Abstract
The carbon skeleton of ecologically and pharmacologically important iridoid monoterpenes is formed in a reductive cyclization reaction unrelated to canonical terpene cyclization. Here we report the crystal structure of the recently discovered iridoid cyclase (from Catharanthus roseus) bound to a mechanism-inspired inhibitor that illuminates substrate binding and catalytic function of the enzyme. Key features that distinguish iridoid synthase from its close homolog progesterone 5β-reductase are highlighted.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
Change history
11 May 2018
In the version of this article originally published, the grant number given for funding by the European Research Council was R20359 instead of 311363. The error has been corrected in the HTML and PDF versions of the paper.
References
Dobler, S., Petschenka, G. & Pankoke, H. Phytochemistry 72, 1593–1604 (2011).
Birkett, M.A. & Pickett, J.A. Phytochemistry 62, 651–656 (2003).
Tundis, R., Loizzo, M.R., Menichini, F., Statti, G.A. & Menichini, F. Mini Rev. Med. Chem. 8, 399–420 (2008).
Viljoen, A., Mncwangi, N. & Vermaak, I. Curr. Med. Chem. 19, 2104–2127 (2012).
Dinda, B., Debnath, S. & Banik, R. Chem. Pharm. Bull. (Tokyo) 59, 803–833 (2011).
Geu-Flores, F. et al. Nature 492, 138–142 (2012).
O'Connor, S.E. & Maresh, J.J. Nat. Prod. Rep. 23, 532–547 (2006).
Lindemann, P. Steroids 10.1016/j.steroids.2015.08.007 (14 August 2015).
Kavanagh, K.L., Jörnvall, H., Persson, B. & Oppermann, U. Cell. Mol. Life Sci. 65, 3895–3906 (2008).
Gärtner, D.E., Wendroth, S. & Seitz, H.U. FEBS Lett. 271, 239–242 (1990).
Caspi, E. & Lewis, D.O. Science 156, 519–520 (1967).
Bjelic, S. et al. ACS Chem. Biol. 8, 749–757 (2013).
Kunert, M. et al. ChemBioChem 14, 353–360 (2013).
Thorn, A. et al. J. Biol. Chem. 283, 17260–17269 (2008).
Lindner, S., Geu-Flores, F., Bräse, S., Sherden, N.H. & O'Connor, S.E. Chem. Biol. 21, 1452–1456 (2014).
Garrabou, X., Beck, T. & Hilvert, D. Angew. Chem. Int. Edn Engl. 54, 5609–5612 (2015).
Rudolph, K., Bauer, P., Schmid, B., Mueller-Uri, F. & Kreis, W. Biochimie 101, 31–38 (2014).
Winberg, J.O., Brendskag, M.K., Sylte, I., Lindstad, R.I. & McKinley-McKee, J.S. J. Mol. Biol. 294, 601–616 (1999).
Petersen, J. et al. J. Biomol. Struct. Dyn. 10.1080/07391102.2015.1088797 (12 October 2015).
Lovell, S.C. et al. Proteins 50, 437–450 (2003).
Munkert, J. et al. Plant Biol. 10.1111/plb.12361 (14 July 2015).
Munkert, J. et al. Mol. Plant 8, 136–152 (2015).
Christianson, D.W. Chem. Rev. 106, 3412–3442 (2006).
Cane, D.E. & Ikeda, H. Acc. Chem. Res. 45, 463–472 (2012).
Berrow, N.S. et al. Nucleic Acids Res. 35, e45 (2007).
Kabsch, W. Acta Crystallogr. D Biol. Crystallogr. 66, 125–132 (2010).
Evans, P.R. & Murshudov, G.N. Acta Crystallogr. D Biol. Crystallogr. 69, 1204–1214 (2013).
McCoy, A.J. et al. J. Appl. Crystallogr. 40, 658–674 (2007).
Emsley, P., Lohkamp, B., Scott, W.G. & Cowtan, K. Acta Crystallogr. D Biol. Crystallogr. 66, 486–501 (2010).
Winn, M.D., Murshudov, G.N. & Papiz, M.Z. Methods Enzymol. 374, 300–321 (2003).
Joosten, R.P. et al. J. Appl. Crystallogr. 42, 376–384 (2009).
Painter, J. & Merritt, E.A. J. Appl. Crystallogr. 39, 109–111 (2006).
Chen, V.B. et al. Acta Crystallogr. D Biol. Crystallogr. 66, 12–21 (2010).
Krissinel, E. & Henrick, K. Computational Life Sciences (Springer-Verlag, Berlin, Heidelberg, 2005).
Leaver-Fay, A. et al. Methods Enzymol. 487, 545–574 (2011).
Acknowledgements
Funds were made available by the European Research Council (ERC 311363) and a BBSRC Institute Strategic Programme grant (MET; BB/J004561/1) to S.E.O'C., and an SNF Early Postdoc Mobility Fellowship to H.K. The Diamond Light Source provided access to beamlines I03, I04 and I04-1 (proposal MX9475).
Author information
Authors and Affiliations
Contributions
L.C., H. K., N.H.S., F.G.-F., and S.E.O'C. designed the project; L.C., H.K., M.O.K., and F.G.-F. performed molecular cloning/enzyme assays; C.E.M.S. assisted with crystallization and X-ray data acquisition; H.K., F.G.-F., and N.H.S. performed chemical synthesis; H.K., L.C., and D.M.L. refined structures; S.E.O'C. supervised the work; H.K. and S.E.O'C. wrote the manuscript.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing financial interests.
Supplementary information
Supplementary Text and Figures
Supplementary Tables 1–4 and Supplementary Figures 1–14. (PDF 6518 kb)
Rights and permissions
About this article
Cite this article
Kries, H., Caputi, L., Stevenson, C. et al. Structural determinants of reductive terpene cyclization in iridoid biosynthesis. Nat Chem Biol 12, 6–8 (2016). https://doi.org/10.1038/nchembio.1955
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/nchembio.1955
This article is cited by
-
Biosynthesis of catharanthine in engineered Pichia pastoris
Nature Synthesis (2023)
-
Biosynthesis, natural distribution, and biological activities of acyclic monoterpenes and their derivatives
Phytochemistry Reviews (2023)
-
A multisubstrate reductase from Plantago major: structure-function in the short chain reductase superfamily
Scientific Reports (2018)
-
P450s controlling metabolic bifurcations in plant terpene specialized metabolism
Phytochemistry Reviews (2018)
-
The occurrence of progesterone 5β-reductase is not limited to the angiosperms: a functional gene was identified in Picea sitchensis and expressed in Escherichia coli
New Zealand Journal of Forestry Science (2016)