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| Open AccessEvolutionary trajectories of small cell lung cancer under therapy
We uncover key processes of the genomic evolution of small cell lung cancer under therapy, identify the common ancestor as the source of clonal diversity at relapse and show central genomic patterns associated with drug response.
- Julie George
- , Lukas Maas
- & Roman K. Thomas
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Article |
Therapy-induced APOBEC3A drives evolution of persistent cancer cells
Induction of APOBEC3A in response to targeted therapies drives evolution of drug-tolerant persister cells, suggesting that its suppression may represent a potential therapeutic strategy in the prevention of acquired resistance to lung cancer targeted therapy.
- Hideko Isozaki
- , Ramin Sakhtemani
- & Aaron N. Hata
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Article
| Open AccessRHOJ controls EMT-associated resistance to chemotherapy
RHOJ regulates epithelial-to-mesenchymal-transition-associated resistance to chemotherapy by enhancing the response to replicative stress and activating the DNA damage response, enabling tumour cells to rapidly repair DNA lesions induced by chemotherapy.
- Maud Debaugnies
- , Sara Rodríguez-Acebes
- & Cédric Blanpain
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Article |
MEN1 mutations mediate clinical resistance to menin inhibition
Somatic mutations in MEN1 are identified in patients with leukaemia treated with a novel chromatin-targeting therapy, and the mechanism by which these mutations mediate therapeutic resistance is characterized.
- Florian Perner
- , Eytan M. Stein
- & Sheng F. Cai
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Article
| Open AccessMicrobiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer
Indole-3-acetic acid (3-IAA), a tryptophan metabolite derived from the gut microbiota, is associated with a better response to chemotherapy in pancreatic ductal adenocarcinoma (PDAC), and dietary interventions could have a role in the treatment of PDAC.
- Joseph Tintelnot
- , Yang Xu
- & Nicola Gagliani
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Article |
Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer
Deep whole-genome sequencing of serial blood samples and matched metastatic tissue reveals that circulating tumour DNA profiling enables detailed study of treatment-driven subclone dynamics, epigenomics and genome-wide somatic evolution in metastatic human cancers.
- Cameron Herberts
- , Matti Annala
- & Alexander W. Wyatt
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Article |
Cell–matrix interface regulates dormancy in human colon cancer stem cells
A genetic lineage-tracing system in human colorectal organoids identifies a population of dormant cancer cells that persists during chemotherapy and enables cancer regrowth, and the cell-adhesion molecule COL17A1 has a key role in the process of breaking dormancy.
- Yuki Ohta
- , Masayuki Fujii
- & Toshiro Sato
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Article |
Diverse alterations associated with resistance to KRAS(G12C) inhibition
Multiple treatment-emergent alterations appear in patients with advanced-stage cancer who were treated with a KRAS inhibitor.
- Yulei Zhao
- , Yonina R. Murciano-Goroff
- & Piro Lito
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Article |
Chromothripsis drives the evolution of gene amplification in cancer
Chromothripsis—a process during which chromosomes are ‘shattered’—drives the evolution of gene amplification and subsequent drug resistance in cancer cells.
- Ofer Shoshani
- , Simon F. Brunner
- & Don W. Cleveland
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Article |
Inhibition of PCSK9 potentiates immune checkpoint therapy for cancer
Inhibiting the PCSK9 protein, a regulator of cholesterol metabolism, enhances immune checkpoint therapy in mouse models of cancer, in a manner that depends on the regulation of antigen-presenting MHC I molecules.
- Xinjian Liu
- , Xuhui Bao
- & Chuan-Yuan Li
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Article |
Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition
Populations of KRAS(G12C)-mutant cancer cells can rapidly bypass the effects of treatment with KRAS(G12C) inhibitors because a subset of cells escapes drug-induced quiescence by producing new KRAS(G12C) that is maintained in its active, drug-insensitive state.
- Jenny Y. Xue
- , Yulei Zhao
- & Piro Lito
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Review Article |
A view on drug resistance in cancer
A review of drug resistance in cancer analyses each biological determinant of resistance separately and discusses existing and new therapeutic strategies to combat the problem as a whole.
- Neil Vasan
- , José Baselga
- & David M. Hyman
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Article |
DYNLL1 binds to MRE11 to limit DNA end resection in BRCA1-deficient cells
DYNLL1 antagonizes end resection of DNA double-strand breaks, thereby inhibiting homologous repair, and the loss of DYNLL1 correlates with poor progression-free survival of patients with BRCA1-mutant ovarian cancer.
- Yizhou Joseph He
- , Khyati Meghani
- & Dipanjan Chowdhury
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Letter |
A slow-cycling LGR5 tumour population mediates basal cell carcinoma relapse after therapy
Treatment of basal cell carcinoma with Smoothened inhibitors leaves a small population of quiescent cells that can drive relapse but can be eliminated by additional treatment with a Wnt signalling inhibitor.
- Adriana Sánchez-Danés
- , Jean-Christophe Larsimont
- & Cédric Blanpain
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Letter |
Suppression of insulin feedback enhances the efficacy of PI3K inhibitors
Glucose–insulin feedback can reactivate PI3K in tumours treated with PI3K inhibitors, reducing therapeutic efficacy, but this effect can be reduced by using drugs or diet to suppress the insulin response.
- Benjamin D. Hopkins
- , Chantal Pauli
- & Lewis C. Cantley
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Letter |
Acquired resistance to IDH inhibition through trans or cis dimer-interface mutations
A new mechanism of acquired clinical resistance in two patients with acute myeloid leukaemia driven by mutant IDH2 is described, in which a second-site mutation on the wild-type allele induces therapeutic resistance to IDH2 inhibitors.
- Andrew M. Intlekofer
- , Alan H. Shih
- & Eytan M. Stein
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Letter |
Codon-specific translation reprogramming promotes resistance to targeted therapy
Enzymes that catalyse modifications of wobble uridine 34 tRNA are essential for the survival of melanoma cells that rely on HIF1α-dependent metabolism through codon-dependent regulation of the translation of HIF1A mRNA.
- Francesca Rapino
- , Sylvain Delaunay
- & Pierre Close
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Article |
Intra-tumour diversification in colorectal cancer at the single-cell level
Organoids derived from individual cells from colorectal cancers and adjacent normal tissue are used to investigate intra-tumour diversification at the genomic, epigenetic and functional levels.
- Sophie F. Roerink
- , Nobuo Sasaki
- & Hans Clevers
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Letter |
Drug-tolerant persister cancer cells are vulnerable to GPX4 inhibition
Cancer persister cells, which survive cytotoxic treatments, are shown to be sensitive to inhibition of the lipid hydroperoxidase GPX4.
- Matthew J. Hangauer
- , Vasanthi S. Viswanathan
- & Michael T. McManus
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Letter |
PAK signalling drives acquired drug resistance to MAPK inhibitors in BRAF-mutant melanomas
BRAF-inhibition resistance in metastatic melanoma occurs through p21-activated kinase-mediated reactivation of ERK, whereas resistance to combined BRAF and MEK inhibition occurs through p21-activated kinase-mediated regulation of JNK and β-catenin phosphorylation, mTOR pathway activation and apoptosis inhibition in many patients.
- Hezhe Lu
- , Shujing Liu
- & Wei Guo
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Letter |
Dependency of a therapy-resistant state of cancer cells on a lipid peroxidase pathway
Therapy-resistant cancer cell states identified across diverse contexts are selectively vulnerable to ferroptotic cell death induced by inhibition of lipid peroxidase pathways converging on GPX4.
- Vasanthi S. Viswanathan
- , Matthew J. Ryan
- & Stuart L. Schreiber
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Letter |
Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance
Through drug exposure, a rare, transient transcriptional program characterized by high levels of expression of known resistance drivers can get ‘burned in’, leading to the selection of cells endowed with a transcriptional drug resistance and thus more chemoresistant cancers.
- Sydney M. Shaffer
- , Margaret C. Dunagin
- & Arjun Raj
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Article |
TIRR regulates 53BP1 by masking its histone methyl-lysine binding function
A new protein, Tudor interacting repair regulator (TIRR), affects DNA repair by masking the chromatin interaction domain of 53BP1, thereby preventing its recruitment to double-strand breaks.
- Pascal Drané
- , Marie-Eve Brault
- & Dipanjan Chowdhury
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Letter |
HER2 expression identifies dynamic functional states within circulating breast cancer cells
Patient-derived circulating tumour cells are used to characterize the dynamics and underlying plasticity of HER2 expression in non-HER2-amplified breast tumours.
- Nicole Vincent Jordan
- , Aditya Bardia
- & Daniel A. Haber
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Article |
Replication fork stability confers chemoresistance in BRCA-deficient cells
Protection of nascent DNA from degradation provides a mechanism that can promote synthetic viability and drug resistance in Brca-deficient cells without restoring homologous recombination at double-strand breaks.
- Arnab Ray Chaudhuri
- , Elsa Callen
- & André Nussenzweig
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Letter |
Overcoming mTOR resistance mutations with a new-generation mTOR inhibitor
Inhibitors of the mTOR kinase are in clinical trials for the treatment of cancer; here, mutations in mTOR that can lead to drug resistance are investigated and the results are used to design a new class of mTOR inhibitors that can overcome this resistance.
- Vanessa S. Rodrik-Outmezguine
- , Masanori Okaniwa
- & Kevan M. Shokat
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Letter |
BET inhibitor resistance emerges from leukaemia stem cells
BET inhibitors that target bromodomain chromatin readers such as BRD4 are being explored as potential therapeutics in cancer; here, in a MLL–AF9 mouse leukaemia model, resistance to BET inhibitors is shown to emerge from leukaemia stem cells, and be partly due to increased Wnt/β-catenin signalling.
- Chun Yew Fong
- , Omer Gilan
- & Mark A. Dawson
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Letter |
Transcriptional plasticity promotes primary and acquired resistance to BET inhibition
BET bromodomain inhibitors are being explored as potential therapeutics in cancer; here, AML cells are shown to evade sensitivity to BET inhibition through rewiring the transcriptional regulation of BRD4 target genes such as MYC in a process that is facilitated by suppression of PRC2 and WNT signalling activation.
- Philipp Rathert
- , Mareike Roth
- & Johannes Zuber
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Letter |
Therapy-induced tumour secretomes promote resistance and tumour progression
Tumour cells respond to an effective, targeted drug treatment with BRAF, ALK or EGFR kinase inhibitors by inducing a complex network of secreted signals that promote tumour growth, dissemination and metastasis of drug-resistant cancer cell clones, and increase the survival of drug-sensitive tumour cells, potentially contributing to incomplete tumour regression.
- Anna C. Obenauf
- , Yilong Zou
- & Joan Massagué
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Letter |
REV7 counteracts DNA double-strand break resection and affects PARP inhibition
Loss of REV7 is shown to regulate end resection of double-stranded DNA breaks in BRCA1-deficient cells, leading to PARP inhibitor resistance and restoration of homologous recombination; REV7 dictates pathway choice in BRCA1-deficient cells and during immunoglobulin class switching.
- Guotai Xu
- , J. Ross Chapman
- & Sven Rottenberg
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Article |
Loss of oncogenic Notch1 with resistance to a PI3K inhibitor in T-cell leukaemia
Mutations that dysregulate Notch1 and Ras/PI3K signalling are common in T-cell acute lymphoblastic leukaemia; here, treatment with a PI3K inhibitor is shown to induce drug resistance that is associated with downregulation of activated Notch1 signalling, suggesting that inhibition of both Notch1 and PI3K could promote drug resistance.
- Monique Dail
- , Jason Wong
- & Kevin Shannon
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Outlook |
Biology: Three known unknowns
Even as cancer therapies improve, basic questions about drug resistance, tumour spread and the role of normal tissue remain unanswered.
- Katherine Bourzac
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Outlook |
Clinical trials: More trials, fewer tribulations
Clinical studies that group patients according to their molecular profile can make for better and faster drug approval decisions.
- Michael Eisenstein
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Letter |
The sonic hedgehog factor GLI1 imparts drug resistance through inducible glucuronidation
A new mechanism by which acute myeloid leukaemia patients become resistant to Ara-C and a newer treatment, ribavirin, is uncovered; these drugs can be glucuronidated and thereby inactivated by members of the UDP glucuronosyltransferase family of enzymes activated through GLI1 signalling.
- Hiba Ahmad Zahreddine
- , Biljana Culjkovic-Kraljacic
- & Katherine L. B. Borden
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Letter |
A melanocyte lineage program confers resistance to MAP kinase pathway inhibition
Expression of more than 15,500 genes individually in a melanoma cell line treated with RAF, MEK, ERK or combined RAF–MEK inhibitors reveals a cyclic-AMP-dependent melanocytic signalling network associated with drug resistance; this may represent a novel therapeutic target for melanoma treatment.
- Cory M. Johannessen
- , Laura A. Johnson
- & Levi A. Garraway
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Research Highlights |
Switching off cancer resistance
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Outlook |
Mathematical modelling: Forecasting cancer
Complex mathematical models are helping researchers understand cancer's evolution and providing clues on how to thwart drug resistance.
- Katharine Gammon
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News & Views |
Tumours switch to resist
Tumour cells can respond to targeted immune-cell therapies by losing proteins that mark them as being cancerous. Subverting this resistance mechanism may lead to more durable cancer-treatment strategies. See Letter p.412
- Antoni Ribas
- & Paul C. Tumeh
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Letter |
Melanomas resist T-cell therapy through inflammation-induced reversible dedifferentiation
A genetically engineered mouse model is used to determine the mechanism of acquired resistance to adoptive therapy with cytotoxic T cells specific for a melanocytic differentiation antigen; tumour necrosis factor (TNF)-α is identified as a crucial factor that causes reversible dedifferentiation of mouse and human melanoma cells.
- Jennifer Landsberg
- , Judith Kohlmeyer
- & Thomas Tüting
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Letter |
Crystal structure of the multidrug transporter P-glycoprotein from Caenorhabditis elegans
Biochemical and structural analysis of the drug transporter P-glycoprotein in Caenorhabditis elegans at a resolution of 3.4 angstroms is used to generate a homology model of the human protein and supports a picture in which P-glycoprotein uses the energy from ATP hydrolysis to expel lipophilic molecules from the inner leaflet of the cell membrane.
- Mi Sun Jin
- , Michael L. Oldham
- & Jue Chen
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Letter |
A restricted cell population propagates glioblastoma growth after chemotherapy
By using a GFP reporter protein expressed selectively in neural stem cells in a mouse model of glioblastoma, a small subset of GFP-positive glioma cells is shown to be responsible for re-growth of tumours after chemotherapy.
- Jian Chen
- , Yanjiao Li
- & Luis F. Parada
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Research Highlights |
p53 can be cancer's friend, not foe
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News |
Neighbouring cells help cancers dodge drugs
Proteins in a tumour's microenvironment play a part in drug resistance.
- Jennifer Carpenter
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Letter |
Widespread potential for growth-factor-driven resistance to anticancer kinase inhibitors
The efficacy of kinase inhibitors in treating cancer is limited by drug resistance; here it is shown that most human tumour cells can develop drug resistance through being exposed to one or more receptor tyrosine kinase ligands.
- Timothy R. Wilson
- , Jane Fridlyand
- & Jeff Settleman
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Letter |
Tumour micro-environment elicits innate resistance to RAF inhibitors through HGF secretion
The secretion of hepatocyte growth factor by stromal cells in the tumour micro-environment can make melanoma resistant to RAF inhibitors, through the activation of the MET signalling pathway, but a combination of RAF and MET inhibitors can overcome this resistance.
- Ravid Straussman
- , Teppei Morikawa
- & Todd R. Golub
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News & Views |
Pinprick diagnostics
Rare tumour cells with mutations that confer drug resistance can go undetected by standard testing procedures, according to two studies, which show that such mutations can be detected in patients' blood. See Letters p.532 and p.537
- Eduardo Vilar
- & Josep Tabernero
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Letter |
The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers
This work on colorectal cancer shows that secondary mutations in KRAS that confer resistance to panitumumab, an anti-EGFR monoclonal antibody, are already present when antibody treatment begins; the apparent inevitability of resistance suggests that combinations of drugs targeting at least two different oncogenic pathway will be needed for treatment.
- Luis A. Diaz Jr
- , Richard T. Williams
- & Bert Vogelstein
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Letter |
Emergence of KRAS mutations and acquired resistance to anti-EGFR therapy in colorectal cancer
Molecular alterations in KRAS are associated with acquired resistance to anti-epidermal growth factor receptor (EGFR) treatment in colorectal cancer; resistant mutations can be identified in the blood of patients, months before clinical evidence of disease progression.
- Sandra Misale
- , Rona Yaeger
- & Alberto Bardelli
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News & Views |
Primed for resistance
A drug for treating melanoma is ineffective in colorectal cancers that have the same causative mutation. Studies of how cells adapt to the drug reveal why this is so, and suggest combination therapies that may be more effective. See Letter p.100
- David B. Solit
- & Pasi A. Jänne