Abstract
Mycobacterium tuberculosis (M.tb), which requires iron for survival, acquires this element by synthesizing iron-binding molecules known as siderophores and by recruiting a host iron-transport protein, transferrin, to the phagosome. The siderophores extract iron from transferrin and transport it into the bacterium. Here we describe an additional mechanism for iron acquisition, consisting of an M.tb protein that drives transport of human holo-transferrin into M.tb cells. The pathogenic strain M.tb H37Rv expresses several proteins that can bind human holo-transferrin. One of these proteins is the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH, Rv1436), which is present on the surface of M.tb and its relative Mycobacterium smegmatis. Overexpression of GAPDH results in increased transferrin binding to M.tb cells and iron uptake. Human transferrin is internalized across the mycobacterial cell wall in a GAPDH-dependent manner within infected macrophages.
Similar content being viewed by others
Introduction
Mycobacterium tuberculosis (M.tb) is an intracellular pathogen that persists within the host cell phagosome for extended periods and a regular supply of iron is essential for its survival. To acquire iron, mycobacteria synthesize iron-chelating molecules known as siderophores. M.tb utilizes both membrane-associated mycobactins and secreted carboxymycobactins to sequester host iron1,2,3. In addition, this pathogen also acquires iron from haem4; intracellular M.tb are known to actively recruit host iron carrier proteins transferrin and lactoferrin to the phagosomal compartment5,6,7,8. It is reported that carboxymycobactins remove iron from transferrin in the phagosome, while mycobactins present in the bacterial membrane transport this iron into the bacterial cytoplasm9,10. Carboxymycobactin also delivers iron by a mycobactin-independent mechanism using the IrtAB transporter11. However, the detailed process by which transferrin iron is released and whether other mycobacterial components are involved in the process remain unknown12.
The absence of mycobactin in M.tb-infected tissues suggests that alternate iron acquisition mechanisms may exist in vivo13. The same study demonstrated that at pH 6.2, the presence of host proteins transferrin and lactoferrin promoted the growth of M. paratuberculosis mycobactin auxotrophs in culture. This aspect cannot be explained by the simple dissociation of bound iron from transferrin and lactoferrin, which is known to occur maximally at pH 5.5-4.0 (ref. 13). Another recent study demonstrates that the recombinant BCG(mbtB)30 strain which is unable to synthesize both mycobactin and carboxymycobactin retains the ability to multiply and survive within macrophages over the initial days of infection14. The importance of transferrin in mycobacterial iron acquisition is also evident from studies demonstrating that intraphagosomal M.tb siderophore knockout strains retained the ability to recruit and acquire iron by utilizing transferrin5,14,15. Other studies have demonstrated that iron-saturated transferrin promotes the replication of M. avium within the phagosome15. Elevated serum iron and high levels of iron-saturated transferrin are known to have a strong correlation with the exacerbation of tuberculosis in both mouse models and patient studies3,16,17,18,19,20.
Several pathogens including Staphylococcus aureus, S. epidermidis, N. meningitidis, N. gonorrhoeae, H. influenza and others are known to acquire iron by the direct binding of transferrin on the cell surface21,22,23,24. However, no in vivo or in vitro studies have ever identified the existence of transferrin-binding proteins on the surface of M.tb.
Here we report the presence of several proteins that are capable of sequestering transferrin at the bacterial cell surface. Transferrin-iron acquisition by this pathway is independent of siderophores. Instead, transferrin-associated iron is obtained by the trafficking and internalization of the host protein across the bacterial cell wall, a mechanism not previously reported for M.tb. This pathway is utilized during the infection of macrophages by intracellular bacilli and is relevant in understanding the fundamental mechanisms of iron acquisition in M.tb.
Results
Transferrin binds to M.tb
Intact M.tb H37Ra cells were observed to bind Transferrin-Alexa 647 (Tf-A647). The specificity of binding was confirmed by the inhibition of labelling in the presence of 200-fold excess of unlabelled transferrin (P<0.05, determined by Student’s t-test; Fig. 1a). The surface of intact M.tb H37Ra was also decorated with transferrin-conjugated gold particles as visualized by Transmission Electron Microscope (TEM; Fig. 1b, Supplementary Fig. 1a–e) as compared with controls (Fig. 1c).
Co-immunoprecipitation and peptide mass fingerprinting
Co-immunoprecipitation from M.tb H37Rv cell membrane fraction to determine the identity of transferrin-binding protein(s) indicated the presence of several proteins in the range of 25–40 kDa (Fig. 1d). Pull-down using carbonic anhydrase (a negatively charged protein, as a nonspecific control) did not reveal the presence of any interacting proteins (Fig. 1e). This indicates that the proteins identified by co-immunoprecipitation with transferrin were specific. Peptide mass fingerprinting (PMF) of the most prominent proteins identified these as iron-regulated elongation factor tu (Rv0685, 25% coverage, molecular weight search (MOWSE ) score 107), L-Lactate dehydrogenase (Rv1872c; 38% coverage, MOWSE score 83), acyl-carrier protein desaturase (Rv0824c; 16% coverage, MOWSE score 166), 50S ribosomal protein L2 (Rv0704; 46% coverage, MOWSE score 100), 50S ribosomal protein L1 (Rv0641; 37% coverage, MOWSE score 269) and GAPDH (Rv1436; 32% coverage, MOWSE score 552; Table 1, Fig. 1f). The MOWSE score is a protein identification programme that recognizes the relative abundance of peptides of a given length. This programme calculates the probability that the observed match between the experimental data set and each sequence database entry is a chance event, the match with the lowest probability is reported as the best match25.
We selected GAPDH for further analysis because: (i) GAPDH has recently been identified as a transferrin receptor in macrophages and numerous other cell types26,27,28, (ii) the highly conserved nature of the protein and (iii) its role as a virulence factor29,30,31,32.
Localization of GAPDH in different cellular fractions
A peptide sequence from amino acid 59–100 was used to raise a rabbit polyclonal antibody against M.tb GAPDH. The antibody detected a prominent ~40 kDa protein in M.tb and M. smegmatis whole-cell lysates but did not detect GAPDH from other microorganisms or mammalian cells, indicating its specificity for mycobacterial GAPDH (Supplementary Figs 1f and 6a). GAPDH was found to be present in the cytosol, cell membrane and cell wall fractions of M.tb H37Ra, H37Rv and CDC1551, and in M. smegmatis (Fig. 1g and Supplementary Fig. 6b). The M.tb H37Ra fractions were prepared in our laboratory using standard methods and the purity of fractions was confirmed by fraction-specific antibodies (Supplementary Figs 1g and 6c). M.tb GAPDH has previously been detected on the cell surface as a receptor for EGF33. An additional faint band of ~30 kDa was detected in cell membrane fractions of all strains (Fig. 1g) which was also identified as GAPDH based on PMF results (47% coverage, MOWSE score 129), suggesting the presence of a proteolytically cleaved fragment (Supplementary Fig. 1h). Other investigators have also reported a variation in the molecular weight of GAPDH. Proteomic two-dimensional analysis of M.tb H37Rv supernatants has revealed the presence of GAPDH with a spread of molecular weights and a variation of almost 10 kDa has also been reported in GAPDH of mammalian origin (according to data available at the Proteome two-dimensional-PAGE Database, http://web.mpiib-berlin.mpg.de/cgi-bin/pdbs/2d-page/extern/index.cgi).
Enzymatic activity of cell fractions
GAPDH specifically catalyses the reversible oxidative phosphorylation of glyceraldehyde-3-phosphate (G-3-P) to 1, 3-bis phosphoglycerate coupled with reduction of NAD+ to NADH. Enzyme assay confirmed that GAPDH present in the cytosolic, cell membrane and cell wall of M.tb H37Rv was functionally active (Fig. 1h).
Interaction of GAPDH and transferrin on M.tb cell surface
The interaction of transferrin and GAPDH was checked by co-immunoprecipitation. Transferrin was observed to interact with mycobacterial GAPDH from all three cellular fractions (Fig. 2a and Supplementary Fig. 6d).
Having established that this interaction occurs in the pathogenic strain, we used M.tb H37Ra as a model system to further define whether this is a possible route for transferrin-associated iron uptake. To confirm the interaction between cell surface GAPDH and transferrin, we carried out acceptor photobleaching Förster resonance energy transfer (FRET) analysis34 using M.tb H37Ra cells expressing GAPDH mCherry (GAPDH-mCh) or controls expressing mCherry (mCh) alone. A significant increase in donor (Tf-A488) fluorescence intensity was observed upon photobleaching of the acceptor (mCh) in strains expressing GAPDH-mCh (Fig. 2b,d) as compared with control cells expressing mCh alone (Fig. 2c,d). These results indicate the presence of a significant FRET signal as would be expected in the case of a GAPDH–transferrin interaction on bacteria. The occurrence of FRET indicates that the two interacting partners are at a proximity of 1–10 nm (ref. 34). Immunogold TEM further demonstrated the colocalization of GAPDH and transferrin-conjugated gold particles on the surface of intact M.tb H37Ra GAPDH-mCh cells (Fig. 2f,g). Controls labelled with pre-immune sera showed the presence of Tf-gold particles alone (Fig. 2e). Together these results suggest that transferrin interacts with GAPDH on the surface of intact bacilli.
Iron depletion enhances surface GAPDH levels and Tf binding
Under conditions of iron depletion, a twofold increase in GAPDH expression and a threefold increase of transferrin binding was evident on the surface of M.tb H37Ra suggesting that both surface GAPDH expression and transferrin binding are sensitive to iron levels (Fig. 3a).
Enhanced surface GAPDH results in increased Tf iron uptake
The cell surface GAPDH enzyme activity was assessed on M.tb H37Ra cells transformed with either mCh or GAPDH-mCh. As expected cells overexpressing GAPDH-mCh showed significantly higher ectoenzyme activity as compared with untransformed controls or mCh transformed cells (Fig. 3b). To assess whether this enhanced GAPDH surface expression corresponds with an increase in transferrin binding, transformed cells were evaluated for cell surface GAPDH expression and transferrin binding by whole-cell enzyme-linked immunosorbent assay (ELISA). GAPDH-mCh transformed cells demonstrated significantly higher levels of surface GAPDH along with elevated Tf-A647 binding as compared with cells expressing mCh alone (Fig. 3c). Enhanced GAPDH expression also correlated to a greater uptake of transferrin-associated iron by these cells as indicated by the uptake of Tf-55Fe in 3 h (Fig. 3d). To confirm whether this interaction is specific to holo-transferrin alone, both mCh and GAPDH-mCh cells were incubated with Apo-Tf-A647. No significant difference was observed between the two strains (Fig. 3e).
To further confirm whether GAPDH enhances iron acquisition via transferrin, a calcein-quenching assay was established (Supplementary Fig. 3a,b). M.tb H37Ra cells expressing GAPDH-mCh or mCh were pre-labelled with calcein, followed by incubation in the absence or presence of human holo-transferrin at either 4 °C (Fig. 3f) or 37 °C (Fig. 3g). At 37 °C in the presence of transferrin, a significantly greater quenching of calcein fluorescence signal was observed in GAPDH-mCh cells as compared with those expressing mCh alone (P<0.005 using Student’s t-test) (Fig. 3g,i,k). The comparatively small decrease in signal observed with mCh cells (Fig. 3k) can be attributed to the inherent GAPDH present on the surface of these cells. Both strains demonstrated no change in fluorescence of controls in the absence of transferrin or when incubated with transferrin at 4 °C (Fig. 3f,h,j).
Transferrin-mediated iron uptake in M. smegmatis Δesx-3 strain
GAPDH was also identified in various fractions of M. smegmatis. To assess whether (i) transferrin-mediated uptake exists across mycobacterial species and (ii) whether mycobactin is essential for iron uptake from transferrin, we utilized the M. smegmatis Δesx-3 that lacks the esx-3 secretion system and is therefore incapable of mycobactin-mediated iron uptake35. M. smegmatis wild-type and M. smegmatis Δesx-3 strains demonstrated no difference in binding of transferrin (Supplementary Fig. 3c) and both acquired comparable levels of transferrin iron within 1 h (Supplementary Fig. 3d–f).
Affinity analysis of GAPDH-Tf interaction
The interaction of rGAPDH and transferrin was first confirmed by far western blot (Supplementary Fig. 4a) and also by ELISA (Supplementary Fig. 4b). For affinity measurements by microscale thermophoresis (MST), the concentration of the fluorescently labelled transferrin molecule was kept constant at 70 nM and the concentration of the unlabelled titrant, that is, GAPDH was varied from 2 nM to 2 μM; the KD value was estimated to be 160±24 nM (Fig. 4a).
Characterization of transferrin binding to M.tb cells
Binding of transferrin onto M.tb H37Ra cell surface was concentration dependent and saturable, indicative of the presence of receptor-mediated binding to cells (Fig. 4b). The total number of transferrin binding sites was estimated to be 7,136±255 per cell.
To evaluate the specificity and the relative importance of GAPDH as a transferrin receptor on M.tb cells, inhibition of transferrin binding to bacilli in the presence of molar excess of rGAPDH was measured. Addition of increasing molar concentrations of rGAPDH resulted in a steady decrease of transferrin binding (Fig. 4c) with up to ~80% inhibition of transferrin binding being achieved.
Internalization of transferrin and GAPDH
After incubation of cells for 1 h at 37 °C, the presence of transferrin-labelled gold particles was observed by TEM in the cytoplasm of M.tb, indicating that transferrin is internalized into cells. Tomography of intact bacteria that had internalized labelled transferrin also clearly revealed the presence of Tf-gold particles within the cytoplasm with practically no particles remaining bound at the surface of the bacilli (Fig. 4d–f, Supplementary Movie 1, Supplementary Fig. 7). No internalization was evident in controls (Fig. 4g). Western blotting of purified cytoplasmic fractions provided further evidence that transferrin is indeed internalized after incubation of cells at 37 °C but not at 4 °C (Fig. 4h). These results are in concurrence with those of iron uptake experiments (Fig. 3f,g). Transferrin internalization was also similarly confirmed in both M. smegmatis wild-type and M. smegmatis Δesx-3 strains (Supplementary Fig. 4c). The internalization of the transferrin-binding protein complex was confirmed by pull-down of surface biotinylated proteins and detection of associated transferrin in the cytosolic fraction (Fig. 4i, and Supplementary Fig. 6e). In a reverse experiment, internalized transferrin captured onto Protein-A beads pre-coated with anti-transferrin antibody were observed to co-immunoprecipitate GAPDH (Fig. 4j, Supplementary Fig 6f).
Internalization of Tf in intracellular bacilli
To demonstrate that the interaction of M.tb GAPDH and transferrin is relevant during infection, the trafficking of transferrin was analysed in THP-1 macrophages infected with M.tb H37Ra GAPDH-mCh, M.tb H37Ra mCh, M. smegmatis mCh or M. smegmatis Δesx-3 mCh strains. Transferrin was observed to colocalize to the intracellular bacteria in all strains assessed (Supplementary Fig. 5a–d). To determine whether the transferrin is localized within the intracellular bacilli, post infection, cells were first incubated with Tf-A647 to allow internalization. Subsequently, bacilli resident in the phagosome were isolated and treated with pronase to digest any surface-bound transferrin. Bacilli were then analysed for the presence of fluorescence corresponding to Tf-A647. Significantly, the M.tb H37Ra strain expressing GAPDH mCh demonstrated an almost twofold increase of Tf-A647 internalization as compared with control strains (P<0.0005 using Student’s t-test; Fig. 5a). In isolated phagosomal bacilli, fluorescence signals for both GAPDH mCh and Tf-A647 were evident (Fig. 5b). The experiment was repeated using transferrin. A pull-down of internalized transferrin from the cytoplasmic fraction of isolated intracellular M.tb H37Ra resulted in the co-immunoprecipitation of M.tb GAPDH (Fig. 5c, Supplementary Fig. 6g). Both M. smegmatis wild-type and M. smegmatis Δesx-3 strains demonstrated an internalization of Tf-A647, indicating that uptake of transferrin is independent from siderophore-mediated iron uptake (Fig. 5d). This suggests that not only is transferrin transported to the phagosome during infection, but it is also internalized into the bacilli via specific receptors.
Discussion
Despite several studies that suggest trafficking of the iron carrier protein transferrin to the phagosome, relatively little is known as to how iron is withdrawn from these molecules and delivered into the bacteria12. Our studies demonstrate for the first time that mycobacterial proteins sequester transferrin at the bacterial surface. Six interacting proteins were identified which included iron-regulated elongation factor tu (Rv0685), L-Lactate dehydrogenase (Rv1872c), acyl-carrier protein desaturase (Rv0824c), the 50S ribosomal proteins L1 (Rv0641), L2 (Rv0704) and glyceraldehyde-3-phosphate dehydrogenase (Rv1436). Of these proteins, homologues of elongation factor tu36, L-Lactate dehydrogenase37 and ribosomal proteins38 are known to be multifunctional in other organisms while GAPDH is known to be a virulence factor for several pathogens29,30,31,32,33. GAPDH has also been reported as a transferrin-binding protein in S. aureus and S. epidermidis21. In eukaryotes, numerous functions have been attributed to GAPDH including its role as a receptor for transferrin in different cell types and especially in macrophages26,27,28,39. Since this molecule is highly conserved across species (~50% identity with human GAPDH), we initially selected GAPDH to further explore the role of this transferrin-binding protein in M.tb. Our results confirmed that GAPDH specifically binds to holo-transferrin rather than apotransferrin, and that its expression on the mycobacterial cell surface is sensitive to iron depletion, as observed for other proteins involved in iron metabolism2,3,40.
The presence of GAPDH in cytosol, cell membrane and cell wall fractions of virulent and avirulent strains was confirmed. This observation is in accordance with previous results where it has been identified as a 43.6-kDa culture filtrate protein of M. bovis41 and as a membrane-associated protein in M.tb H37Rv42,43,44,45. The presence of GAPDH and other glycolytic proteins on the surface of several prokaryotes and eukaryotic cells, despite the lack of a distinct secretory signal, has been referred to as ‘nonclassical secretion’46,47 and a bioinformatics-based analysis of M.tb GAPDH failed to predict any secretion via the sec-dependent or twin arginine translocation system41.
In the current study, multiple proteins have been identified to interact with transferrin. Using microscale thermophoresis we identified the KD value of GAPDH–Tf interaction to be 160±24 nM. The addition of molar excess of recombinant protein, inhibited transferrin binding onto the cell surface by ~80% indicating that GAPDH is an important component of transferrin receptor-mediated iron uptake in M.tb. For further studies involving GAPDH-mediated transferrin-iron acquisition, strains overexpressing GAPDH were utilized, these clearly demonstrated an enhanced sequestration of transferrin at the cell surface that correlated with an increase of both transferrin binding and iron acquisition. A knockout strain was not utilized as GAPDH has been reported as an essential gene by transposon mutagenesis48.
We considered a previous report which demonstrates that carboxymycobactins first withdraw transferrin iron, which is then transferred to membrane-bound mycobactins. According to this study, mycobactins are incapable of directly acquiring transferrin iron for the cell9. This inference was based on experiments where M.tb cultures were incubated either with ferri-carboxymycobactin or transferrin and iron uptake was evaluated by measuring the amount of ferri-mycobactin. These experiments did not evaluate total cellular uptake of transferrin-bound iron into the cells, which might have occurred by the alternate mechanism described in this study. Supporting the existence of siderophore-independent mechanisms are reports of the recombinant BCG(mbtB)30 strain that was unable to synthesize both mycobactin and carboxymycobactin yet survived in vivo and was able to acquire transferrin iron14.
In addition, the acquisition of transferrin iron by mycobactins is a relatively slow process; studies have demonstrated that after 24 h of incubation only 30% of mycobactin was converted to Fe-mycobactin49. However, the uptake of transferrin iron observed in our experiments was rapid with increased cellular iron levels observed within 6 h for M.tb H37Ra and within 1 h for M. smegmatis strains. Crucially, the M. smegmatis Δesx-3 strain that is unable to utilize mycobactin35 retained its ability to acquire transferrin iron to levels comparable with that of the wild-type strain. Siderophore synthesis occurs only after culture in iron-free media. In our studies the short pre-incubation (in media lacking iron) and incubation times (with transferrin) coupled with washing steps excludes the possibility that carboxymycobactin or exochelins are synthesized to be present extracellularly for withdrawal of transferrin iron. We then considered the hitherto unreported possibility that transferrin could be internalized into the bacterium as is observed in mammalian cells. Using multiple approaches we unequivocally demonstrate that sequestration of holo-transferrin at the bacterial surface is followed by its internalization into the cytoplasm at 37 °C. Transferrin internalization was detected in M.tb H37Ra (1 h) and M. smegmatis strains including the M. smegmatis Δesx-3 strain within 20 min.
In the context of intraphagosomal bacilli, both M.tb and M. avium infected macrophages are known to acquire transferrin and lactoferrin iron by recruiting these host proteins to the phagosome5,6,7,8. Interestingly, it is also known that M.tb and M. bovis BCG strains incapable of synthesizing siderophores, survive intracellularly5,14. Within the first hour of infection, the phagosomal vacuole containing M.tb H37RvO1A siderophore knockout strain acquired more transferrin iron than the wild-type M.tb H37Rv strain5. However, 24 h post infection, the mutant strain displayed lower iron levels than the wild type. Survival of the rBCG(mbtB)30 strain also appeared to be independent of siderophores at the early stages of infection in in vivo studies using SCID mice14. This suggests that during establishment of infection a rapid siderophore-independent uptake mechanism for transferrin iron may exist. While at later stages, once bacilli sense iron depletion, siderophore-mediated uptake may become the primary route for iron uptake via transferrin5. Significantly, five of the six transferrin-binding proteins reported in the current study have been identified as a part of the surface proteome of non-phagocytosed and phagocytosed M. avium50 and M. smegmatis51, although till date, no precise function had been attributed to them. In addition, recent proteomic analysis of M. tuberculosis H37Rv has revealed the presence of all six proteins in the cell wall and membrane fraction44,45. To understand the relevance of the GAPDH–Tf pathway during infection, colocalization of transferrin to intraphagosomal bacilli was confirmed using a macrophage cell culture model. To establish that transferrin is not merely trafficked to phagosome, but is actively internalized by the bacilli, isolated intraphagosomal bacilli were assessed for the presence of internalized Tf-A647 post infection. GAPDH-overexpressing M.tb demonstrated significantly higher levels of transferrin uptake. In addition, co-immunoprecipitation confirmed the presence of transferrin within the cytosolic fraction of bacilli isolated from macrophages.
Based on these results we propose that M.tb can acquire transferrin iron by three mechanisms (Fig. 4k). The first is withdrawal of iron by carboxymycobactin, transfer of iron to mycobactin and subsequent intracellular delivery. The second mechanism involves the withdrawal of transferrin iron by carboxymycobactin, and delivery of iron to the bacilli using the high-affinity transporter IrtAB by a mycobactin-independent pathway. Finally, our present studies reveal an additional route for transferrin-iron acquisition that is independent of siderophores and involves the internalization of transferrin by GAPDH and perhaps other identified surface proteins into the bacterium with ferrireductases (present within the cytoplasm) being involved in the removal of iron from transferrin.
These findings should also be considered in light of numerous reports that associate high serum iron levels and transferrin-iron saturation with an increased mortality and morbidity due to tuberculosis16,17,18,19,20. It is possible that extracellular M.tb present in a transferrin-rich environment utilize this pathway for immediate access to iron. With consideration to our recent results as well as previous studies5, this mechanism could also be important in the establishment of infection, until such a time that siderophore synthesis and secretion is initiated. A mechanism similar to receptor-mediated endocytosis has only been reported previously in the bacteria Gemmata obscuriglobus52. Taken together, this study provides a completely new perspective not only in terms of iron acquisition but also the possibility of receptor-mediated uptake and trafficking that has never previously been reported in M.tb.
Methods
Mycobacterial strains
M.tb H37Ra and M. smegmatis mc2155 strains were obtained from microbial-type culture collection, Institute of Microbial Technology (IMTECH), Chandigarh. Mycobacterial strains, M. tuberculosis H37Ra and M. smegmatis mc2155 were grown in Middlebrook’s 7H9 broth supplemented with glycerol, OADC and Tween 80 or Middlebrook’s 7H10 agar supplemented with glycerol and OADC at 37 °C. M. smegmatis Δesx-3 strain was a kind gift from Professor E. Rubin, Harvard School of Public Health, USA35.
Surface binding of Transferrin on M.tb
M.tb H37Ra, M. smegmatis wild-type and M. smegmatis Δesx-3 cells were cultured to log phase, 2 × 108 cells were used per assay. Cells were washed with phosphate-buffered saline (PBS) and blocked for 1 h at 4 °C with PBS containing 2% BSA. Cells were then incubated with holo-Tf-A647 (Invitrogen; 20 μg per 100 μl of PBS, 1% BSA) alone or in the presence of 200-fold excess unlabelled human holo-transferrin (Sigma) at 4 °C for 2 h. Finally, cells were washed extensively with PBS and fluorescence data of 104 cells per assay was acquired using a BD FACS Verse instrument. Experiments were repeated thrice, representative data of one experiment is shown, statistical significance was determined by Student’s t-test.
For immunogold labelling, log phase M.tb H37Ra cell pellets were washed with PBS containing 0.2% casein followed by blocking with PBS containing 2% casein at 4 °C for 1 h. To detect transferrin binding, 2 × 108 cells were incubated with 20 μg transferrin-gold particles in 100 μl PBS, 0.2% casein for 2 h at 4 °C, particles were prepared as described previously53. Cells were fixed in Karnovsky’s fixative for 30 min, followed by two washes with 5 mM NaCl. Finally, cells were resuspended in PBS, placed on carbon-coated grids and viewed in a JEOL 2100 TEM. As a negative control, samples were similarly incubated with streptavidin-gold conjugate (20 nm, Sigma) instead of transferrin.
Co-imunoprecipitation of M.tb proteins with transferrin
Transferrin-biotin (Sigma, 500 μg) was incubated with 100 μl of streptavidin paramagnetic particles (SAPMPs) (Pierce) for 1 h at 4 °C on a rotospin. Particles were washed with PBS and mixed with 1.5 mg of M.tb H37Rv cell membrane (obtained from BEI Resources, NIAID, USA) for 2 h at 4 °C. After exhaustive washes with PBS, the beads were boiled for 15 min in 30 μl Laemmli sample buffer. To observe the interacting proteins, a 10% SDS–polyacrylamide gel electrophoresis (SDS–PAGE) gel was run and stained with Coomassie blue. Control experiments were carried out with an equivalent amount of biotinylated carbonic anhydrase instead of transferrin.
Peptide mass fingerprinting
The most prominent bands observed to co-immunoprecipitate with transferrin were in the range of 30–40 kDa, six of these bands were excised from 10% SDS–PAGE stained gels, PMF was carried out at Vimta Labs, Hyderabad, India. Database searching (Swiss-Prot) was restricted to M. tuberculosis complex, and protein identification were performed with MASCOT Software ( http://www.matrixscience.com), with trypsin plus one missed cleavage, carboxyamidemethylation as a fixed modification and methionine oxidation as a variable modification and a mass tolerance of 0.5 Da for the precursor molecular weight. The criteria to accept a protein hit as a valid identification was multiple tryptic peptide matches to the protein sequence and a significance of P<0.05 (ref. 25).
Polyclonal antibody against mycobacterial GAPDH
A peptide of residues 59–100 from the M.tb H37Rv GAPDH sequence was synthesized for immunization. Rabbits and mice were handled according to the guidelines of Institutional Animal Ethics Committee, National Institute of Pharmaceutical Education and Research (NIPER). Primary immunization of two 12–18-week-old NZW female rabbits was done as described previously54. Animals were bled four days after last immunization and serum was prepared. The specificity of the antibody was determined by western blotting against lysates (40 μg per lane) from M.tb H37Rv (positive control), M. smegmatis, Escherichia coli JM109, Saccharomyces cerevisiae, SP2/O.Ag14 (mouse myeloma) and THP-1 (human macrophage cell line). Prestained molecular weight marker (New England Biolabs) was run alongside samples. GAPDH was detected using the α-GAPDH rabbit polyclonal antibody (1:1,000) for 1 h, followed by incubation with goat α-rabbit IgG-HRP for 1 h. Finally, blots were washed and developed with TMB/H2O2 (Bangalore Genei). A polyclonal mouse antibody was similarly raised in 6–8-week-old female Balb/c mice immunized with 50 μg antigen, followed by three boosters.
GAPDH enzyme assay of cellular fractions
The enzymatic activity of GAPDH was evaluated in cytosol, membrane and cell wall fractions of M.tb H37Rv as described previously using multiple batches of samples obtained from Biodefense and Emerging Infections (BEI) Research Resources Repository55. Briefly, 50 μg of M.tb H37Rv samples were added to wells containing 200 μl of assay buffer (50 mM HEPES, 10 mM sodium arsenate and 5 mM EDTA, pH 8.5), 1 mM NAD+ and 2 mM G-3-P (Sigma) at 25 °C. Rabbit muscle GAPDH (RM-GAPDH, 400 ng per 200 μl assay buffer; Sigma) was used as a positive control. Enzyme activity was measured as the increase in absorbance at 340 nm due to the formation of NADH at the end of 10 min. For negative controls, assays were carried out with buffer lacking the specific substrate G-3-P, these values were subtracted from the final absorbance.
Co-immunoprecipitation of Tf and GAPDH
Transferrin-biotin was first mixed with 100 μl of SAPMPs (Pierce) for 1 h at 4 °C on a rotospin. The particles were washed with PBS and incubated with 1–2 mg of protein from cytosol, cell membrane or cell wall fractions of M.tb H37Rv for 2 h at 4 °C. After washing with PBS, particles were resuspended in 30 μl of Laemmli sample buffer, boiled and loaded on a 10% SDS–PAGE gel. As a negative control, SAPMPs were pre-loaded with an unrelated biotinylated protein (carbonic anhydrase) and similarly processed. Captured GAPDH was detected by western blotting using α-GAPDH antibody, as described previously. Prestained molecular weight markers were run with each experiment.
FRET analysis of transferrin and GAPDH interaction
Log phase cultures of M.tb H37Ra expressing GAPDH mCh or mCh alone were used for analysis. Cells were washed and blocked as for TEM studies and incubated with 20 μg transferrin-Alexa 488 (Tf-A488, Invitrogen) in 100 μl PBS, 1% BSA for 2 h at 4 °C. Samples were fixed in 4% buffered paraformaldehyde for 20 min and FRET analysis was carried out by the acceptor photobleaching method on a Nikon A1R confocal microscope as described previously26. The intensities of a total of 12 regions of interest from multiple, randomly selected fields were measured before and after photobleaching. The % intensity change after bleaching was calculated for both acceptor and donor signal. Statistical analysis was done by Student’s t-test.
Co-localization of GAPDH and Tf on M.tb cells by TEM
M.tb H37Ra GAPDH mCh cells were cultured to log phase, washed and blocked as described earlier for TEM samples. Aliquots of cells were then incubated with either 1:100 polyclonal rabbit α-GAPDH or an equivalent quantity of pre-immune sera for 1 h. Cells were subsequently washed and incubated with a 1:10 α-rabbit IgG 5 nm gold conjugate (Sigma) along with 4 μg Tf-gold per 100 μl PBS, 0.2% caesin for 2 h before fixation in Karnovsky’s fixative for 30 min, all incubations were carried out at 4 °C. Finally washed cells were placed on carbon-coated grids for observation in TEM.
Regulation of surface GAPDH and Tf binding on iron depletion
M.tb H37Ra cells were grown till early log phase followed by incubation with 150 μM 2,2′-Bipyridyl (Sigma) for 24 h35. Controls were maintained in Middlebrooks 7H9 media alone. Cell surface GAPDH expression and transferrin binding on intact cells was determined by ELISA56. Briefly, 2 × 107 M.tb H37Ra cells per well were incubated overnight at 4 °C in 96-well ELISA plates. Wells were blocked with PBS containing 2% BSA at 4 °C for 2 h followed by three washes with PBS containing 0.05% Tween 20. Plates were incubated with 1:50 polyclonal rabbit α-GAPDH or equivalent pre-immune sera in PBS containing 1% BSA at 4 °C for 2 h. Plates were then incubated with 1:5,000 dilution α-rabbit IgG alkaline phosphatase-conjugated antibody (Sigma) at 4 °C for 2 h and washed. Finally 50 μl per well of substrate solution, that is, 1 mg ml−1 of p-nitrophenylphosphate (Sigma) in substrate buffer (0.001 M MgCl2, 0.05 M Na2CO3, pH 9.8) was added to each well. Absorbance was measured at 405 nm after incubation for 1 h at room temperature. Background readings of pre-immune sera controls were subtracted from samples, data are plotted as fold increase as compared with controls. Statistical analysis was done using Student’s t-test, experiments were done in duplicates and repeated thrice (n=3).
To measure transferrin binding, M.tb H37Ra cells were cultured to log phase and 2 × 108 cells were used per assay. Cells were washed with PBS and blocked in PBS containing 2% BSA at 4 °C for 1 h. Cells were then incubated with 20 μg of Tf-A647 in 100 μl PBS, 1% BSA at 4 °C for 2 h. Cells were washed and finally resuspended in 200 μl PBS and plated in clear bottom black well plates (Corning). Tf-A647 fluorescence was measured using a Tecan M200 plate reader at excitation 650 nm and emission 668 nm. Background fluorescence of unstained cells was subtracted from all values, data are plotted as fold increase as compared with controls. Statistical analysis was done using Student’s t-test, experiments were done in duplicates and repeated thrice (n=3).
Cell surface enzyme activity
M.tb H37Ra, GAPDH mCh and mCh transformants were pelleted and washed with neutral buffer26. Cells were then resuspended at a concentration of 1 × 108 cells per assay tube in 200 μl assay buffer (pH 8.0) as described earlier. After 30 min of incubation at 25 °C, the OD 340 nm of cell free supernatant was recorded57.
Measurement of surface GAPDH, Tf and apo-Tf binding on M.tb
Cell surface GAPDH expression, transferrin and apotransferrin binding on intact M.tb H37Ra GAPDH-mCh and M.tb H37Ra mCh cells was determined by ELISA, essentially as described in previous experiments56. Apotransferrin (Calbiochem) was labelled with Alexa 647 dye (AnaSpec, HiLyte Fluor 647) according to the manufacturer’s protocol.
For estimation of surface GAPDH, background readings of pre-immune sera controls were subtracted from samples and data are plotted as Abs 405 nm±s.d., experiments were done in duplicates and repeated thrice (n=3). Statistical analysis was done using Student’s t-test. Tf-A647 and Apotransferrin-A647 fluorescence was measured as before, background fluorescence of unstained cells were subtracted from all the values, data are plotted as relative fluorescence units (RFU)±s.e.m., experiments were done in duplicates, thrice independently (n=3).
Measurement of transferrin-iron uptake by Tf-55Fe
M.tb H37Ra mCh and M.tb H37Ra GAPDH-mCh cells were cultured to log phase, 2 × 108 cells were used for each assay. Cells were washed twice with Sauton’s media without iron followed by incubation with the same media for 3 h at 37 °C. Cells were then washed and incubated for a further 3 h at 37 °C with media containing 50 μg of Tf-55Fe in 100 μl Sauton’s media without iron. Cells were washed thrice with iron-free media, pelleted and resuspended in 3 ml of scintillation fluid. The radioactivity associated with the cell pellet was measured using a β counter (Perkin Elmer), counts were normalized to cell number. M. smegmatis and M. smegmatis Δesx-3 were incubated for 1 h at 37 °C with media containing 50 μg of Tf-55Fe and similarly processed.
Transferrin-iron uptake by calcein fluorescence quenching
Transferrin-mediated iron uptake was assessed by a modification of the calcein-AM quenching assay58. Log phase M.tb H37Ra mCh and GAPDH-mCh transformants were washed twice with Sauton’s media lacking iron and staining was performed essentially as described previously59. Briefly, 2 × 108 cells per assay were incubated with 1 μM calcein-AM (Sigma) at 37 °C for 150 min. Cells were then washed thrice with iron-free Sauton’s media and resuspended in 100 μl of media with or without 50 μg transferrin at 4 °C or 37 °C for 6 h. Finally, cells were washed and fluorescence data from 10,000 cells per sample were acquired, using a Guava Soft Express Pro Flowcytometer. To confirm the sensitivity of the assay, M.tb H37Ra cells were pre-incubated with calcein as described above followed by incubation with Sauton’s media60 containing ferric ammonium citrate at 4 °C or 37 °C or media without iron. Data are plotted as mean fluorescence intensity (MFI)±s.e.m. of 104 cells, experiments were done in duplicates and repeated thrice (n=3), statistical significance was determined using Student’s t-test.
Affinity measurements by Microscale Thermophoresis (MST)
Human Holo-transferrin was labelled with a fluorescent dye NT-647 using Monolith NT Protein Labeling Kit RED-NHS as per manufacturer’s instructions. The concentration of the fluorescently labelled transferrin molecule was kept constant at 70 nM and the concentration of the titrant, that is, GAPDH was varied from 2 nM to 2 μM. A serial dilution of the non-labelled titrant GAPDH was prepared using a Tris saline buffer (50 mM Tris, 150 mM NaCl, pH 7.4) containing 0.05% Tween 20. Serial dilutions of the non-labelled GAPDH molecules (10 μl each) were mixed with 10 μl of the fluorescently labelled transferrin molecule. The final sample was loaded into Monolith NT.115 capillaries, followed by analysis with the Monolith NT.115 instrument (Nanotemper)61.
Determination of cell surface receptor number
Log phase M.tb H37Ra cells were washed and blocked in PBS containing 2% BSA at 4 °C for 1 h. Cells were then incubated with increasing concentrations (125 nM–6.25 μM) of Tf-A647 at 4 °C for 2 h. After washing, cells were resuspended in 200 μl PBS and plated in clear bottom black well plates (Corning).Tf-A647 bound at the cell surface was measured using a Tecan M200 multimode reader at excitation and emission wavelengths of 650 and 688 nm, respectively. Background fluorescence of unstained cells was subtracted from all the values, and the data of RFU±s.e.m. of Tf-A647 versus concentration of Tf-A647 were plotted to obtain a saturation curve using Graph Pad Prism Software version 5.01. Receptor number per cell was calculated essentially by the three-tube method62, details are provided in Supplementary Methods.
Inhibition of transferrin-GAPDH interaction by rGAPDH
To assess specificity of interaction on cells, binding of transferrin was measured after pre-blocking with recombinant M.tb GAPDH. Briefly, 2.5 μM (20 μg) of Tf-A647 was pre-incubated with increasing amounts (0.0625 to fourfold) of rGAPDH for 1 h at 4 °C. Bacilli were then incubated with the mixture for 2 h at 4 °C. Tf-A647 fluorescence was measured using a Tecan M200 plate reader at excitation 650 nm and emission 668 nm. Background fluorescence of unstained cells was subtracted from all the values. Data are plotted as % transferrin binding±s.e.m. versus log GAPDH concentration, experiments were done in duplicates and repeated four times (n=4), values of cells stained with Tf-A647 alone were considered as 100% binding.
Transferrin-gold internalization by M.tb using TEM
Log phase M.tb H37Ra cells ~6 × 109 cells, were washed twice with Sauton’s media without iron and incubated with transferrin-gold (15 μg per 150 μl of media) for 1 h at 37 °C. After washing with the same medium, cells were fixed and embedded in epoxy resin. Ultrathin sections were stained with 2% uranyl acetate and examined in TEM. As a control, cells were treated with Streptavidin-gold conjugate and processed similarly. For intact cell analysis, a suspension of fixed bacteria was applied to a carbon-coated grid and isolated bacilli labelled with Tf-gold were subjected to tomographic analysis using the JEOLTEMOGRAPHY system. A±70° tilt series was acquired at 1° intervals. After alignment of the image series a weighted face back projection was constructed using the JEOL composer software.
Internalization of Transferrin and GAPDH by M.tb
Log phase M.tb H37Ra cells (~1.5 × 1010) were washed twice with Sauton’s media without iron and incubated with 100 μg of biotinylated transferrin for 1 h at 37 °C. Subsequently cells were washed thrice and resuspended in lysis buffer. The cytosolic fraction was isolated as described earlier, mixed with 100 μl of SAPMPs and incubated for 1 h on a rotospin. Particles were washed extensively with PBS and boiled in 30 μl of Laemmli sample buffer. As a negative control, cells were incubated with biotinylated transferrin at 4 °C and were processed similarly. Captured transferrin-biotin was detected by western blotting using 1:1,000 dilution of α-transferrin rabbit polyclonal antibody (Abcam) followed by incubation with goat α-rabbit IgG-HRP and developed with TMB/H2O2 (Bangalore Genei, India). Biotinylated transferrin (Sigma) was used as molecular weight marker.
Co-trafficking of transferrin and M.tb surface proteins
Cell surface proteins of M.tb H37Ra cells, (~1.5 × 1010 per assay) were labelled using Sulfo-NHS-Biotin (Pierce) as per manufacturer’s instructions. Cells were then incubated with 100 μg of transferrin at 37 °C for 30 min to allow for internalization. After three washes cells were resuspended in lysis buffer. The cytosolic fraction was isolated as described previously63 and incubated with 100 μl of SAPMPs for 1 h on a rotospin to capture internalized biotinylated proteins. Finally, beads were resuspended in 30 μl of Laemmli sample buffer, boiled for 15 min and loaded on a 10% SDS–PAGE. Transferrin associated with internalized surface proteins was detected by western blotting as described previously. To confirm our results a reverse co-immunoprecipitation was also performed. Internalized transferrin was captured using 100 μl Protein-A paramagnetic particles (ThermoScientific) pre-incubated with 50 μg rabbit α-transferrin. Transferrin-associated GAPDH was detected by western blotting using α-GAPDH mouse polyclonal antibody at a dilution of 1:1,000.
Trafficking of transferrin to intracellular bacilli
The human macrophage cell line THP-1 was utilized as an infection model, essentially as described earlier64. In brief, to study trafficking of transferrin to bacteria resident within macrophages, THP-1 cells (2 × 105 per assay) were activated with 25 ng ml−1 PMA (Sigma) for 24 h followed by resting for additional 24 h. Cells were then shifted to antibiotic-free RPMI media containing 10% fetal calf serum. Infection was done at a ratio of 1:40 (THP-1:bacteria) using log phase cultures of M. smegmatis mCh, M. smegmatis Δesx-3 mCh, M.tb H37Ra mCh or M.tb H37Ra GAPDH-mCh. After 6 h, cells were washed with serum-free media (SFM) to remove non-phagocytosed bacteria. A second wash with SFM was carried out after 24 h of infection and residual transferrin in cells was depleted by incubation in SFM for 1 h at 37 °C65. Cells were then washed with SFM and cells were incubated with 20 μg of Tf-A647or Tf-A488 in 100 μl SFM media at 4 °C for 1 h. Subsequently, uptake of bound transferrin was done at 37 °C, 5% CO2 for 1 h, followed by washes with SFM. Finally cells were fixed with 1% paraformaldehyde for 30 min and imaged on Nikon A1R confocal microscope using a × 63 oil immersion objective and an aperture of 1 airy unit.
Transferrin internalization by intraphagosomal mycobacteria
THP-1 cells were infected with M.tb H37Ra GAPDH-mCh, M.tb H37Ra mCh, M. smegmatis mCh or M. smegmatis Δesx-3 mCh bacteria as described for microscopy experiments. Post infection, cells were washed with SFM, and ~3 × 106 cells were incubated with 50 μg of Tf-A647 in 1.0 ml of buffer for 1 h at 4 °C. Subsequently cells were shifted to 37 °C for 1 h to allow for internalization of bound transferrin. After thorough washing with SFM, intraphagosomal bacilli were isolated from macrophages essentially as described previously7. Briefly, cells were lysed with SFM containing 0.1% SDS, 1,000 units per ml DNase followed by centrifugation at 10,000 g for 10 min. Bacteria were then washed thoroughly with 0.01% SDS solution in SFM and incubated with 0.1% pronase for 15 min at 4 °C to remove any remaining surface-bound Tf-A647 (ref. 40). Isolated bacteria were analysed using a BD FACS Aria instrument, 104 bacterial cells gated for mCherry expression were analysed for the uptake of Tf-A647. Data are presented as MFI of 104 cells±s.e.m. for Tf-A647, experiments were repeated thrice (n=3). Samples were also fixed with 1% paraformaldehyde for 30 min and imaged on Nikon A1R confocal microscope using a × 100 Plan-Apo objective and 1 airy unit aperture to determine colocalization of both signals in isolated bacilli.
Interaction of GAPDH and Tf within intraphagosomal M.tb
THP-1 cells were infected with M.tb H37Ra, washed with SFM, and ~1 × 108 harvested cells were incubated with 1.0 mg of human transferrin in 1 ml of buffer for 1 h at 4 °C. Subsequently cells were incubated at 37 °C, 5% CO2 for 1 h to allow uptake of bound transferrin. Intraphagosomal bacilli were isolated as described earlier7 and cytosolic fraction was prepared as described for M.tb H37Ra cells (Supplementary Methods) The fraction was incubated with rabbit α-Tf antibody immobilized on goat α-rabbit IgG magna beads (Pierce) overnight at 4 °C on rotamixer. Particles were washed extensively and boiled in Laemmli sample buffer. As a negative control, lysate was incubated with rabbit IgG immobilized on goat α-rabbit IgG magna beads. Transferrin-associated GAPDH was detected by western blotting using α-GAPDH mouse polyclonal antibody at a dilution of 1:1,000 using Luminata Forte (Millipore) as substrate according to manufacturer’s instructions, and scanned on Image Quant (GE Healthcare).
Additional information
How to cite this article: Boradia, V. M. et al. Mycobacterium tuberculosis acquires iron by cell-surface sequestration and internalization of human holo-transferrin. Nat. Commun. 5:4730 doi: 10.1038/ncomms5730 (2014).
References
Banerjee, S., Farhana, A., Ehtesham, N. Z. & Hasnain, S. E. Iron acquisition, assimilation and regulation in mycobacteria. Infect. Genet. Evol. 11, 825–838 (2011).
Ratledge, C. Iron, mycobacteria and tuberculosis. Tuberculosis 84, 110–130 (2004).
De Voss, J. J., Rutter, K., Schroeder, B. G. & Barry, C. E. 3rd Iron acquisition and metabolism by mycobacteria. J. Bacteriol. 181, 4443–4451 (1999).
Tullius, M. V. et al. Discovery and characterization of a unique mycobacterial heme acquisition system. Proc. Natl Acad. Sci. USA 108, 5051–5056 (2011).
Wagner, D. et al. Elemental analysis of Mycobacterium avium, Mycobacterium tuberculosis, and Mycobacterium smegmatis containing phagosomes indicates pathogen-induced microenvironments within the host cell's endosomal system. J. Immunol. 174, 1491–1500 (2005).
Clemens, D. L. & Horwitz, M. A. The Mycobacterium tuberculosis phagosome interacts with early endosomes and is accessible to exogenously administered transferrin. J. Exp. Med. 184, 1349–1355 (1996).
Olakanmi, O., Schlesinger, L. S., Ahmed, A. & Britigan, B. E. Intraphagosomal Mycobacterium tuberculosis acquires iron from both extracellular transferrin and intracellular iron pools. J. Biol. Chem. 277, 49727–49734 (2002).
Olakanmi, O., Schlesinger, L. S., Ahmed, A. & Britigan, B. E. The nature of extracellular iron influences iron acquisition by Mycobacterium tuberculosis residing within human macrophages. Infect. Immun. 72, 2022–2028 (2004).
Gobin, J. & Horwitz, M. A. Exochelins of Mycobacterium tuberculosis remove iron from human iron-binding proteins and donate iron to mycobactins in the M. tuberculosis cell wall. J. Exp. Med. 183, 1527–1532 (1996).
De Voss, J. J. et al. The salicylate-derived mycobactin siderophores of Mycobacterium tuberculosis are essential for growth in macrophages. Proc. Natl Acad. Sci. USA 97, 1252–1257 (2000).
Ryndak, M. B., Wang, S., Smith, I. & Rodriguez, G. M. The Mycobacterium tuberculosis high-affinity iron importer, IrtA, contains an FAD-binding domain. J. Bacteriol. 192, 861–869 (2010).
Schaible, U. E. & Kaufmann, S. H. E. Iron and microbial infection. Nat. Rev. Microbiol. 2, 946–953 (2004).
Lambrecht, R. S. & Collins, M. T. Inability to detect mycobactin in mycobacteria-infected tissues suggests an alternative iron acquisition mechanism by mycobacteria in vivo. Microb. Pathog. 14, 229–238 (1993).
Tullius, M. V., Harth, G., Masleša-Galić, S., Dillon, B. J. & Horwitz, M. A. A replication-limited recombinant Mycobacterium bovis BCG vaccine against tuberculosis designed for human immunodeficiency virus-positive persons is safer and more efficacious than BCG. Infect. Immun. 76, 5200–5214 (2008).
Douvas, G. S., May, M. H. & Crowle, A. J. Transferrin, iron, and serum lipids enhance or inhibit Mycobacterium avium replication in human macrophages. J. Infect. Dis. 167, 857–864 (1993).
Trousseau, A. inLectures on Clinical Medicine Lindsay and Blakiston (1872).
Weinberg, E. D. The development of awareness of iron-withholding defense. Perspect. Biol. Med. 36, 215–221 (1993).
Boelaert, J. R., Vandecasteele, S. J., Appelberg, R. & Gordeuk, V. R. The effect of the host's iron status on tuberculosis. J. Infect. Dis. 195, 1745–1753 (2007).
Gangaidzo, I. T. et al. Association of pulmonary tuberculosis with increased dietary iron. J. Infect. Dis. 184, 936–939 (2001).
Isanaka, S. et al. Iron status predicts treatment failure and mortality in tuberculosis patients: a prospective cohort study from Dar es Salaam, Tanzania. PLoS ONE 7, e37350 (2012).
Modun, B. & Williams, P. The staphylococcal transferrin-binding protein is a cell wall glyceraldehyde-3-phosphate dehydrogenase. Infect. Immun. 67, 1086–1092 (1999).
Taylor, J. M. & Heinrichs, D. E. Transferrin binding in Staphylococcus aureus: involvement of a cell wall-anchored protein. Mol. Microbiol. 43, 1603–1614 (2002).
Williams, P. & Griffiths, E. Bacterial transferrin receptors—structure, function and contribution to virulence. Med. Microbiol. Immunol. 181, 301–322 (1992).
Gray-Owen, S. D. & Schyvers, A. B. Bacterial transferrin and lactoferrin receptors. Trends Microbiol. 4, 185–191 (1996).
Cottrell, J. S. & London, U. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551–3567 (1999).
Raje, C. I., Kumar, S., Harle, A., Nanda, J. S. & Raje, M. The macrophage cell surface glyceraldehyde-3-phosphate dehydrogenase is a novel transferrin receptor. J. Biol. Chem. 282, 3252–3261 (2007).
Kumar, S., Sheokand, N., Mhadeshwar, M. A., Raje, C. I. & Raje, M. Characterization of glyceraldehyde-3-phosphate dehydrogenase as a novel transferrin receptor. Int. J. Biochem. Cell Biol. 44, 189–199 (2011).
Sheokand, N. et al. Secreted glyceraldehye-3-phosphate dehydrogenase is a multifunctional autocrine transferrin receptor for cellular iron acquisition. Biochim. Biophys. Acta 1830, 3816–3827 (2013).
Pancholi, V. & Chhatwal, G. S. Housekeeping enzymes as virulence factors for pathogens. Int. J. Med. Microbiol. 293, 391–401 (2003).
Terao, Y., Yamaguchi, M., Hamada, S. & Kawabata, S. Multifunctional glyceraldehyde-3-phosphate dehydrogenase of Streptococcus pyogenes is essential for evasion from neutrophils. J. Biol. Chem. 281, 14215–14223 (2006).
Maeda, K. et al. Glyceraldehyde-3-phosphate dehydrogenase of Streptococcus oralis functions as a coadhesin for Porphyromonas gingivalis major fimbriae. Infect. Immun. 72, 1341–1348 (2004).
Jin, H., Song, Y. P., Boel, G., Kochar, J. & Pancholi, V. Group A streptococcal surface GAPDH, SDH, recognizes uPAR/CD87 as its receptor on the human pharyngeal cell and mediates bacterial adherence to host cells. J. Mol. Biol. 350, 27–41 (2005).
Bermudez, L. E., Petrofsky, M. & Shelton, K. Epidermal growth factor-binding protein in Mycobacterium avium and Mycobacterium tuberculosis: a possible role in the mechanism of infection. Infect. Immun. 64, 2917–2922 (1996).
Kenworthy, A. K. Imaging protein-protein interactions using fluorescence resonance energy transfer microscopy. Methods 24, 289–296 (2001).
Siegrist, M. S. et al. Mycobacterial Esx-3 is required for mycobactin-mediated iron acquisition. Proc. Natl Acad. Sci. USA 106, 18792–18797 (2009).
Fu, J., Momčilović, I. & Prasad, P. V. Roles of protein synthesis elongation factor EF-Tu in heat tolerance in plants. J. Botany 2012, 835836 (2012).
Piatigorsky, J. Gene Sharing and Evolution: the Diversity of Protein Functions Harvard Univ. Press (2009).
Wool, I. G. Extraribosomal functions of ribosomal proteins. Trends Biochem. Sci. 21, 164–165 (1996).
Sirover, M. A. On the functional diversity of glyceraldehydes-3-phosphate dehydrogenase: biochemical mechanisms and regulatory control. Biochim. Biophy. Acta 1810, 741–751 (2011).
Modun, B., Kendall, D. & Williams, P. Staphylococci express a receptor for human transferrin: identification of a 42-kilodalton cell wall transferrin-binding protein. Infect. Immun. 62, 3850–3858 (1994).
Berredo-Pinho, M. et al. Proteomic profile of culture filtrate from the Brazilian vaccine strain Mycobacterium bovis BCG Moreau compared to M. bovis BCG Pasteur. BMC Microbiol. 11, 80–91 (2011).
Malen, H., Pathak, S., Softeland, T., de Souza, G. & Wiker, H. Definition of novel cell envelope associated proteins in Triton X-114 extracts of Mycobacterium tuberculosis H37Rv. BMC Microbiol. 10, 132–142 (2010).
Malen, H., Berven, F. S., Fladmark, K. E. & Wiker, H. G. Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv. Proteomics 7, 1702–1718 (2007).
Bell, C., Smith, G. T., Sweredoski, M. J. & Hess, S. Characterization of the Mycobacterium tuberculosis proteome by liquid chromatography mass spectrometry-based proteomics techniques: a comprehensive resource for tuberculosis research. J. Proteome Res. 11, 119–130 (2012).
Gunawardena, H. P. et al. Comparison of the membrane proteome of virulent Mycobacterium tuberculosis and the attenuated Mycobacterium bovis BCG vaccine strain by label-free quantitative proteomics. J. Proteome Res. 12, 5463–5474 (2013).
Nombela, C., Gil, C. & Chaffin, W. L. J. Non-conventional protein secretion in yeast. Trends Microbiol. 14, 15–21 (2006).
Cleves, A. E., Cooper, D. N., Barondes, S. H. & Kelly, R. B. A new pathway for protein export in Saccharomyces cerevisiae. J. Cell. Biol. 133, 1017–1026 (1996).
Sassetti, C. M., Boyd, D. H. & Rubin, E. J. Genes required for mycobacterial growth defined by high density mutagenesis. Mol. Microbiol. 48, 77–84 (2003).
Luo, M., Fadeev, E. A. & Groves, J. T. Mycobactin-mediated iron acquisition within macrophages. Nat. Chem. Biol. 1, 149–153 (2005).
McNamara, M., Tzeng, S.-C., Maier, C., Zhang, L. & Bermudez, L. E. Surface proteome of ‘Mycobacterium avium subsp. hominissuis’ during the early stages of macrophage infection. Infect. Immun. 80, 1868–1880 (2012).
He, Z. & De Buck, J. Cell wall proteome analysis of Mycobacterium smegmatis strain MC2 155. BMC Microbiol. 10, 121–130 (2010).
Lonhienne, T. G. A. et al. Endocytosis-like protein uptake in the bacterium Gemmata obscuriglobus. Proc. Natl. Acad. Sci. USA 107, 12883–12888 (2010).
Neutra, M. R., Ciechanover, A., Owen, L. S. & Lodish, H. F. Intracellular transport of transferrin-and asialoorosomucoid-colloidal gold conjugates to lysosomes after receptor-mediated endocytosis. J. Histochem. Cytochem. 33, 1134–1144 (1985).
Cooper, H. M. & Patterson, Y. inCurrent Protocols in Immunology eds Coligan J. E., Bierer B. E., Margulies D. H., Shevach E. M., Strober W. John Wiley & Sons, Inc. (2008).
Nelson, D. et al. pH-regulated secretion of a glyceraldehyde-3-phosphate dehydrogenase from Streptococcus gordonii FSS2: purification, characterization, and cloning of the gene encoding this enzyme. J. Dent. Res. 80, 371–377 (2001).
Glatman-Freedman, A., Martin, J. M., Riska, P. F., Bloom, B. R. & Casadevall, A. Monoclonal antibodies to surface antigens of Mycobacterium tuberculosis and their use in a modified enzyme-linked immunosorbent spot assay for detection of mycobacteria. J. Clin. Microbiol. 34, 2795–2802 (1996).
Pancholi, V. & Fischetti, V. A. A major surface protein on Group A Streptococci is a glyceraldehyde-3-phosphate-dehydrogenase with multiple binding activity. J. Exp. Med. 176, 415–426 (1992).
Epsztejn, S., Kakhlon, O., Glickstein, H., Breuer, W. & Cabantchik, Z. I. Fluorescence analysis of the labile iron pool of mammalian cells. Anal. Biochem. 248, 31–40 (1997).
Comas-Riu, J. & Vives-Rego, J. Use of calcein and SYTO-13 to assess cell cycle phases and osmotic shock effects on E. coli and Staphylococcus aureus by flow cytometry. J. Microbiol. Methods 34, 215–221 (1999).
Chen, J. M., Alexander, D. C., Behr, M. A. & Liu, J. Mycobacterium bovis BCG vaccines exhibit defects in alanine and serine catabolism. Infect. Immun. 71, 708–716 (2003).
Wienken, C. J., Baaske, P., Rothbauer, U., Braun, D. & Duhr, S. Protein-binding assays in biological liquids using microscale thermophoresis. Nat. Commun. 1, 100 (2010).
Grogan, W. M. & Collins, J. M. Guide to Flow Cytometry Methods CRC (1990).
Rezwan, M., Lanéelle, M.-A., Sander, P. & Daffé, M. Breaking down the wall: fractionation of mycobacteria. J. Microbiol. Methods 68, 32–39 (2007).
Theus, S. A., Cave, M. D. & Eisenach, K. D. Activated THP-1 cells: an attractive model for the assessment of intracellular growth rates of Mycobacterium tuberculosis isolates. Infect. Immun. 72, 1169–1173 (2004).
McGraw, T. E. & Subtil, A. inCurrent Protocols in Cell Biology eds Bonifacino J. S., Dasso M., Harford J. B., Lippincott-Schwartz J., Yamada K. M. John Wiley & Sons, Inc. (2001).
Acknowledgements
We are grateful to Professor P. Guptasarma, IISER, Mohali and Dr M. Jerabek-Willemsen, NanoTemper Technologies GmbH, Munich, for the generous time spent in discussions and facilities provided for affinity experiments. Mr Ranvir Singh, Mr Anil Theophilus and Dr S. Pawar are acknowledged for skilful assistance with experiments. The help of Mr SS Bawa, IMTECH, Chandigarh is gratefully acknowledged. Thanks are due to Mr. Janaki Raghu Ram for assistance with enzyme assays. V.M.B., B.V., J.S.T. and P.P. were recipients of research fellowships provided by NIPER, SAS Nagar. H.M. and A.S.C. are recipients of UGC and DBT research fellowships, respectively. N.S. and P.S. are recipients of CSIR research fellowships. The financial support provided by the Department of Biotechnology (DBT), Government of India and the Department of Science and Technology, Government of India (DST) grants is sincerely acknowledged.
Author information
Authors and Affiliations
Contributions
C.I.R. and M.R. initiated the project. C.I.R., M.R., V.M.B., H.M. and N.S. designed the experiments and analysed the data. V.M.B., H.M. and N.S. contributed to data acquisition for tomography and infection experiments, V.A.T. performed FRET and assisted in TEM experiments. V.M.B., H.M., N.S., A.S.C. and P.S. performed experiments for affinity measurements. V.M.B., J.S.T, B.V. and P.P. contributed to reagent preparation and to all other experiments. C.I.R., M.R. and V.B. contributed to manuscript preparation. C.I.R. and M.R. wrote the manuscript.
Corresponding authors
Ethics declarations
Competing interests
The authors declare no competing financial interests.
Supplementary information
Supplementary Figures, Methods and References
Supplementary Figures 1-7, Supplementary Methods and Supplementary References (PDF 28447 kb)
Supplementary Movie 1
Tomography of intact M.tb cells indicates the presence of internalized transferrin labelled gold nano particles within the cytoplasm (MOV 2976 kb)
Rights and permissions
About this article
Cite this article
Boradia, V., Malhotra, H., Thakkar, J. et al. Mycobacterium tuberculosis acquires iron by cell-surface sequestration and internalization of human holo-transferrin. Nat Commun 5, 4730 (2014). https://doi.org/10.1038/ncomms5730
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/ncomms5730
This article is cited by
-
Targeted nano-delivery of chemotherapy via intranasal route suppresses in vivo glioblastoma growth and prolongs survival in the intracranial mouse model
Drug Delivery and Translational Research (2023)
-
Host glyceraldehyde-3-phosphate dehydrogenase-mediated iron acquisition is hijacked by intraphagosomal Mycobacterium tuberculosis
Cellular and Molecular Life Sciences (2022)
-
Nutritional immunity: the impact of metals on lung immune cells and the airway microbiome during chronic respiratory disease
Respiratory Research (2021)
-
Cholesterol-dependent transcriptome remodeling reveals new insight into the contribution of cholesterol to Mycobacterium tuberculosis pathogenesis
Scientific Reports (2021)
-
Electrically and magnetically resonant dc-SQUID metamaterials
Applied Physics A (2017)
Comments
By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.