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Original Article |
Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
- J Cameron Thrash
- , Ben Temperton
- & Stephan J Giovannoni
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Original Article |
Strain-level genomic variation in natural populations of Lebetimonas from an erupting deep-sea volcano
- Julie L Meyer
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Original Article |
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community
- Mallory Embree
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- & Karsten Zengler
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Original Article
| Open AccessPositive epistasis between co-infecting plasmids promotes plasmid survival in bacterial populations
- Alvaro San Millan
- , Karl Heilbron
- & R Craig MacLean
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Original Article |
The (d)evolution of methanotrophy in the Beijerinckiaceae—a comparative genomics analysis
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Original Article |
Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae
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Original Article |
Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
- Adam R Rivers
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- & Mary Ann Moran
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Original Article |
Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
- Jason J Flowers
- , Shaomei He
- & Katherine D McMahon
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Original Article |
Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants
- Thomas R Turner
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- & Philip S Poole
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Original Article |
The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities
- Yong-Jin Lee
- , Joy D van Nostrand
- & Jizhong Zhou
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Original Article |
Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling
- Brett J Baker
- , Cody S Sheik
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Short Communication |
Chytrid epidemics may increase genetic diversity of a diatom spring-bloom
- Alena S Gsell
- , Lisette N de Senerpont Domis
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Original Article |
Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent
- Libusha Kelly
- , Huiming Ding
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Original Article
| Open AccessMetatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts
- J G Sanders
- , R A Beinart
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Original Article |
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
- Kevin L Vergin
- , Bánk Beszteri
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Original Article |
Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes
- Amy E Zimmerman
- , Adam C Martiny
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Original Article |
Ecology of marine Bacteroidetes: a comparative genomics approach
- Beatriz Fernández-Gómez
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Original Article |
Phylogenetic conservatism of functional traits in microorganisms
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Original Article |
Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics
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Original Article |
By their genes ye shall know them: genomic signatures of predatory bacteria
- Zohar Pasternak
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Original Article |
Gut bacteria–host metabolic interplay during conventionalisation of the mouse germfree colon
- Sahar El Aidy
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Original Article
| Open AccessA small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus
- Lisa C Crossman
- , Huan Chen
- & O Colin Stine
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Commentary |
Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2
- Rafael Silva-Rocha
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Original Article |
Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents
- Martin J Blaser
- , Maria G Dominguez-Bello
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Original Article |
Taming the smallest predators of the oceans
- Javier del Campo
- , Fabrice Not
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Commentary |
Describing microbial communities and performing global comparisons in the ‘omic era
- Tom O Delmont
- , Pascal Simonet
- & Timothy M Vogel
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Original Article
| Open AccessMetagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
- Olivia U Mason
- , Terry C Hazen
- & Janet K Jansson
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Original Article |
Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life
- Sebastian Thole
- , Daniela Kalhoefer
- & Thorsten Brinkhoff
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Original Article |
Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume
- Brett J Baker
- , Ryan A Lesniewski
- & Gregory J Dick
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Original Article |
Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome
- Eamonn P Culligan
- , Roy D Sleator
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Original Article |
‘Candidatus Thermochlorobacter aerophilum:’ an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics
- Zhenfeng Liu
- , Christian G Klatt
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Original Article |
Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions
- Gregor Gierga
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Original Article |
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
- Erwin G Zoetendal
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Original Article |
Proteus mirabilis interkingdom swarming signals attract blow flies
- Qun Ma
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Original Article |
Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton
- Elizabeth A Ottesen
- , Roman Marin III
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Original Article |
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat
- Zhenfeng Liu
- , Christian G Klatt
- & Donald A Bryant
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Original Article |
Transcriptional response of the photoheterotrophic marine bacterium Dinoroseobacter shibae to changing light regimes
- Jürgen Tomasch
- , Regina Gohl
- & Irene Wagner-Döbler
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Original Article |
A novel fungal family of oligopeptide transporters identified by functional metatranscriptomics of soil eukaryotes
- Coralie Damon
- , Laurent Vallon
- & Roland Marmeisse
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Original Article |
Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger
- Francesca Mela
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Original Article
| Open AccessCommunity profiling and gene expression of fungal assimilatory nitrate reductases in agricultural soil
- Markus Gorfer
- , Marzena Blumhoff
- & Joseph Strauss
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Original Article |
Linking phytoplankton community composition to seasonal changes in f-ratio
- Bess B Ward
- , Andrew P Rees
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Original Article |
Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium
- Marlene M Jensen
- , Phyllis Lam
- & Marcel MM Kuypers
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Original Article |
Metatranscriptomic analysis of extremely halophilic viral communities
- Fernando Santos
- , Mercedes Moreno-Paz
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Original Article |
Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium
- Hiroyuki Kimura
- , Curtis R Young
- & Edward F DeLong
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Original Article |
IS5 inserts upstream of the master motility operon flhDC in a quasi-Lamarckian way
- Xiaoxue Wang
- & Thomas K Wood
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Original Article
| Open AccessMarine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays
- Hosam Elsaied
- , Hatch W Stokes
- & Akihiko Maruyama
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Original Article |
Nitrogen fixation and nitrogenase (nifH) expression in tropical waters of the eastern North Atlantic
- Kendra A Turk
- , Andrew P Rees
- & Jack Gilbert
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Original Article |
Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors
- Paolina Garbeva
- , Mark W Silby
- & Wietse de Boer
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Original Article |
Sequence variability of the pattern recognition receptor Mermaid mediates specificity of marine nematode symbioses
- Silvia Bulgheresi
- , Harald R Gruber-Vodicka
- & Joerg A Ott
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