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Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria
- Peter Erdmann Dougherty
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- & Lars Hestbjerg Hansen
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Article
| Open Access
Filamentous virus-like particles are present in coral dinoflagellates across genera and ocean basins
- Lauren I. Howe-Kerr
- , Anna M. Knochel
- & Adrienne M. S. Correa
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Article
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Coordinated proteome change precedes cell lysis and death in a mat-forming cyanobacterium
- Jackie Zorz
- , Alexandre J. Paquette
- & Agasteswar Vadlamani
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Perspective
| Open Access
Relationships between intrinsic population growth rate, carrying capacity and metabolism in microbial populations
- Dustin J. Marshall
- , Hayley E. Cameron
- & Michel Loreau
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Article
| Open Access
Predation-resistant Pseudomonas bacteria engage in symbiont-like behavior with the social amoeba Dictyostelium discoideum
- Margaret I. Steele
- , Jessica M. Peiser
- & David C. Queller
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Article
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Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium
- Elizabeth A. McDaniel
- , Matthew Scarborough
- & Ryan M. Ziels
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Article
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Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments
- Dennis Alexander Tebbe
- , Charlotte Gruender
- & Hendrik Schäfer
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Phylogenetic and ecophysiological novelty of subsurface mercury methylators in mangrove sediments
- Songfeng Liu
- , Ruiwen Hu
- & Cheng Wang
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Article
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Genomic and transcriptomic insights into complex virus–prokaryote interactions in marine biofilms
- Kun Zhou
- , Tin Yan Wong
- & Pei-Yuan Qian
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Identification and cultivation of anaerobic bacterial scavengers of dead cells
- Yuga Hirakata
- , Ran Mei
- & Masaru K. Nobu
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Article
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Rapid growth rate responses of terrestrial bacteria to field warming on the Antarctic Peninsula
- Alicia M. Purcell
- , Paul Dijkstra
- & Natasja van Gestel
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Article
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Mutualism reduces the severity of gene disruptions in predictable ways across microbial communities
- Jonathan N. V. Martinson
- , Jeremy M. Chacón
- & William R. Harcombe
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Review Article
| Open Access
Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics
- Monica Thukral
- , Andrew E. Allen
- & Daniel Petras
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Article
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Community composition and physiological plasticity control microbial carbon storage across natural and experimental soil fertility gradients
- Orpheus M. Butler
- , Stefano Manzoni
- & Charles R. Warren
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Comment
| Open Access
Microbial volatiles mediate bacterial evolutionary dynamics
- Muhammad Syamsu Rizaludin
- , Paolina Garbeva
- & Jie Hu
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Land use conversion increases network complexity and stability of soil microbial communities in a temperate grassland
- Carolyn R. Cornell
- , Ya Zhang
- & Jizhong Zhou
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Article
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Nutrient supplementation by genome-eroded Burkholderia symbionts of scale insects
- Anna Michalik
- , Eugen Bauer
- & Martin Kaltenpoth
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Coevolution between marine Aeromonas and phages reveals temporal trade-off patterns of phage resistance and host population fitness
- Zhenhe Xu
- , Zihan Ding
- & Qin Liu
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Article
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High intensity perturbations induce an abrupt shift in soil microbial state
- Irene Cordero
- , Ainara Leizeaga
- & Richard D. Bardgett
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Microbial controls over soil priming effects under chronic nitrogen and phosphorus additions in subtropical forests
- Jian Li
- , Zhan-Feng Liu
- & Yong-Guan Zhu
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Article
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Resource partitioning and amino acid assimilation in a terrestrial geothermal spring
- Dengxun Lai
- , Brian P. Hedlund
- & Bruce A. Hungate
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Humic acid-dependent respiratory growth of Methanosarcina acetivorans involves pyrroloquinoline quinone
- Yuanxu Song
- , Rui Huang
- & Zhen Yan
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Article
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Two-tiered mutualism improves survival and competitiveness of cross-feeding soil bacteria
- Zhan-Biao Ge
- , Zhi-Qiang Zhai
- & Peng Wang
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Dispersal, habitat filtering, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography
- Anneliek M. ter Horst
- , Jane D. Fudyma
- & Joanne B. Emerson
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Article
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Single cell dynamics and nitrogen transformations in the chain forming diatom Chaetoceros affinis
- Rickard Stenow
- , Elizabeth K. Robertson
- & Helle Ploug
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Article
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Frequency of change determines effectiveness of microbial response strategies
- Shengjie Li
- , Damon Mosier
- & Muhe Diao
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Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities
- Pieter Candry
- , Grayson L. Chadwick
- & Korneel Rabaey
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Nitrogen fixation and diazotroph diversity in groundwater systems
- Xiaohan Liu
- , Ping Li
- & Shuh-Ji Kao
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Article
| Open Access
Host and microbiome jointly contribute to environmental adaptation
- Carola Petersen
- , Inga K. Hamerich
- & Hinrich Schulenburg
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Article
| Open Access
Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis
- Bin Liu
- , Daniel Rios Garza
- & Karoline Faust
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Functional conservation of microbial communities determines composition predictability in anaerobic digestion
- Qiang Lin
- , Lingjuan Li
- & Xiangzhen Li
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Article
| Open Access
Impact of transient acquired hypermutability on the inter- and intra-species competitiveness of Pseudomonas aeruginosa
- Yue Yuan On
- , Wendy Figueroa
- & Martin Welch
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Perspective
| Open Access
Impact of intraspecific variation in insect microbiomes on host phenotype and evolution
- Claudia Lange
- , Stéphane Boyer
- & Martin Kaltenpoth
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Microbial gene expression in Guaymas Basin subsurface sediments responds to hydrothermal stress and energy limitation
- Paraskevi Mara
- , Ying-Li Zhou
- & Virginia Edgcomb
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Article
| Open Access
Hydrogenotrophic methanogenesis is the key process in the obligately syntrophic consortium of the anaerobic ameba Pelomyxa schiedti
- Sebastian C. Treitli
- , Pavla Hanousková
- & Vladimír Hampl
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Article
| Open Access
Palmitoleic acid as a coordinating molecule between the invasive pinewood nematode and its newly associated fungi
- Jing Ning
- , Xiaoting Gu
- & Lilin Zhao
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Perspective
| Open Access
Rethinking CSR theory to incorporate microbial metabolic diversity and foraging traits
- J. L. Wood
- , A. A. Malik
- & A. E. Franks
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Article
| Open Access
Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil
- Jun Zhao
- , Laibin Huang
- & Willm Martens-Habbena
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Article
| Open Access
Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin
- Diana P. Bojanova
- , Valerie Y. De Anda
- & Jan P. Amend
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Article
| Open Access
Motility mediates satellite formation in confined biofilms
- Mireia Cordero
- , Namiko Mitarai
- & Liselotte Jauffred
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Candidatus Nemesobacterales is a sponge-specific clade of the candidate phylum Desulfobacterota adapted to a symbiotic lifestyle
- Asimenia Gavriilidou
- , Burak Avcı
- & Detmer Sipkema
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Article
| Open Access
Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species
- Yongyi Peng
- , Zijian Lu
- & Xiyang Dong
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Article
| Open Access
Interspecific competition can drive plasmid loss from a focal species in a microbial community
- David Sünderhauf
- , Uli Klümper
- & Stineke van Houte
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Comment
| Open Access
Diversification during cross-kingdom microbial experimental evolution
Experimental evolution in a laboratory helps researchers to understand the genetic and phenotypic background of adaptation under a particular condition. Simultaneously, the simplified environment that represents certain aspects of a complex natural niche permits the dissection of relevant parameters behind the selection, including temperature, oxygen availability, nutrients, and biotic factors. The presence of other microorganisms or a host has a major influence on microbial evolution that often differs from the adaptation paths observed in response to abiotic conditions. In the current issue of the ISME Journal, Cosetta and colleagues reveal how cross-kingdom interaction representing the cheese microbiome succession promotes distinct evolution of the food- and animal-associated bacterium, Staphylococcus xylosus. The authors also identified a global regulator-dependent adaption that leads to evolved derivatives exhibiting reduced pigment production and colony morphologies in addition to altered differentiation phenotypes that potentially contribute to increased fitness.
- Ákos T. Kovács
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Bacterial–fungal interactions promote parallel evolution of global transcriptional regulators in a widespread Staphylococcus species
- Casey M. Cosetta
- , Brittany Niccum
- & Benjamin E. Wolfe
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Article
| Open Access
Virus–pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal
- Tianyi Chen
- , Tang Liu
- & Jinren Ni
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Article
| Open Access
Global scale phylogeography of functional traits and microdiversity in Prochlorococcus
- Lucas J. Ustick
- , Alyse A. Larkin
- & Adam C. Martiny
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Mcr-dependent methanogenesis in Archaeoglobaceae enriched from a terrestrial hot spring
- Steffen Buessecker
- , Grayson L. Chadwick
- & Anne E. Dekas
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Article
| Open Access
Novel pelagiphage isolate Polarivirus skadi is a polar specialist that dominates SAR11-associated bacteriophage communities at high latitudes
- Holger H. Buchholz
- , Luis M. Bolaños
- & Ben Temperton
Endosymbionts modulate virus effects on aphid-plant interactions