Featured
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Original Article
| Open AccessGeobiological feedbacks and the evolution of thermoacidophiles
- Daniel R Colman
- , Saroj Poudel
- & Eric S Boyd
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Short Communication |
Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates
- Jürgen F H Strassert
- , Anna Karnkowska
- & Patrick J Keeling
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Original Article |
Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs
- Bram Flahou
- , Mirko Rossi
- & Freddy Haesebrouck
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Original Article
| Open AccessFeathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
- Denis Warshan
- , Josh L Espinoza
- & Ulla Rasmussen
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Mini Review |
The growing tree of Archaea: new perspectives on their diversity, evolution and ecology
- Panagiotis S Adam
- , Guillaume Borrel
- & Simonetta Gribaldo
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Mini Review |
Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota
- Paola Bonfante
- & Alessandro Desirò
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Short Communication |
Spontaneous mutations of a model heterotrophic marine bacterium
- Ying Sun
- , Kate E Powell
- & Haiwei Luo
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Original Article
| Open AccessGenomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen
- Francisca HID Segers
- , Lucie Kešnerová
- & Philipp Engel
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Short Communication |
Host specificity of Symbiodinium variants revealed by an ITS2 metahaplotype approach
- Edward G Smith
- , Remi N Ketchum
- & John A Burt
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Original Article
| Open AccessPhylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats
- Meinhard Simon
- , Carmen Scheuner
- & Markus Göker
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Original Article |
Evaluating community–environment relationships along fine to broad taxonomic resolutions reveals evolutionary forces underlying community assembly
- Hsiao-Pei Lu
- , Yi-Chun Yeh
- & Chih-hao Hsieh
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Original Article
| Open AccessBiofilm plasmids with a rhamnose operon are widely distributed determinants of the ‘swim-or-stick’ lifestyle in roseobacters
- Victoria Michael
- , Oliver Frank
- & Jörn Petersen
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Original Article |
Global biogeography of Prochlorococcus genome diversity in the surface ocean
- Alyssa G Kent
- , Chris L Dupont
- & Adam C Martiny
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Original Article
| Open AccessComparative genomics reveals new evolutionary and ecological patterns of selenium utilization in bacteria
- Ting Peng
- , Jie Lin
- & Yan Zhang
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Original Article
| Open AccessEvolutionary distinctiveness of fatty acid and polyketide synthesis in eukaryotes
- Gurjeet S Kohli
- , Uwe John
- & Shauna A Murray
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Original Article |
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
- Chris Greening
- , Ambarish Biswas
- & Sergio E Morales
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Original Article
| Open AccessRapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections
- Bethany L Dearlove
- , Alison J Cody
- & Samuel K Sheppard
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Original Article |
Evolutionary transition in symbiotic syndromes enabled diversification of phytophagous insects on an imbalanced diet
- Sailendharan Sudakaran
- , Franziska Retz
- & Martin Kaltenpoth
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Original Article
| Open AccessNo evidence of inhibition of horizontal gene transfer by CRISPR–Cas on evolutionary timescales
- Uri Gophna
- , David M Kristensen
- & Eugene V Koonin
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Original Article |
Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains
- Yumiko Miyamoto
- , Atsushi Sakai
- & Kazuhide Nara
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Original Article
| Open AccessA phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
- Jiachao Zhang
- , Zhuang Guo
- & Heping Zhang
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Original Article
| Open AccessPhylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases
- Albert Leopold Müller
- , Kasper Urup Kjeldsen
- & Alexander Loy
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Original Article
| Open AccessIntegrating phylogeny, geographic niche partitioning and secondary metabolite synthesis in bloom-forming Planktothrix
- Rainer Kurmayer
- , Judith F Blom
- & Jakob Pernthaler
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Original Article |
Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance
- Suleyman Yildirim
- , Carl J Yeoman
- & Rebecca M Stumpf
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Original Article |
Comparative analysis of the interaction between habitat and growth form in diatoms
- Teofil Nakov
- , Matt Ashworth
- & Edward C Theriot
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Original Article |
Genomic insights into the uncultured genus ‘Candidatus Magnetobacterium’ in the phylum Nitrospirae
- Wei Lin
- , Aihua Deng
- & Yongxin Pan
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Original Article |
Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning
- Francisco Dini-Andreote
- , Michele de Cássia Pereira e Silva
- & Joana Falcão Salles
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Original Article |
Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients
- Yan Li
- , Jinzhi He
- & Xuedong Zhou
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Original Article |
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
- Kelly C Wrighton
- , Cindy J Castelle
- & Jillian F Banfield
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Commentary |
‘Geoarchaeote NAG1’ is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum
- Lionel Guy
- , Anja Spang
- & Thijs J G Ettema
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Original Article |
Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
- J Cameron Thrash
- , Ben Temperton
- & Stephan J Giovannoni
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Original Article
| Open AccessThe quest for a unified view of bacterial land colonization
- Hao Wu
- , Yongjun Fang
- & Zhang Zhang
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Original Article |
Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters
- Haiwei Luo
- , Brandon K Swan
- & Mary Ann Moran
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Original Article |
Host-specificity among abundant and rare taxa in the sponge microbiome
- Julie Reveillaud
- , Loïs Maignien
- & Ann Vanreusel
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Original Article |
Diversity and methane oxidation of active epibiotic methanotrophs on live Shinkaia crosnieri
- Tomo-o Watsuji
- , Asami Yamamoto
- & Ken Takai
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Short Communication |
Single-cell genomics shedding light on marine Thaumarchaeota diversification
- Haiwei Luo
- , Bradley B Tolar
- & James T Hollibaugh
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Original Article |
Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park
- Jacob P Beam
- , Zackary J Jay
- & William P Inskeep
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Original Article |
Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles
- Ramon Massana
- , Javier del Campo
- & Ramiro Logares
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Original Article
| Open AccessGenetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
- Jun Meng
- , Jun Xu
- & Fengping Wang
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Original Article |
Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits
- David Goudenège
- , Yannick Labreuche
- & Frédérique Le Roux
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Original Article |
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
- Kevin L Vergin
- , Bánk Beszteri
- & Stephen J Giovannoni
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Original Article |
Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
- Jianjun Wang
- , Ji Shen
- & Enlou Zhang
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Commentary |
Waiting for the human intestinal Eukaryotome
- Lee O'Brien Andersen
- , Henrik Vedel Nielsen
- & Christen Rune Stensvold
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Original Article |
Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress
- Lu Fan
- , Michael Liu
- & Torsten Thomas
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Original Article |
Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens
- Yeshi Yin
- , Yu Wang
- & Xin Wang
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Original Article |
Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities
- Donovan H Parks
- & Robert G Beiko
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Original Article
| Open AccessPhylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat
- J Kirk Harris
- , J Gregory Caporaso
- & Norman R Pace
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Original Article |
Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals
- Adrienne M S Correa
- , Rory M Welsh
- & Rebecca L Vega Thurber
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Original Article
| Open AccessTargeted recovery of novel phylogenetic diversity from next-generation sequence data
- Michael D J Lynch
- , Andrea K Bartram
- & Josh D Neufeld