Abstract
The resident human skin microbiome is responsible for the production of most of the human scents that are attractive to mosquitoes. Hence, engineering the human skin microbiome to synthesize less of mosquito attractants or produce repellents could potentially reduce bites and prevent the transmission of deadly mosquito-borne pathogens. In order to further characterize the human skin volatilome, we quantified the major volatiles of 39 strains of skin commensals (Staphylococci and Corynebacterium). Importantly, to validate the behavioral activity of these volatiles, we first assessed landing behavior triggered by human skin volatiles. We demonstrated that landing behavior is gated by the presence of carbon dioxide and L-(+)-lactic acid. This is similar to the combinatorial coding triggering mosquito short range attraction. Repellency behavior to selected skin volatiles and terpenes was tested in the presence of carbon dioxide and L-(+)-lactic acid. In a 2-choice landing behavior context, the skin volatiles 2- and 3-methyl butyric acids reduced mosquito landing by 62.0–81.6% and 87.1–99.6%, respectively. Similarly, the terpene geraniol was capable of reducing mosquito landing behavior by 74.9%. We also tested the potential repellency effects of terpenes in mosquitoes at short-range using a 4-port olfactometer. In these assays, geraniol reduced mosquito attraction (69–78%) to a mixture of key human kairomones carbon dioxide, L-(+)-lactic acid, and ammonia. These findings demonstrate that carbon dioxide and L-(+)-lactic acid change the valence of other skin volatiles towards mosquito landing behavior. Moreover, this study offers candidate odorants to be targeted in a novel strategy to reduce attractants or produce repellents by the human skin microbiota that may curtail mosquito bites, and subsequent mosquito-borne disease.
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Introduction
Mosquitoes are one of the biggest threats to human morbidity and mortality around the world due to their exceptional ability to transmit pathogens, including viruses, malaria parasites, and filarial worms. As the number of mosquito vectors resistant to commercial insecticides1 and vector-borne pathogens gaining resistance to best-in-class drugs2,3 has increased in recent years1, innovative strategies to prevent mosquito bites and pathogen transmission are critical. Ideally, such strategies should protect against the bites of multiple mosquito vectors. Amongst potential new strategies to prevent mosquito bites are the development of safer, affordable, and globally accessible mosquito repellents4,5. Current strategies aim to disrupt the mosquito chemosensory system using gene editing tools6,7,8 and spreading these loss of function mutants into wild populations9 with some success. With the human skin being the source of numerous attractive odorants, alternative strategies that reduce the production of attractive odorants and/or increase the production of repellents by the human skin might also potentially reduce mosquito bites and pathogen transmission10,11.
Synthetic mosquito repellents such as DEET and picaridin are effective at preventing mosquito bites 12. However, DEET can cause health issues12, is unaffordable for widespread use13, and requires reapplication within hours12. In order to find alternative mosquito repellents, chemoinformatics4 and machine learning approaches5 have been used to interrogate chemical databases for molecules structurally similar to known repellents. A few of these candidate repellents have been shown to repel fruit flies14; however, these candidates are yet to be shown effective against mosquitoes.
In the absence cheap, safe, and effective tools to control mosquito populations and prevent bites, the advent of genome editing technologies opened the way for the development of mosquitoes with impaired host seeking behavior. Multiple mosquito chemosensory receptor genes have been modified to encode non-functional receptors, aiming at disrupting host seeking behavior. Genes encoding olfactory coreceptors orco6,15, Ir25a16, Ir76b16, and Ir8a8, carbon dioxide coreceptor Gr37,8,17, heat receptors TripA118, and Ir21a19, and a humidity sensor co-receptor Ir93a20 have been disrupted; nonetheless, these gene mutations were not sufficient to completely abrogate mosquito host seeking activity6,7,8,19. Whether manipulating the activity of higher order neurons can effectively disrupt mosquito host seeking behavior21, it has yet to be determined.
The human scent emitted by the skin is produced by the microbiome resident in hair follicles and sweat glands22. Human sweat glands belong to three distinct classes, eccrine, apocrine, and sebaceous, which secrete amino acids, fatty acids, and salts, that are used as nutrients by the skin microbiome22. The metabolization of these nutrients leads to the release of small molecules, such as L-( +)-lactic acid, ammonia, and short- and middle chain carboxylic acids23, which synergizes with carbon dioxide in breath as well as body heat and humidity as attractants to anthropophilic mosquitoes10. Hence, one possibility to reduce the production of mosquito attractive cues is to manipulate the prominent commensals of the human skin microbiome24 to reduce the attractants and, potentially, include microbes that have been engineered to synthesize repellents not normally found in the skin microbiota10,11.
As a first step toward the possibility of engineering the human skin microbiome to reduce mosquito bites, we aimed to first address the contributions of skin commensals to mosquito behavior by 1) quantifying key metabolites/volatiles produced during growth in skin like media conditions, 2) determining the impact of a subset of skin commensal derived volatiles in Aedes aegypti landing behavior, and 3) evaluate the potential of a terpene to reduce A. aegypti attraction. In light of recent advances in engineering tools available for Staphylococci and Corynebacterium, these findings set the stage for a novel approach to reducing mosquito attraction through direct modifications of skin commensals found on human skin.
Results
Quantifying key volatiles produced by Staphylococci and Corynebacterium skin commensal isolates
Mosquito attractive volatiles originate from the human skin microbiome24. Staphylococci and Corynebacterium are frequently amongst the top ten isolated and identified human skin commensals, with Staphylococcus epidermidis being considered one of 31 “core” human skin commensals around the world25. By GC/MS, we sought to build a profile of these volatiles produced by stationary phase Staphylococci and Corynebacterium grown in microaerophilic conditions at pH 5.5 (similar to the human skin26), as a representative of volatile production in a skin like environment. We collected 39 strains of publicly available skin commensal bacteria (20 Staphylococci and 19 Corynebacterium) (Fig. 1). Interestingly, we found lactic acid and acetic acid to be the most abundantly produced volatile in both Staphylococci and Corynebacterium cultures (Fig. 1). Lactic acid is the most well described mosquito attractant emanating from humans27, with nearly all of the highest producers found in the Staphylococci genera (Fig. 1). Of the odorants quantified, we chose to test lactic acid and acetic acid, for their high abundance (Fig. 1), and 2-methyl butyrate due to their known impact in mosquito short range behavior10, for further mosquito behavior evaluation.
Skin odorants synergize to evoke mosquito landing behavior
In order to evaluate the potential of chemical volatiles to reduce mosquito landing behavior, we set up a behavioral arena (Fig. 2A) where female A. aegypti had a choice between meshes coated with different odorants placed on opposite sides of the cages (Fig. 2A). Mosquito activity (time spent on each side of the experimental arena) was tracked and recorded using animal tracking at millisecond resolution (Fig. 2B). Carbon dioxide was applied in all experiments. Mosquito landing behavior was first evaluated against the human skin produced odorant and known mosquito attractant L-( +)-lactic acid27(Fig. 2C and Suppl. Figure S1A). Mosquitoes showed stronger attraction to L-( +)-lactic acid at 0.1% (88.9% attraction; Suppl. Figure S1A) and 0.05% (84.3% attraction; Fig. 2C) than to the water-coated mesh. Mosquitoes still showed attraction at 0.001% (86.2% attraction; Suppl. Figure S1A) and repellency at the lowest concentration tested (0.0001%, 75.4% repellency; Suppl. Figure S1A).
As short range y-tube olfactometer experiments indicate that L-( +)-lactic acid along with carbon dioxide gates mosquito attraction and synergize with other skin volatiles28,29,30, we evaluated mosquito landing behavior against other skin volatiles in the presence of L-( +)-lactic acid at 0.05% and carbon dioxide (Fig. 2D–G and Suppl. Figure S1B). Acetic acid, a known human skin volatile22, evoked mosquito attraction or repellency in a concentration dependent manner (Fig. 2D). Whereas at the highest and lowest concentrations, acetic acid evoked repellency behavior (97.4% and 89.6% repellency, respectively), this odorant triggers attraction at 0.01% (66.2% attraction; Fig. 2D). Similarly, octanal, another skin volatile22,31, evoked repellency at the two highest concentrations tested (46.5% and 80.6% repellency), but induced landing at 0.0001% concentration (85.1% attraction; Fig. 2E). The evaluation of mosquito landing behavior in the presence of acetic acid or octanal but in the absence of L-( +)-lactic acid resulted in little to null odor induced behavior (Fig. 3). Altogether, these experiments demonstrated that the synergism between skin odorants and L-( +)-lactic acid and carbon dioxide is also applied in a landing behavior context.
Odorants that reduce mosquito landing behavior
Another odorant isolated from human sweat, 3-methyl butyric acid29 has been shown to induce repellency29 or be inert32 contingent upon the assay used (y-tube olfactometer or traps). This odorant, along with another skin bacteria volatile33 structurally similar (2-methyl-butyric acid), was evaluated for landing behavior in the presence of carbon dioxide and L-( +)-lactic acid (Fig. 4A,B). In a landing behavior context, 2-methyl butyric acid induced attraction at the highest concentration tested (56.4% attraction; Fig. 4A) but acted as a repellent at all the other concentrations tested (62.0–81.6% repellency range; Fig. 4A). Despite their similar chemical structures, 3-methyl butyric acid evoked repellency at the three highest concentrations (87.1–99.6% repellency; Fig. 4B), but it was inert at the other two concentrations (Fig. 4B).
After demonstrating 2-methyl- and 3-methyl butyric acids evoked consistent repellency behavior in the landing context (Fig. 4A,B), we evaluated whether other natural odorants could also prevent mosquito landing. As terpenes are commercialized as mosquito repellents 34, we assessed if geraniol could also reduce mosquito landing behavior in the presence of carbon dioxide and L-( +)-lactic acid. Geraniol induced landing at the lowest concentration tested (77.7% attraction; Fig. 4C) and repelled mosquitoes from landing on L-( +)-lactic acid-coated mesh at the highest concentration tested (74.9% repellency; Fig. 4C). These experiments indicated that geraniol could also be used as a mosquito repellent.
Skin volatiles synergize with L-( +)-lactic acid and carbon dioxide in short range attraction behavior
Even though geraniol reduces mosquito landing behavior, other synthetic repellents like DEET and picaridin are effective at preventing mosquito landing35. However, the low volatility (vapor pressure) of these synthetic repellents prevents them from acting effectively at short range12. Terpenes, on the other hand, exhibit higher volatility than synthetic repellents35, which can potentialize the repellency effects provided by the topical application of synthetic repellents. In order to assess the potential of geraniol and other terpenes as short range mosquito repellents, we used a 4-port-olfactometer36(Fig. 5A) that allows mosquitoes to perform most (if not all) host-seeking behavior steps, such as activation, up-wind flight, orientation, and landing (near but not on the odorant source).
In order to demonstrate that the 4-port olfactometer can be used to assess short range mosquito behavior and establish positive controls for attraction and repellency, we assessed different combinations of human skin odorants (Fig. 5A–E). Initially, we tested mosquito attraction to four different doses of either L-( +)-lactic acid (Fig. 5B) or ammonia (Fig. 5C) at 1% concentration in the presence of carbon dioxide. The presence of such odorants alone did not evoke a statistically significant improvement in mosquito attraction compared to carbon dioxide alone (Fig. 5B,C). In contrast, combinations of L-( +)-lactic acid (5 µL) and three different doses of ammonia increased mosquito attraction when compared to carbon dioxide alone (40.3–64.9% attraction improvement; Fig. 5D). Addition of acetic acid at three different doses to a combination of L-( +)-lactic acid (5 µL) and ammonia (10 µL) synergistically improved mosquito attraction (60.6–77.1% attraction improvement; Fig. 5E). These findings corroborate previous studies using y-tube olfactometers30, and validated a blend of L-( +)-lactic acid (5 µL), ammonia (10 µL), and carbon dioxide as an human-derived attractive cue for the following mosquito repellency assays.
Selected terpene reduces mosquito attraction at short range
As 2-methyl butyric acid was shown to consistently prevent mosquito landing at multiple concentrations (Fig. 2F), we first assessed whether 2-methyl butyric acid could also evoke mosquito repellency in the 4-port olfactometer. This odorant significantly reduced mosquito attraction to carbon dioxide, L-( +)-lactic acid, and ammonia at all doses (Fig. 5F). As geraniol also reduced mosquito landing behavior (Fig. 4C), we assessed the potential of this terpene to reduce mosquito attraction at short range. Geraniol showed statistically significant reduced mosquito attraction at all doses when compared to carbon dioxide, L-( +)-lactic acid, and ammonia (69.2–77.9% repellency range, Fig. 5G).
Discussion
The human skin is covered with different sweat glands that are localized in different areas of the body23. Whereas the eccrine glands are distributed all over the body, apocrine glands are localized in the moist regions of the body (groin and axilla), and sebaceous glands are more localized to the face and torso (sebaceous areas23). Different bacteria species of the human resident skin microbiome are associated with such glands, which release different types of biomolecules used by the bacteria as nutrients10,26. Upon the metabolism of these nutrients, the small molecules released are highly attractive to mosquitoes37.
The behavioral effects of the human kairomones carbon dioxide, L-( +)-lactic acid, and ammonia together gating mosquito short-distance attraction and trap catching for both Anopheles gambiae38,39 and A. aegypti7,30 mosquitoes have been well established. In the absence of L-( +)-lactic acid and/or ammonia, mosquito attraction to carbon dioxide is not induced by the other carboxylic acids secreted by the human skin7,27,38. In this study, we demonstrated that a similar principle also governs landing behavior, as landing behavior to specific human skin odorants such as acetic acid and octanal was abrogated in the absence of L-( +)-lactic acid. Our findings also pointed out that specific skin odorants, such as 3-methyl butyric acid, can also repel mosquito landing behavior, as it has been demonstrated for short distance attraction29,38. We have also assessed the effects of the terpene geraniol in the context of short range attraction to a blend of human kairomones, which was capable of reducing mosquito attraction. Whether or not these findings can be extended to other strains of A. aegypti, including field mosquitoes, needs to be investigated.
Altogether, these findings point to multiple targets of the skin microbiome that can be genetically manipulated to reduce the synthesis of important odorants that govern mosquito landing behavior. The biosynthetic pathway that synthesizes L-( +)-lactic acid stands as a main target, as this odorant is produced at very high levels by the human skin bacteria, and we and others7,30 have shown that this odorant gates (along with carbon dioxide) the mosquito short range attraction and landing behaviors evoked by other skin odorants. Knocking down the synthesis of ammonia seems also to be a good strategy as this odorant is even more important than L-( +)-lactic acid to gate behavioral responses of the mosquito Anopheles coluzzii38,39. Another interesting target is a gene associated with the acetic acid-producing pathway, as this odorant is also produced at high levels by skin microbes and synergizes the mosquito behavioral responses triggered by L-( +)-lactic acid and ammonia. Alternatively, using genetic tools to induce the synthesis of repulsive odorants might potentially reduce mosquito bites. Making the human scent attractive has the potential to divert anthropophilic mosquitoes to feed upon other animals, reducing pathogen transmission and disease burden.
Materials and methods
Culturing skin commensal bacteria
All bacterial strains were stored at − 80 °C in 25% glycerol until experimentation. To grow strains for GC/MS quantification, strains were first plated on BHI + 1% Tween agar plates (1.5% agar) and grown for 1 (Staphylococci) or 2 days (Corynebacterium) aerobically at 37 °C, at which point approximately 1 µL of cell material was transferred into 10 mL prewarmed BHI + 1% Tween at pH 5.5 broth in a 15 mL conical tube. The conical tube was screwed tight, and cultures were incubated at 37 °C for 1 (Staphylococci) or 2 (Corynebacterium) days to reach stationary phase growth.
GC/MS analysis of skin commensal cultures
For analysis of commensal supernatant, 1 mL of stationary phase bacterial culture was centrifuged at 13,000×g for 10 min at room temperature. 400 µL of extraction solution (20 µL 10 mM n-crotonic acid in water as internal standard, 100 µL 6 N HCl, 280 µL ddH2O), 100 µL of cell-free supernatant, and 500 µL diethyl ether were added together in beads tube. In parallel, standards were created to facilitate quantification by adding 100 µL of SCFAs mix solution (ranging from 5000 µM to 0.5 µM, series of half dilution) into 400 µL of extraction solution (20 µL 10 mM n-crotonic acid in water as internal standard, 100 µL 6 N HCl, 280 µL ddH2O) and 500 µL diethyl ether in beads tube.
Using a QIAGEN Tissue Lyser II, samples were mixed at 25/s for 10 min. The resulting homogenates were subjected to centrifugation at 18,000×g for 10 min, organic layer, and transferred to a new glass vial (29,391-U, Supelco) for derivatization. This was achieved by first taking 100 µL of diethyl ether extract and mixing with 10 µL MTBSTFA and incubated at room temperature for 2 h. 1 µL of the derivatized samples were analyzed using a 7890B GC System (Agilent Technologies), and 5973 Network Mass Selective Detector (Agilent Technologies). Derivatized samples were analyzed using the following chromatography conditions for GC–MS: Column: HP-5MS, 30 m, 0.25 mm, 0.25 µm; Injection Mode: splitless; Temperature Program: 40 °C for 0.1 min; 40–70 °C at 5 °C/min, hold at 70 °C for 3.5 min; 70–160 °C at 20 °C/min; 160–325 °C at 35 °C/min, equilibration for 3 min. One µL of each sample was injected and analyte concentrations were quantified by comparing their peak area standards created using pure representatives.
Synthetic chemical volatiles and odorant dilutions
Synthetic odorants were purchased from Sigma-Aldrich unless otherwise specified at the highest purity. Odorants were diluted in either molecular grade water or paraffin oil (PO) to 1% v/v before use. Geraniol (> 97% pure, CAS: 106-24-1); L-( +)-lactic acid (88–92%, CAS: 79-33-4); Ammonia (25%, CAS: 1336-21-6); Paraffin oil (pure, CAS: 8012-95-1), Acetic acid (> 99.7%, CAS: 64-19-7); 2-methylbutyric acid (98%, CAS: 116-53-0); 3-methylbutyric acid (99%, CAS: 503-74-2); Octanal (99%, CAS: 124-13-0); Butyric acid (> 99%, CAS: 107-92-6); Propionic acid (> 99.5%, CAS: 79-09-4); Formic acid (> 98%, CAS: 64-18-6); Valeric acid (> 99%, CAS: 109-52-4); Isobutyric acid (> 99.5%, CAS: 79-31-2).
Mosquito maintenance and starvation
Aedes aegypti Liverpool strain mosquitoes were raised and maintained according to40. Briefly, mosquito larvae were reared in deionized water, fed on TetraMin fish food and 10% sucrose solution ad libitum, at larval and adult stages, respectively. Seven to 21 days old nulliparous females were sorted into groups of 25 specimens, transferred to the releasing canister of the olfactometers (described below), and starved for 5–8 h without water at 28 °C and 70% relative humidity (RH).
Mosquito behavioral assay—2-choice landing assay
Mosquito landing assays were performed in Bugdorms (30 × 30 × 30 mosquito cages) inside a mosquito incubator (Caron, Marietta OH). For filming, one of the sides of the cage was replaced by a transparent plastic pane secured with white Duck tape. Odorants or solvents (water or PO) were applied (600 μL) onto white polyester nets (10 × 10 cm; Bioquip CAT#7250A) laying on a glass Petri dish and hanging onto the opposite lateral side of the bug dorm using push pins. For overlay experiments, L-( +)-lactic acid-coated mesh along with another mesh coated with the tested odorant were hung on the experimental cage with the L-( +)-lactic acid mesh in contact with the cage. On the opposite side, an L-( +)-lactic acid-coated mesh was hung along with a solvent-coated mesh. The positions of the control mesh and the tested odorant mesh were switched amongst trial replicates. Pure carbon dioxide was delivered using a fly pad placed face down onto the experimental cages.
On the day before the experiments were performed, 16 mated nulliparous mosquitoes were transferred to individual bug dorms and starved overnight with deionized water. The behavior trials were carried out on the next day between 1–5 pm, and videos were recorded for 5 min after the first minute upon switching the carbon dioxide regulator on.
Mosquito behavioral assay—high-throughput (HT) olfactometer
Short range mosquito behavioral assays were performed with the 4-port high-throughput olfactometer36. Room temperature and humidity were maintained at 27.5 °C and 60% relative humidity using space heaters and humidifiers. Purified air was pumped into the system at 24,367 mL/min rate, whereas pure CO2 was flown at 254 mL/min (final concentration per lane ~ 1500–2000 ppm). Starved mosquitoes were exposed to air only for 10 min, when odorants and/or bacterial cultures were placed in the odor chamber onto 47 mm plastic Petri dishes (Fisherbrand), and CO2 gauge was switched on. The gates of the releasing canisters were open, and the behavioral assays were carried out for 20 min. Then, both the releasing canister and the trap gates were closed, and the number of mosquitoes in the releasing canisters, flight tubes, and traps were scored. The tested odorants and cultures were switched amongst the 4-port olfactometer across trial replicates. Dose–response assays were carried out to determine the doses of chemicals and/or bacterial cultures that evoked the strongest behavioral responses. Doses of 1 μL, 5 μL, 10 μL, 25 μL were tested.
Video recording of behavioral activity
For the 2-choice assay, videos of mosquito activity were recorded with an iPhone X at 30 fps. Videos were then analyzed with the EthoVision XT software (Noldus) at millisecond resolution and using individual mosquito tracking. Only experiments whereby at least 40% of the mosquitoes (mosquito participation threshold) were active and tracked were analyzed.
Behavior apparatus cleaning
All equipment used in behavior assays was soaked overnight (small parts) or washed thoroughly (flight tubes) with scent-free laundry detergent (Seventh Generation, free & clear) and rinsed with tap water thoroughly.
Statistical analyses
Graphs and statistical analyses were performed with the R software. For both 2-choice landing and 4-port olfactometer experiments, time spent on each side of the experimental cages and the number of mosquitoes caught by the traps were transformed into percentages so as to normalize for mosquito participation variability across experimental replicates. Shapiro–Wilk normality test was used to assess whether or not the data fit a normal distribution. For pairwise comparisons, either the Welsh t-test or Wilcoxon rank sum test were used. For multiple comparisons, either ANOVA or Kruskal–Wallis’s rank sum test were applied. These tests were followed by post-hoc analyses using Tukey multiple comparisons of means and Wilcoxon rank sum test, respectively. p-values were adjusted (p-adjusted) for multiple comparisons using the Benjamini–Hochberg procedure. All raw and analyzed data, as well as the R code, can be found in the Supplementary Table S1.
Ethical approval and informed consent
All animals were handled in accordance with the Guide for the Care and Use of Laboratory Animals as recommended by the National Institutes of Health and approved by the UCSD Institutional Animal Care and Use Committee (IACUC, Animal Use Protocol #S17187) and UCSD Biological Use Authorization (BUA #R2401).
Data availability
All data generated or analyzed during this study are included in this published article and its supplementary information files.
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Acknowledgements
We thank Judy Ishikawa and Ava Stevenson for helping with mosquito husbandry and Rhodri Edwards for critically reading the manuscript. This work was supported by funding from a DARPA contract (HR00112020030) and NIH grants (RO1AI148300, RO1AI175152, RO1AI151004) awarded to O.S.A. The views, opinions, and/or findings expressed are those of the authors and should not be interpreted as representing the official views or policies of the U.S. government.
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O.S.A. conceptualized the project. IC-A and JAM designed the experiments. IC-A and OJ carried out behavior assays. KA performed GC-MS experiments. IC-A, RR, and JAM analyzed and compiled the data. All authors contributed to the writing and approved the final manuscript.
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O.S.A is a founder of Agragene, Inc. and Synvect, Inc. with equity interest. The terms of this arrangement have been reviewed and approved by the University of California, San Diego, in accordance with its conflict of interest policies. All other authors declare no competing interests.
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Coutinho-Abreu, I.V., Jamshidi, O., Raban, R. et al. Identification of human skin microbiome odorants that manipulate mosquito landing behavior. Sci Rep 14, 1631 (2024). https://doi.org/10.1038/s41598-023-50182-5
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DOI: https://doi.org/10.1038/s41598-023-50182-5
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