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Original Article |
Significant variation in transformation frequency in Streptococcus pneumoniae
- Benjamin A Evans
- & Daniel E Rozen
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Original Article |
Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress
- Lu Fan
- , Michael Liu
- & Torsten Thomas
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Original Article |
Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens
- Yeshi Yin
- , Yu Wang
- & Xin Wang
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Original Article |
Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities
- Donovan H Parks
- & Robert G Beiko
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Original Article
| Open AccessPhylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat
- J Kirk Harris
- , J Gregory Caporaso
- & Norman R Pace
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Original Article |
Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals
- Adrienne M S Correa
- , Rory M Welsh
- & Rebecca L Vega Thurber
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Original Article
| Open AccessTargeted recovery of novel phylogenetic diversity from next-generation sequence data
- Michael D J Lynch
- , Andrea K Bartram
- & Josh D Neufeld
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Original Article |
Influence of geogenic factors on microbial communities in metallogenic Australian soils
- Frank Reith
- , Joel Brugger
- & Steven A Wakelin
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Original Article |
Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
- Kyoko Kubo
- , Karen G Lloyd
- & Katrin Knittel
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Original Article |
Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
- Ramiro Logares
- , Stephane Audic
- & Ramon Massana
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Original Article |
Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake
- Jean-Christophe Auguet
- , Xavier Triadó-Margarit
- & Emilio O Casamayor
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Original Article |
Stochastic and deterministic assembly processes in subsurface microbial communities
- James C Stegen
- , Xueju Lin
- & James K Fredrickson
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Original Article |
‘Candidatus Thermochlorobacter aerophilum:’ an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics
- Zhenfeng Liu
- , Christian G Klatt
- & Donald A Bryant
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Original Article |
Molecular evidence of iron limitation and availability in the global diazotroph Trichodesmium
- Phoebe Dreux Chappell
- , James W Moffett
- & Eric A Webb
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Original Article |
Metagenomic analysis of a stable trichloroethene-degrading microbial community
- Vanessa L Brisson
- , Kimberlee A West
- & Lisa Alvarez-Cohen
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Original Article
| Open AccessExpression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
- Fabian Staubach
- , Sven Künzel
- & Jill M Johnsen
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Short Communication |
First evidence for the existence of pennate diatom viruses
- Yuji Tomaru
- , Kensuke Toyoda
- & Keizo Nagasaki
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Original Article |
Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic
- Moudjahidou Demba Diallo
- , Caroline L Monteil
- & Cindy E Morris
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Original Article
| Open AccessUnraveling assembly of stream biofilm communities
- Katharina Besemer
- , Hannes Peter
- & Tom J Battin
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Original Article |
Population genomics of Sinorhizobium medicae based on low-coverage sequencing of sympatric isolates
- Xavier Bailly
- , Elisa Giuntini
- & J Peter W Young
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Original Article |
Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria
- Fernanda Abreu
- , Mauricio E Cantão
- & Ulysses Lins
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Original Article |
Using experimental evolution to explore natural patterns between bacterial motility and resistance to bacteriophages
- Britt Koskella
- , Tiffany B Taylor
- & Angus Buckling
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Original Article |
Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing
- Pei-Ying Hong
- , Emily Wheeler
- & Roderick I Mackie
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Original Article |
IS5 inserts upstream of the master motility operon flhDC in a quasi-Lamarckian way
- Xiaoxue Wang
- & Thomas K Wood
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Original Article |
RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture
- Adam Z Rosenthal
- , Eric G Matson
- & Jared R Leadbetter
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Original Article |
Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment
- Hiroyuki Ogata
- , Jessica Ray
- & Jean-Michel Claverie
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Short Communication
| Open AccessHigh local substrate availability stabilizes a cooperative trait
- Herwig Bachmann
- , Douwe Molenaar
- & Johan ET van Hylckama Vlieg
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Original Article |
A novel clade of Prochlorococcus found in high nutrient low chlorophyll waters in the South and Equatorial Pacific Ocean
- Nyree J West
- , Philippe Lebaron
- & Marcelino T Suzuki
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Original Article |
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice
- Kelly S Swanson
- , Scot E Dowd
- & George C Fahey Jr
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Original Article |
An ancient but promiscuous host–symbiont association between Burkholderia gut symbionts and their heteropteran hosts
- Yoshitomo Kikuchi
- , Takahiro Hosokawa
- & Takema Fukatsu
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Original Article |
Patterns of fungal diversity and composition along a salinity gradient
- Devon J Mohamed
- & Jennifer BH Martiny
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Original Article |
Ecological succession in long-term experimentally evolved biofilms produces synergistic communities
- Steffen R Poltak
- & Vaughn S Cooper
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Original Article |
Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach
- Monika Sekelja
- , Ingunn Berget
- & Knut Rudi
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Original Article |
Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution
- V P Edgcomb
- , S A Breglia
- & J M Bernhard
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Original Article |
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
- Alan W Walker
- , Jennifer Ince
- & Harry J Flint
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Original Article |
Microbial community structure across the tree of life in the extreme Río Tinto
- Linda A Amaral-Zettler
- , Erik R Zettler
- & Ricardo Amils
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Original Article |
Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis
- Adam M Guss
- , Guus Roeselers
- & Colleen M Cavanaugh
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Original Article |
Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean
- Ramon Massana
- , Massimo Pernice
- & Javier del Campo
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Original Article |
Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1
- Melissa Beth Duhaime
- , Antje Wichels
- & Frank Oliver Glöckner
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Short Communication |
Population dynamics of Vibrio spp. associated with marine sponge microcosms
- Maria Hoffmann
- , Markus Fischer
- & Steven R Monday
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Original Article |
Phylogeographic separation of marine and soil myxobacteria at high levels of classification
- De-Ming Jiang
- , Chiaki Kato
- & Yue-Zhong Li
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Commentary |
Unraveling the viral tapestry (from inside the capsid out)
- Shawn W Polson
- , Steven W Wilhelm
- & K Eric Wommack
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Original Article |
[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism
- Eric S Boyd
- , Trinity L Hamilton
- & John W Peters
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Original Article |
Bacterial community structure corresponds to performance during cathodic nitrate reduction
- Kelly C Wrighton
- , Bernardino Virdis
- & Korneel Rabaey
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Original Article |
Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein
- Masahiro Sota
- , Hirokazu Yano
- & Eva M Top
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Original Article |
Comparison of multiple metagenomes using phylogenetic networks based on ecological indices
- Suparna Mitra
- , Jack A Gilbert
- & Daniel H Huson
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Original Article |
Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores
- Audra S Liggenstoffer
- , Noha H Youssef
- & Mostafa S Elshahed
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Original Article |
The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses
- Etienne Yergeau
- , Hervé Hogues
- & Charles W Greer
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