Abstract
Nascent polypeptide-associated complex α (αNAC) is reportedly overexpressed in several types of cancers and regulates cell apoptosis under hypoxic conditions in HeLa cells. The aim of our study was to investigate the apoptotic function of αNAC in cancer progression. First, we observed the cellular effects of αNAC depletion. Mouse αNAC was used to restore the protein level and verify the effect. An Annexin V assay, a caspase activity reporter assay, an apoptotic molecular marker, and a colony formation assay were used as markers to investigate the mechanisms of cell death caused by αNAC depletion. The Cancer 10-pathway reporter assay was used to screen downstream pathways. PCR site-directed deletion based on the functional domains of αNAC was used to construct deletion mutants. Those functional domain deletion mutants were used to recover the apoptotic phenotype caused by αNAC depletion. Finally, the role of αNAC in TNF-related apoptosis-inducing ligand (TRAIL) treatment was investigated in vitro. We found that depletion of αNAC in multiple types of cancer cells induce typical apoptotic cell death. This anti-apoptotic function is mediated by the FADD/c-Jun N-terminal kinase pathway. Intact αNAC is required for the direct binding of FADD as well as its anti-apoptosis function. Either αNAC depletion or the deletion of the ubiquitin-associated domain of αNAC sensitizes L929 cancer cells to mTRAIL treatment. Our study revealed a αNAC anti-apoptotic function in multiple types of cancer cells and suggested its potential in cancer therapy.
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Main
Extrinsic apoptosis, which is triggered by the extracellular signals that activate the death receptor (DR) family, is distinguished from intrinsic apoptosis, which is induced by intracellular signals, such as DNA damage, oxidative stress, and nutrient deprivation.1 Extrinsic apoptosis is initiated by the binding of specific ligands, such as tumor necrosis factor α (TNFα), Fas ligand, and TNF-related apoptosis-inducing ligand (TRAIL), to their corresponding receptors called DRs.2 FADD is the major adaptor transmitting apoptotic signals mediated by all known DRs.3
Following the interaction of DRs with cell death ligands and FADD, two cell death pathways are initiated by two different protein groups. The first group includes CD95/Fas, DR4/TRAIL-R1, and DR5/TRAIL-R2, all of which recruit the death-inducing signaling complex composed of FADD and procaspase-8.4 Death-inducing signaling complex facilitates auto-proteolytic cleavage of procaspase-8 and -10, which confers enzymatic activity on the proteins and allows their release.3 Activation of caspase-8 and -10 leads to proteolytic stimulation of the downstream effectors caspase-3, -6, and -7, which can cleave intracellular substrates, such as lamin A, poly-(ADP-ribose) polymerase (PARP), and MEKK1.4, 5 The second group of DRs, including TNFR1, DR3, DR6, and EDAR, recruit TRADD as an adaptor protein that links DRs to TNF receptor-associated factors 2,5, receptor-interacting protein kinase (RIP1 or RIPK1), and cellular inhibitor of apoptosis, forming two signaling complexes called ‘complex I’ and ‘complex II,’ both of which can initiate apoptosis.2, 6, 7, 8
JNK (c-Jun N-terminal kinases) pathway activation has been reported to mediate DR-induced apoptosis in multiple types of cell lines.9, 10, 11, 12, 13 DR/FADD activates JNK by two different pathways. Activated caspase is able to cleave MEKK1 and enhance its kinase activity, further inducing JNK activation via the MAPK (mitogen-activated protein kinases) cascade.5 DR/FADD is also responsible for the recruitment and activation of the kinase ASK1. ASK1 in turn activates the MAPK cascade, resulting in JNK activation.10, 14 Several downstream targets, such as Bim,15, 16 Bad,17 p5318 and C-Jun,19 have been well documented to mediate the apoptotic effect of JNK activation.
NAC (nascent-polypeptide-associated complex) is a hetero-dimeric complex that was identified in higher eukaryotes as a ribosome-associated factor in close proximity to nascent chains.20, 21 NAC containing α and β subunits interacts with unfolded polypeptide chains independent of their amino-acid sequence.21 Recent studies indicate that αNAC has β-subunit-independent functions in development,22 transcriptional factor regulation,23 endoplasmic reticulum stress, and apoptosis.24 Clinical studies have observed elevated αNAC protein levels in multiple types of cancers, such as malignant gliomas,25 breast adenocarcinoma,26 and juvenile myelomonocytic leukemia.27
The functional mechanism of αNAC in cancer progression remains largely unknown. A previous study reported that αNAC interacts with FADD.28 In the present study, αNAC was documented to exhibit an anti-apoptotic function in different cancer cell lines. Furthermore, we demonstrated that the FADD/JNK pathway is the downstream pathway of αNAC and that αNAC is required for oncogenic transformation in normal fibroblast cells.
Results
Depletion of αNAC decreases cancer cell viability
We generated shRNAs to deplete αNAC (Figure 1a) in several cancer cell lines, including PC3 (prostate), H1299 (lung), MCF7 (breast), HCT116 (colon), and Hela (cervix; Figure 1b, Supplementary Figure 1). Surprisingly, αNAC was able to decrease cell viability by over 75% in all cancer cell lines except Hela cells (Figure 3a). To avoid the off-target effect of shRNA, we rescued αNAC protein levels in αNAC-depleted PC3 cells using mouse αNAC (mαNAC; Figure 1c). mαNAC, which exhibits 99% identity with human αNAC (Supplementary Figure 2), was able to recover over 60% of cell viability (Figure 1d). Cell growth curve analyses were performed. αNAC-depleted cells grew slower than control cells, whereas the introduction of exogenous mαNAC into αNAC-depleted cells was able to rescue the growth defect (Figure 1e).
Depletion of αNAC induces caspase-8-dependent apoptosis
To pursue the mechanism of αNAC depletion-mediated cell viability inhibition, Annexin V assays were performed. Less than 5% of control PC3 cells exhibited Annexin V-positive signals, whereas approximately 90% of αNAC-depleted cells exhibited Annexin V-positive signals (Figure 2a). To verify the results of the Annexin V assay, several apoptotic molecular markers were investigated. The levels of caspase-3, -8, and -9 cleavage were much higher in αNAC-depleted PC3 cells compared with the control. PARP, which is a substrate of caspases, was cleaved more frequently in αNAC-depleted cells than in control cells (Figure 2b). Caspase-3 receives signals from caspase-8 or -9 in response to the extrinsic apoptotic pathway or the intrinsic apoptotic pathway, respectively. Thus, we introduced dominant-negative caspase-3, -8, or -9 into control or αNAC-depleted cells and observed caspase-3 activity. In PC3 cells transfected with control empty vector, caspase-3 activity increased twofold. In caspase-3 DN- and caspase-8 DN-transfected cells, caspase-3 activity was inhibited. Interestingly, caspase-9 DN was not able to inhibit caspase-3 activity efficiently (Figure 2c). This result suggests that the apoptotic process was initiated by the extrinsic pathway when αNAC was depleted.
FADD mediates apoptosis under αNAC-depleted conditions
Among the cancer cells we detected, HeLa cells exhibited a much lower cell death response under αNAC depletion compared with the other cells we measured. Over 50% of HeLa cells survived αNAC depletion (Figure 3a). HeLa cells harbors human papillomavirus 18 virus, which express the E6 protein that is able to inhibit p5329 and FADD30 function and protect cells from apoptosis. PC3 and PC3-E6 cells were used to test the hypothesis that E6 was responsible for HeLa cell resistance. Less than 5% of PC3 shαNAC cells survived, whereas over 80% of PC3-E6 shαNAC cells survived (Figure 3b). αNAC depletion efficiently induced cell death in PC3 and H1299 cells, both of which cells are functional p53-null. Therefore, we further investigated the role of FADD role. When FADD was co-depleted with αNAC, approximately 80% of the cells survived (Figure 3c). Caspase-3, -8, and -9 activities were measured in the indicated cells (Figure 3d). The activities of all three caspases were enhanced only in αNAC-depleted cells and inhibited in FADD-depleted cells. PARP and caspase-3 cleavage were decreased in the ‘shαNAC+shFADD’ group as well (Figure 3e). The statistic analysis for p-JNK signal was done (Supplementary Figure 5).
The MAPK/JNK pathway mediates the apoptotic effect of αNAC depletion
To investigate the signal transduction under αNAC depletion conditions, Cancer 10-pathway assays were performed. The activity of two pathways, MAPK/ERK and MAPK/JNK, increased over twofold. In particular, the JNK pathway increased over fivefold (Figure 4a). To block MEKK and JNK activity, two dominant-negative kinase-dead proteins, MEKK-CF-KR and JNK-APF, were introduced into αNAC-depleted or control PC3 cells. Both kinase-dead proteins were able to inhibit JNK phosphorylation and caspase-3 cleavage, and JNK-APF was more potent than MEKK-CF-KR (Figure 4b). The statistic analysis for p-JNK signal was done (Supplementary Figure 6). Colony formation experiments revealed that both kinase-dead proteins were able to rescue the cell viability that was decreased by αNAC depletion and that JNK-APF was more potent than MEKK-CF-KR (Figure 4c). Pathway activities were measured using a transcriptional luciferase reporter assay. JNK-APF was able to inhibit AP1 transcriptional activity over 70%. MEKK-CF-KR was able to inhibit SRE transcriptional activity over 50% (Supplementary Figure 3).
Intact αNAC protein is necessary for anti-apoptotic function
αNAC protein harbors three functional regions related to DNA binding, C-Jun binding, or ubiquitin. Based on the functional regions, we constructed a series of deletion mutants of mαNAC (Figure 5a). The mutants were introduced into αNAC-depleted or control PC3 cells to rescue the apoptotic phenotype. Colony formation experiments revealed that only intact mαNAC was able to rescue cell viability efficiently (Supplementary Figure 4, Figure 5b). Correspondingly, JNK pathway activity could only be inhibited by intact mαNAC under αNAC depletion conditions (Figure 5c). Interestingly, the overexpression of the D180-215 deletion mutant, which is an ubiquitin-associated domain (UBA domain), in PC3 cells decreased viability over 60%, and AP-1 activity increased correspondingly. Cleaved caspase-3 was probed. Only intact mαNAC was able to inhibit caspase-3 cleavage completely (Figure 5d).
The middle and C-terminal regions of αNAC and the N-terminus of FADD are necessary for interaction
Endogenous protein interactions between αNAC and FADD were investigated. A FADD antibody was able to pull down αNAC protein (Figure 6a). Immunofluorescence (IF) revealed co-localization between endogenous αNAC and FADD protein (Figure 6b). To investigate the interaction region in both proteins, immunoprecipitation (IP) was performed in a series of mαNAC or FADD deletion mutants. Flag-tagged full-length mαNAC successfully immunoprecipitated FADD protein. When 89–128 amino acids (aa) or 180–215 aa of mαNAC were deleted, the interaction was interrupted (Figure 6c). Flag-tagged mαNAC was able to precipitate the FADD full-length protein and mutants, with the exception of the 1–153 aa deletion mutant (Figure 6d).
Depletion of mαNAC or the addition of the D185-215 mutant sensitized the murine aneuploid fibrosarcoma cell line L929 to mTRAIL treatment
TRAIL has been used clinically for tumor therapy purposes to induce extrinsic apoptotic cell death. We used L929 cells, which are sensitive to mTRAIL treatment in vitro, as a model. mTRAIL alone induced 45% cell death. The combination of mTRAIL with the D185-215 mutant or shNAC induced more cell death. Interestingly, the D180-215 mutant only induced approximately 40% cell death, whereas 85% cell death was observed when the mutant was combined with mTRAIL treatment (Figures 7a and b).
Discussion
The extrinsic apoptotic pathway has a very important role in cancer progression as well as in cancer therapy. Malignant cells develop several strategies to inhibit the extrinsic apoptotic pathway activity against death signals, such as TNFα, TRAIL, and Fas ligand. Downregulation of DRs is often associated with resistance to drug-induced cell death.31, 32, 33 Downregulation of Fas signaling can be attributed to changes at the genomic, transcriptional, and posttranslational levels. Mutations in the death domain of Fas have been reported in 7% of metastatic melanomas,34 resulting in an abnormal protein that exhibits abrogated associations with FADD and procaspase-8. A more common event is silencing of the Fas receptor promoter.35, 36, 37 Another means of attenuating Fas expression is its selective inhibition from being expressed on the cell surface.38, 39 All of those pathological changes are able to attenuate signal transduction and cellular responses to death signals. Recent studies have revealed that targeting several downstream proteins, such as cellular FLICE-like inhibitory protein40, 41 and caspase-8,42 is able to overcome the drug resistance caused by the downregulation of DRs. Our study provides evidence that the depletion of αNAC potently induces apoptotic cell death in multiple cancer cell lines but not in normal fibroblast cells. αNAC is a potential candidate for cancer therapy.
αNAC harbors a UBA domain in its extreme C-terminus. The UBA domain is a small structural domain in proteins that is characterized by a three-helix bundle and is typically associated with the ubiquitin pathway. Binding of the long-chain ubiquitin of the proteins to UBA proteins is able to promote their degradation.43 Some proteins harboring UBA domains have been identified in the ubiquitin-associated proteasome pathway, such as nuclear factor-κB essential modulator, R23A, Dsk2, and NBR1.44, 45, 46, 47 All of these proteins belong to class 1, 2, or 4 UBAs. Class 3, to which αNAC belongs, exhibits no demonstrable binding affinity with long-chain ubiquitin in yeast (Egd2 is homologue of αNAC in yeast). We do not find any evidence to support that αNAC regulates FADD by regulating protein stability because the depletion or overexpression of αNAC did not significantly change the FADD level. Therefore, it would be interesting to investigate the binding affinity between FADD and caspase-8 or RIP1 with or without αNAC.
Interestingly, the D180-215 mutant, deleted with UBA domain, activates AP1 pathway and inhibits cell viability when overexpressed in PC3 cells only. D180-215 mutant also sensitized mTRAIL-induced L929 cell apoptosis in vitro. Considering those effect is consistent with αNAC depletion, we propose UBA domain has an important role in αNAC anti-apoptotic function. Further investigation focusing on this domain would be helpful to clarify the mechanism.
Depletion of FADD completely blocked JNK phosphorylation (Figure 3e), suggesting that JNK activation is the downstream of FADD. Depletion of FADD efficiently recovers cell apoptosis induced by αNAC depletion. Overexpression of JNK APF in αNAC-depleted cells was able to recover cell viability to 40% (Figure 4c), although it blocked endogenous JNK activity over 70% (Supplementary Figure 3). Therefore, the JNK pathway is the major but not the only pathway to mediate the αNAC/FADD effect. The signal transduction from FADD to JNK has two potential pathways, correspondingly mediated by MEKK14 or ASK.14 When endogenous MEKK1 was inhibited by MEKK-CF-KR, cell viability decreased to approximately 20%. Thus, MEKK1 is not the only mediator of signal transduction from FADD to JNK (Supplementary Figure 5).
Caspases response to apoptotic signal by two ways. For a short-time stimulation, caspases were cleaved and activated. For sustained stress, JNK and other pathways promote caspase gene transcription and elevate those protein levels.48 In this study, we used lentivirus to introduce siRNA against αNAC into cells. It takes about 3 days. We found not only caspase cleavage but also caspase protein level elevation in αNAC-depleted cells. It is consistent with the JNK activation we found.
When cell undergo extrinsic apoptosis, in so-called type 1 cells, proteolytic activation of caspases-3 by caspase-8 suffices for efficient apoptosis induction. In so-called type 2 cells, killing requires amplification of the caspase cascade. This can be achieved through caspase-8-mediated proteolytic activation of the pro-apoptotic Bcl-2 homology domain (BH) 3-only protein BH3-interacting domain death agonist (Bid), which then causes mitochondrial outer membrane permeabilization.49 Further investigation is required to clarify BID’s role when αNAC was depleted.
Our study revealed that αNAC, a nascent peptide-associated protein, exhibits an anti-apoptotic function independent of the NAC complex in cancer cells. The anti-apoptotic mechanism of αNAC was concluded as a diagram (Figure 8). αNAC is a potential therapy target, and further study on the mechanism of αNAC regulation of FADD is necessary.
Materials and Methods
PCR and cloning
Oligonucleotides were synthesized as per protocol by Invitrogen (Grand Island, NY, USA) and are listed in Supplementary Table 1. C-MYC,50 myr-AKT,51 HRasV12 (Cat. 1768), MEKK1-CF-KR,52 JNK-APF53 caspase-3 DN (dominant negative),54 caspase-8 DN,55 and caspase-9 DN55 were purchased from Addgene (http://www.addgene.org) and were sub-cloned into corresponding lentiviral expression plasmids. All the details of those plasmids are available in the references correspondingly. PCRs were performed with KOD Taq polymerase (TOYOBO, Novi, MI, USA) and Mastercycler nexus (Eppendorf, Hamburg, Germany).
Cell culture, transfection, and reagents
PC3, MCF7, H1299, MDA-MB-231, U2OS, and 293T cells were purchased from the American Type Culture Collection and were maintained in their corresponding media as standard protocol. PC3-E6 cells were created and maintained following the published MCF7-E6 building methods.56 All cell culture reagents were purchased from Gibco (New York, NY, USA). Mouse TRAIL (Cat. SRP3237) and other reagents were purchased from Sigma (St. Louis, MO, USA) unless otherwise indicated. Transfections were performed with Lipofectamine 2000 (Invitrogen) according to the standard instructions. In each experiment, the amounts of the transfected plasmids were consistent, and an empty vector was used to compensate for any remaining amount. Each experiment was repeated three times.
Cancer 10-pathway reporter arrays
The Cancer 10-pathway Reporter kit (CCA-001L) was purchased from SABiosciences (Frederick, MA, USA). The screening process was performed following the standard manual. In brief, MCF7 cells were seeded into 96-well plates at a density of 1 × 104 cells per well. Reverse transfections were performed when the cells were seeded. After 48 h, the cells were harvested and subjected to dual luciferase analysis, which was performed using the Dual-Luciferase Reporter Assay System (E1960, Promega, Madison, WI, USA).
Western blot analysis, IP, IF, and antibodies
Western blot analysis, IPs, and IF were performed according to the described procedures.50 αNAC (sc-87324, 1:500), BCL2 (sc-492, 1:1000), MYC (SC-40, 1:2000), HRas (sc-34, 1:500), JNK2 (sc-827, 1:1000), FADD (sc-5559, 1:500), HPV16 E6 (sc-1584, 1:1000), GFP (sc-390394, 1:2000), and V5-Probe (sc-81594, 1:500) antibodies and Protein A/G PLUS agarose beads (SC-2003) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Flag (F4042, 1:5000, mouse), Flag (F2555, 1:1000, rabbit), and actin (A4700, 1:5000) antibodies and Anti-FLAG M2 Magnetic Beads (M8823) were purchased from Sigma. PARP (9532, 1:500), cleaved caspase-3 (9664, 1:500), cleaved caspase-8 (9496, 1:500), cleaved caspase-9 (9505, 1:500), and p-JNK (4668, 1:1000) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). The goat anti-mouse (SC-2005, 1:500) and goat anti-rabbit (SC-2004, 1:500) secondary antibodies were purchased from Santa Cruz Biotechnology. The secondary antibodies used for IF were purchased from Invitrogen, including Alexa Fluor 594 (A11020, 1:500) and Alexa Fluor 488 (A11034, 1:500). The blot images were taken using a ChemiDoc XRS+ system (Bio-Rad, Hercules, CA, USA). IF images were taken by microscopy (CX41-32RFL, OLYMPUS). IP was performed following a previous protocol.52
Virus packaging and infection
The pLKO1 plasmid, pLenti entry-destination system,57 and helper vectors, VSVG and delta8.2, were purchased from Addgene. Virus packaging and target cell infection were performed following standard protocols from Addgene. Stable cell lines were created by selection with 1 μg/ml puromycin (P9620, Sigma) for 6 days.
Annexin V assay
The Annexin V-FITC Apoptosis Detection Kit was purchased from Sigma (APOAF-50TST). Cells were seeded on sterile cover slides in 35 mm dishes. The following day, cells were washed with PBS twice and incubated with the Annexin V-FITC working solution for 30 min. Slides were placed cell-side down on slides, and positively stained cells were counted under a microscope.
Caspase enzyme activity assay
Three caspase activity assay kits, caspase-Glo3/7 (G8090), caspase-Glo8 (G8200), and caspase-Glo9 (G8210), were purchased from Promega. Experiments were performed according to the manufacturer’s manual.
Colony formation assay
Cells were trypsinized and suspended in culture medium. After counting, cells were diluted to 50 cells/ml. Approximately 2 ml of cell suspension (approximately 100 cells) was seeded into each 60 mm dish. The medium was changed every 1 or 2 days. After 2 weeks under normal conditions, cells were fixed in 4% formaldehyde for 10 min. After two washes with PBS, 0.05% crystal violet was added to the dishes. After 15 min, crystal violet was removed, and the cells were washed twice with PBS (upper panel). Colonies were counted using ImageJ software (version 1.43; http://rsbweb.nih.gov/ij/download.html).
Statistical analysis and software
All experiments were repeated three times. For each histogram, the average value and error bar were calculated from three independent experiments. GraphPad Prism 5 was used to analyze the data and create histograms. One-way ANOVA was used to assess statistical significance for certain data. A double asterisk (**) indicates P<0.01, and a single asterisk (*) indicates P<0.05.
Abbreviations
- DR:
-
death receptor
- TNF:
-
tumor necrosis factor
- TRAIL:
-
TNF-related apoptosis-inducing ligand
- PRAP:
-
poly-(ADP-ribose) polymerase
- αNAC:
-
nascent polypeptide-associated complex α
- mαNAC:
-
mouse αNAC
- UBA:
-
ubiquitin-associated domain
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Acknowledgements
This work was supported by grant 81201240 from National Natural Science Foundation of China (W Zeng), National Natural Science Foundation of China 81225013 for Distinguished Young Scholar (X Chen), and grant 81301986 from National Natural Science Foundation of China (M Qi).
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Zeng, W., Zhang, J., Qi, M. et al. αNAC inhibition of the FADD-JNK axis plays anti-apoptotic role in multiple cancer cells. Cell Death Dis 5, e1282 (2014). https://doi.org/10.1038/cddis.2014.192
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DOI: https://doi.org/10.1038/cddis.2014.192