cell surface that signal through PKA; however, the pharmacological profile of the two compounds for G13-coupled RhoA activation has not yet been fully characterized. A detailed kinetic analysis of the ability of the various compounds to activate intracellular TAAR1 and whether they display preferential signaling though one of the two pathways is a critical goal for future studies.
The role of TAAR1 in the actions of psychostimulants may be attributed to its direct affinity to these ligands but is also affected by the downstream signaling which it stimulates. This study identifies the spatial distinction of two classes of TAAR1 receptors coupled to either GS and PKA activation or G13 and RhoA activation and is a critical component of how these drugs act. This model suggests new avenues of exploration for the study of GPCRs, as well as the actions of monoaminergic substances in the brain.
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We would like to thank Minghua Li for her technical expertise. SGA and SMU were funded by the Intramural Research Program (ZIAMH002946).
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Underhill, S.M., Hullihen, P.D., Chen, J. et al. Amphetamines signal through intracellular TAAR1 receptors coupled to Gα13 and GαS in discrete subcellular domains. Mol Psychiatry 26, 1208–1223 (2021). https://doi.org/10.1038/s41380-019-0469-2
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