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A rapid and efficient route to benzazole heterocycles

Abstract

This protocol describes a rapid, high-yielding, microwave-mediated route that affords benzazole heterocycles in high crude purity and represents a significant advancement toward an environmentally friendly reaction. The reaction of aryl isothiocyanates with o-nucleophilic anilines produces thiourea intermediates that, in the presence of a carbodiimide-functionalized resin, cyclize to benzazoles with the safe removal of one equivalent of hydrogen sulfide. This procedure takes 8.5 h to complete: 1–3 h for setup, 4.5 h for benzazole formation and 2 h for workup and purification.

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Figure 4: Disposable 1-ml syringe with the plunger removed (top) and a disposable 1-ml syringe with the plunger removed and the end cut off at approximately the 0.8-ml mark (bottom).
Figure 5: Example of a nitrogen flush setup.

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References

  1. Martin, E.J. & Critchlow, R.E. Beyond mere diversity: tailoring combinatorial libraries for drug discovery. J. Comb. Chem. 1, 32–45 (1999).

    Article  CAS  Google Scholar 

  2. Neyts, J. et al. Structure-activity relationship of new anti-hepatitis C virus agents: heterobicycle-coumarin conjugates. J. Med. Chem. 52, 1486–1490 (2009).

    Article  CAS  Google Scholar 

  3. McInnes, C. et al. Inhibitors of Polo-like kinase reveal roles in spindle-pole maintenance. Nat. Chem. Biol. 2, 608–617 (2006).

    Article  CAS  Google Scholar 

  4. Hayashi, S. et al. Novel non-peptide nociceptin/orphanin FQ receptor agonist, 1-[1-(1-methylcyclooctyl)-4-piperidinyl]-2-[(3R)-3-piperidinyl]-1H-benzimidazole: design, synthesis, and structure-activity relationship of oral receptor occupancy in the brain for orally potent antianxiety drug. J. Med. Chem. 52, 610–625 (2009).

    Article  CAS  Google Scholar 

  5. Charifson, P.S. et al. Novel dual-targeting benzimidazole urea inhibitors of DNA gyrase and topoisomerase IV possessing potent antibacterial activity: intelligent design and evolution through the judicious use of structure-guided design and structure-activity relationships. J. Med. Chem. 51, 5243–5263 (2008).

    Article  CAS  Google Scholar 

  6. Siracusa, M.A. et al. Synthesis of new arylpiperazinylalkylthiobenzimidazole, benzothiazole, or benzoxazole derivatives as potent and selective 5-HT1A serotonin receptor ligands. J. Med. Chem. 51, 4529–4538 (2008).

    Article  CAS  Google Scholar 

  7. Pelletier, J.C. et al. Discovery of 6-({4-[2-(4-tert-butylphenyl)-1H-benzimidazol-4-yl]piperazin-1-yl}methyl)quinoxaline (WAY-207024): an orally active antagonist of the gonadotropin releasing hormone receptor (GnRH-R). J. Med. Chem. 52, 2148–2152 (2009).

    Article  CAS  Google Scholar 

  8. Grice, C.A. et al. Identification of a potent, selective, and orally active leukotriene A4 hydrolase inhibitor with anti-inflammatory activity. J. Med. Chem. 51, 4150–4169 (2008).

    Article  CAS  Google Scholar 

  9. Lewis, J.C., Berman, A.M., Bergman, R.G. & Ellman, J.A. Rh(I)-catalyzed arylation of heterocycles via C-H bond activation: expanded scope through mechanistic insight. J. Am. Chem. Soc. 130, 2493–2500 (2008).

    Article  CAS  Google Scholar 

  10. Rodriguez-Rodriguez, C. et al. Design, selection, and characterization of thioflavin-based intercalation compounds with metal chelating properties for application in Alzheimer's disease. J. Am. Chem. Soc. 131, 1436–1451 (2009).

    Article  CAS  Google Scholar 

  11. Gumus, F. et al. Synthesis, cytotoxicity, and DNA interactions of new cisplatin analogues containing substituted benzimidazole ligands. J. Med. Chem. 52, 1345–1357 (2009).

    Article  CAS  Google Scholar 

  12. Yuan, Z., Xiao, Y., Li, Z. & Qian, X. Efficient synthesis of regioisomerically pure bis(trifluoromethyl)-substituted 3,4,9,10-perylene tetracarboxylic bis(benzimidazole). Org. Lett. 11, 2808–2811 (2009).

    Article  CAS  Google Scholar 

  13. Son, Y.-A., Kim, B.-S., Choi, M.-S. & Kim, S.-H. Characterization of new benz-x-azole dye derivatives and metal complexes. Mol. Cryst. Liq. Cryst. 498, 158–164 (2009).

    Article  CAS  Google Scholar 

  14. Kumar, R.V. Synthetic strategies towards benzoxazole ring systems: a review. Asian J. Chem. 16, 1241–1260 (2004).

    CAS  Google Scholar 

  15. Mase, T. & Itoh, T. General and practical synthesis of benzothiazoles. Pure Appl. Chem. 80, 707–715 (2008).

    Article  CAS  Google Scholar 

  16. Alamgir, M., Black, D.St.C. & Kumar, N. Synthesis, reactivity and biological activity of benzimidazoles. Top. Heterocycl. Chem. 9, 87–118 (2007).

    Article  CAS  Google Scholar 

  17. Hausner, S.H. et al. Synthesis of 5- and 6-substituted 2-(4-dimethylaminophenyl)-1,3-benzoxazoles and their in vitro and in vivo evaluation as imaging agents for amyloid plaque. Bioorg. Med. Chem. Lett. 19, 543–545 (2009).

    Article  CAS  Google Scholar 

  18. Fujieda, H. et al. Phenylpropanoic acid derivatives bearing a benzothiazole ring as PPARΔ-selective agonists. Bioorg. Med. Chem. Lett. 17, 4351–4357 (2007).

    Article  CAS  Google Scholar 

  19. Yen, S.K., Koh, L.L., Huynh, H.V. & Andy Hor, T.S. Formation and structures of Pd(II) N,S-heterocyclic carbene-pyridyl mixed-ligand complexes. J. Organomet. Chem. 694, 332–338 (2009).

    Article  CAS  Google Scholar 

  20. Ackermann, L., Althammer, A. & Fenner, S. Palladium-catalyzed direct arylations of heteroarenes with tosylates and mesylates. Angew. Chem. Int. Ed. 48, 201–204 (2009).

    Article  CAS  Google Scholar 

  21. Perkins, J.J., Zartman, A.E. & Meissner, R.S. Synthesis of 2-alkylaminobenzimidazoles. Tetrahedron Lett. 40, 1103–1106 (1999).

    Article  CAS  Google Scholar 

  22. Mohsen, A., Omar, M.E., Sams El-Dine, S.H.A. & Hazzam, A.A.B. New facile synthesis of 2-substituted aminobenzimidazoles. Pharmazie 30, 85–86 (1975).

    CAS  PubMed  Google Scholar 

  23. Kumar, A., Maurya, R.A. & Ahmad, P. Diversity oriented synthesis of benzimidazole and benzoxa/(thia)zole libraries through polymer-supported hypervalent iodine reagent. J. Comb. Chem. 11, 198–201 (2009).

    Article  CAS  Google Scholar 

  24. Chen, Y.-X., Qian, L.-F., Zhang, W. & Han, B. Efficient aerobic oxidative synthesis of 2-substituted benzoxazoles, benzothiazoles, and benzimidazoles catalyzed by 4-methoxy-TEMPO. Angew. Chem. Int. Ed. 47, 9330–9333 (2008).

    Article  CAS  Google Scholar 

  25. Merchan, F.L., Garin, J., Melendez, E. & Tejero, T. 2-(2-Benzimidazolylamino)benzothiazoles and 2-(2imidazolidinylidenamino)benzothiazoles. Synthesis 1066–1067 (1982).

  26. Garin, J., Melendez, E., Merchan, F.L., Tejel, C. & Tejero, T. A facile synthesis of dimethyl N-aryldithiocarbonimidates and 2-arylaminobenzimidazoles. Synthesis 375–376 (1983).

  27. Cee, V.J. & Downing, N.S. A one-pot method for the synthesis of 2-aminobenzimidazoles and related heterocycles. Tetrahedron Lett. 47, 3747–3750 (2006).

    Article  CAS  Google Scholar 

  28. Boeini, H.Z. & Najafabadi, K.H. Efficient one-step synthesis of benzazoles in aqueous media. Eur. J. Org. Chem. 2009, 4926–4929 (2009).

    Article  Google Scholar 

  29. Ghosh, H., Yella, R., Nath, J. & Patel, B.K. Desulfurization mediated by hypervalent iodine(III): a novel strategy for the construction of heterocycles. Eur. J. Org. Chem. 2008, 6189–6196 (2008).

    Article  Google Scholar 

  30. Lee, H.-G. et al. TBAF-assisted copper-catalyzed N-arylation and benzylation of benzazoles with aryl and benzyl halides under the ligand/base/solvent-free conditions. J. Org. Chem. 74, 5675–5678 (2009).

    Article  CAS  Google Scholar 

  31. Heinelt, U. et al. A convenient method for the synthesis of 2-amino substituted aza-heterocycles from N,N′-disubstituted thioureas using TsCl/NaOH. Tetrahedron 60, 9883–9888 (2004).

    Article  CAS  Google Scholar 

  32. Dallinger, D. & Kappe, C.O. Rapid preparation of the mitotic kinesin Eg5 inhibitor monastrol using controlled microwave-assisted synthesis. Nat. Protoc. 2, 317–321 (2007).

    Article  CAS  Google Scholar 

  33. Dallinger, D. & Kappe, C.O. Automated generation of a dihydropyrimidine compound library using microwave-assisted processing. Nat. Protoc. 2, 1713–1721 (2007).

    Article  CAS  Google Scholar 

  34. Bacsa, B. & Kappe, C.O. Rapid solid-phase synthesis of a calmodulin-binding peptide using controlled microwave irradiation. Nat. Protoc. 2, 2222–2227 (2007).

    Article  CAS  Google Scholar 

  35. Carpenter, R.D., DeBerdt, P.B., Lam, K.S. & Kurth, M.J. Carbodiimide-based benzimidazole library method. J. Comb. Chem. 8, 907–914 (2006).

    Article  CAS  Google Scholar 

  36. Carpenter, R.D. et al. Highly potent, water-soluble benzimidazole antagonist for activated α4β1 integrin. J. Med. Chem. 50, 5863–5867 (2007).

    Article  CAS  Google Scholar 

  37. Hayes, B.B., Gerber, P.C., Griffey, S.S. & Meade, B.J. Contact hypersensitivity to dicyclohexylcarbodiimide and diisopropylcarbodiimide in female B6C3F1 mice. Drug Chem. Toxicol. 1, 195–206 (1998).

    Article  Google Scholar 

  38. Witt, K.L., Tice, R.R., Shelby, M.D., Chhabra, R.S. & Zeiger, E. Induction of micronucleated erythrocytes in rodents by diisopropylcarbodiimide and dicyclohexylcarbodiimide: dependence on exposure protocol. Environ. Mol. Mutagen. 33, 65–74 (1999).

    Article  CAS  Google Scholar 

  39. Carpenter, R.D. et al. Selectively targeting T- and B-cell lymphomas: a benzothiazole antagonist of α4β1 integrin. J. Med. Chem. 52, 14–19 (2009).

    Article  CAS  Google Scholar 

  40. Lunn, W.H.W. & Harper, R.W. Methods for preparing benzimidazo[2,1-b]quinazolin-12-ones and related compounds. J. Heterocycl. Chem. 8, 141–147 (1971).

    Article  CAS  Google Scholar 

  41. Carpenter, R.D., Lam, K.S. & Kurth, M.J. Microwave-mediated heterocyclization to benzimidazo[2,1-b]quinazolin-12(5H)-ones. J. Org. Chem. 72, 284–287 (2007).

    Article  CAS  Google Scholar 

  42. Kappe, C.O. & Dallinger, D. The impact of microwave synthesis on drug discovery. Nat. Rev. Drug Discov. 5, 51–63 (2006).

    Article  CAS  Google Scholar 

  43. Heropoulos, G.A., Cravotto, G., Screttas, C.G. & Steele, B.R. Contrasting chemoselectivities in the ultrasound and microwave assisted bromination reactions of substituted alkylaromatics with N-bromosuccinimide. Tetrahedron Lett. 48, 3247–3250 (2007).

    Article  CAS  Google Scholar 

  44. Carpenter, R.D. et al. Halogenated benzimidazole carboxamides target integrin alpha4 beta1 on T and B cell lymphomas. Cancer Res. 70, 5448–5456 (2010).

    Article  CAS  Google Scholar 

  45. http://www.mrl.ucsb.edu/mrl/centralfacilities/polymer/mconditions_1.html (accessed on July 2010).

  46. Jochims, J.C. Carbodiimides. IV. New synthesis of aromatic isothiocyanates. Chem. Ber. 101, 1746–1752 (1968).

    Article  CAS  Google Scholar 

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Acknowledgements

This research is dedicated to the memory of our former colleague A.D. Mills. We thank the National Cancer Institute (U19CA113298), the National Science Foundation (CHE-0910870) and the National Institute for General Medical Sciences (GM089153) for their generous financial support. R.D.C. thanks the American Chemical Society's Division of Medicinal Chemistry for Predoctoral Fellowship support (sponsored by Sanofi-Aventis); the Howard Hughes Medical Institute for the Med into Grad Fellowship; and The University of California, Davis for the R.B. Miller Graduate Fellowship and for the Outstanding Dissertation Award. NMR spectrometers were in part funded by the National Science Foundation (CHE-0443516 and CHE-9808183).

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R.D.C. codesigned and carried out the experiments, wrote the paper and is the corresponding author. M.J.K. co-designed the experiments and provided senior authorship.

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Correspondence to Richard D Carpenter.

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Carpenter, R., Kurth, M. A rapid and efficient route to benzazole heterocycles. Nat Protoc 5, 1731–1736 (2010). https://doi.org/10.1038/nprot.2010.132

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