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Decoupling the spread of grasslands from the evolution of grazer-type herbivores in South America
It has been thought that the evolution of mammals similar to modern grass-eating horses in South America ∼38 million years ago was a response to the spread of grasslands. This study uses microscopic plant silica fossils from southern Argentina to show that these presumed grass-eating mammals evolved in forests, not grasslands.
- Caroline A.E. Strömberg
- , Regan E. Dunn
- & Alfredo A. Carlini
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Developmental evidence for serial homology of the vertebrate jaw and gill arch skeleton
It is generally believed that jaws evolved from a gill arch, but this is unsupported by palaeontological or developmental data. Gillis et al. study three gnathostome taxa and identify a conserved molecular mechanism that delineates the dorsal and ventral skeletal segments of the jaw, hyoid and gill arches.
- J. Andrew Gillis
- , Melinda S. Modrell
- & Clare V. H. Baker
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Article
| Open AccessGenome of the Chinese tree shrew
The Chinese tree shrew, Tupaia belangeri chinensis, has been proposed as a potential animal model in biomedical research and drug safety testing. This study presents the full genome of the Chinese tree shrew, identifying common features between the tree shrew and primates.
- Yu Fan
- , Zhi-Yong Huang
- & Yong-Gang Yao
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Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity
Trichoplaxis the most primitive multicellular animal on Earth and thus provides insight into the earliest stages of evolution. Delving deep into the proteome, Heck and colleagues observe a burst in tyrosine phosphorylation, confirming the hypothesis that at the onset of this new communication system a surplus of phosphorylation took place.
- Jeffrey H. Ringrose
- , Henk W.P. van den Toorn
- & Albert J.R. Heck
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Reduced plumage and flight ability of a new Jurassic paravian theropod from China
Feathered dinosaurs from the Middle-Late Jurassic of north-eastern China have recently been described. Here, a new paravian dinosaur, characterized by less extensive feathers on its limbs and tail, shows that the plumage of theropods was already diversified and adapted to different ecological niches by the Late Jurassic.
- Pascal Godefroit
- , Helena Demuynck
- & Philippe Claeys
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Gender identification of the Mesozoic bird Confuciusornis sanctus
Specimens of the Early Cretaceous bird C. sanctuswith ornamental tail feathers are commonly interpreted as male, and those without as female. In this study, in support of this theory, medullary bone—a tissue unique to reproductively active female birds—is found in a specimen without ornamental feathers.
- Anusuya Chinsamy
- , Luis M. Chiappe
- & Zhang Fengjiao
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The oldest echinoderm faunas from Gondwana show that echinoderm body plan diversification was rapid
The oldest echinoderm faunas have previously been restricted to North America and had a radiate body plan. This discovery of echinoderms from Morocco reveals a diverse range of body forms just 15 million years after echinoderms first evolved a calcite skeleton, showing a rapid rate of morphological evolution.
- Andrew B. Smith
- , Samuel Zamora
- & J. Javier Álvaro
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Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes
The ribosomal stalk L12 is the only multi-copy protein in the ribosome and is essential for translation. Here Davydov et al.use a bioinformatics and mass spectrometry approach to study the evolution of L12 in bacterial ribosomes and predict its stoichiometry in a wide range of species.
- Iakov I. Davydov
- , Ingo Wohlgemuth
- & Marina V. Rodnina
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| Open AccessTransgenerational gene silencing causes gain of virulence in a plant pathogen
Plant pathogens encode effector proteins that trigger immunity in plants carrying appropriate resistance genes. Here Qutob et al. show non-Mendelian interactions between naturally occurring Phytophthora sojaealleles that result in transgenerational gene silencing and gain of virulence in soybean plants.
- Dinah Qutob
- , B. Patrick Chapman
- & Mark Gijzen
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Extensive diversification of IgH subclass-encoding genes and IgM subclass switching in crocodilians
Different mechanisms for generating antibody diversity have evolved since the emergence of immunoglobulin genes in jawed vertebrates. By sequencing the crocodilian immunoglobulin heavy-chain locus, Chenget al. uncover new insights into the evolutionary origins of adaptive immunity.
- Gang Cheng
- , Yang Gao
- & Yaofeng Zhao
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Fossil pollen records reveal a late rise of open-habitat ecosystems in Patagonia
The rise of open-habitat ecosystems in southern South America is thought to have occurred with the spread of hypsodont mammals 26 million years ago. In this study, the fossil record of plants preserved in Patagonia suggests that open-habitat ecosystems emerged 15 million years later than previously assumed.
- Luis Palazzesi
- & Viviana Barreda
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| Open AccessCambrian lobopodians and extant onychophorans provide new insights into early cephalization in Panarthropoda
Lobopodians include stem-group arthropods and panarthropods, and date back to the early Cambrian. Ou et al. describe specimens of the early Cambrian lobopodian Onychodictyon ferox, revealing new head structures such as modified appendages, eyes, a terminal mouth and a sucking pharynx.
- Qiang Ou
- , Degan Shu
- & Georg Mayer
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Repeated evolution in overlapping mimicry rings among North American velvet ants
In Müllerian mimicry two or more harmful species share a similar appearance for mutual benefit. This study identifies a large Müllerian mimicry complex in North American velvet ants, where 65 species mimic each other through shared colour patterns gained as the result of independent evolution.
- Joseph S. Wilson
- , Kevin A. Williams
- & James P. Pitts
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Reprogramming to pluripotency is an ancient trait of vertebrate Oct4 and Pou2 proteins
The mammalian transcription factors Oct4 and Pou2 are implicated in germ cell pluripotency induction and maintenance. Tapia and colleagues find that axolotl Pou2 and Oct4 reprogram mouse and human fibroblasts to a pluripotent state, suggesting ancestral Oct4 and Pou2 gene function is evolutionarily conserved.
- Natalia Tapia
- , Peter Reinhardt
- & Hans R. Schöler
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Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme
Enzymes are traditionally viewed as being highly specific for their substrates. Tokuriki et al.follow the accumulation of mutations during the laboratory evolution of a phosphotriesterase into an arylesterase, and postulate that many naturally occurring enzymes may not be optimal for their substrates.
- Nobuhiko Tokuriki
- , Colin J. Jackson
- & Dan S. Tawfik
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| Open AccessGenome sequences of wild and domestic bactrian camels
Camels are essential means of transport in deserts, but we know little about the biology of these extraordinary mammals. This study reports the genome sequences of the wild and domestic bactrian camel, offering a glimpse into the camels’ genetic adaptation to harsh environments.
- Jirimutu
- , Zhen Wang
- & He Meng
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The earliest known stem-tetrapod from the Lower Devonian of China
Our understanding of the evolutionary sequence of tetrapod characters is hindered by a limited fossil record of primitive finned tetrapods. This study reports a new stem-tetrapod from ~409 million years ago, which displays morphological features shared by tetrapods and lungfishes, and extends the earliest record of tetrapods by ~10 million years.
- Jing Lu
- , Min Zhu
- & Tuo Qiao
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| Open AccessEvolution of the human-specific microRNA miR-941
miRNAs simultaneously regulate a range of genes, making them potential master players in evolution. Huet al.identify a human-specific miRNA called miR-941, whose copy number remains polymorphic in modern humans, and show that miR-941 is expressed in the brain and could regulate important signalling pathways.
- Hai Yang Hu
- , Liu He
- & Philipp Khaitovich
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The convergent evolution of defensive polyacetylenic fatty acid biosynthesis genes in soldier beetles
Soldier beetles use a polyacetylenic fatty acid to repel avian predators and protect their eggs. Haritoset al. find that three genes in soldier beetles convert oleic acid to a precursor of 8Z-dihydromatricaria acid—the first eukaryotic genes reported to produce conjugated polyacetylenic fatty acids.
- Victoria S. Haritos
- , Irene Horne
- & Mats Hamberg
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| Open AccessThe genetic prehistory of southern Africa
Hunter-gatherer populations in Africa preserve unique information about human history, but genetic sub-structures of these populations remain unclear. Using newly designed microarray and statistical methods, these authors analyse genetic compositions of southern African populations and reveal an ancient link between southern and eastern Africa.
- Joseph K. Pickrell
- , Nick Patterson
- & Brigitte Pakendorf
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Phylogenetic constraints on ecosystem functioning
It has been proposed that phylogenetic diversity can be used as a proxy to estimate functional diversity and to predict ecosystem functioning. Here, the rapid evolutionary response of marine bacteria is used to study the positive effects of evolutionary history and species diversity on ecosystem productivity.
- Dominique Gravel
- , Thomas Bell
- & Nicolas Mouquet
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Insight into the early evolution of the avian sternum from juvenile enantiornithines
The keeled sternum is a distinct skeletal element in extant birds. In this study, specimens of juvenile extinct birds—Enantiornithes—from the Early Cretaceous show a unique sequence of development in the sternum, suggesting differences between living birds and this extinct clade.
- Xiaoting Zheng
- , Xiaoli Wang
- & Zhonghe Zhou
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Genetic architecture supports mosaic brain evolution and independent brain–body size regulation
It has been controversial whether the sizes of different regions of the brain can evolve independently of each other. This study identifies genetic loci responsible for independent size regulation in different brain regions, and finds brain size to be regulated independently of body size.
- Reinmar Hager
- , Lu Lu
- & Robert W. Williams
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Dynamic evolution of venom proteins in squamate reptiles
The evolution of venom toxins is an area of intense study but has been hampered by the lack of non-toxin protein homologues. Here, phylogenetic analyses of non-toxin genes sourced from transcriptomic studies are found placed within groups of venom toxins, revealing dynamic changes in the sites of toxin expression.
- Nicholas R. Casewell
- , Gavin A. Huttley
- & Wolfgang Wüster
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| Open AccessEmergence of stable polymorphisms driven by evolutionary games between mutants
Mutation, selection and random drift determine evolutionary dynamics and can give rise to polymorphisms. Here, an evolutionary game model, in which each new mutation generates a new evolutionary game, is applied to study the emergence of polymorphism, resulting in higher diversity than seen in previous models.
- Weini Huang
- , Bernhard Haubold
- & Arne Traulsen
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Unfavourable environment limits social conflict in Yuhina brunneiceps
Ecological factors impact cooperative and competitive behaviour, creating social conflict. Here, predictions from a game-theory model together with observations of Taiwan yuhinas—a joint-nesting species where group members are unrelated—show that these birds are more cooperative in unfavourable environmental conditions.
- Sheng-Feng Shen
- , Sandra L. Vehrencamp
- & Hsiao-Wei Yuan
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| Open AccessEvolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues
Gene paralogues generated during whole-genome duplication events often display distinct tissue expression. In this study, the distinct expression of thepax2 and pax8 paralogues is shown to be governed by the addition of a silencer in the proximal promoter of pax8that limits its tissue expression.
- Haruki Ochi
- , Tomoko Tamai
- & Hajime Ogino
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Molecular preservation of the pigment melanin in fossil melanosomes
Putative fossil melanosomes have been reported but, because their shape and size correspond well with those of bacteria, further evidence is required to confirm their identity. This study reports evidence of melanin in association with melanosome-like microbodies in an argentinoid fish eye from the early Eocene.
- Johan Lindgren
- , Per Uvdal
- & Volker Thiel
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| Open AccessThe Eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2
Mitochondrial dynamics and trafficking are important for providing energy for neuron function. In this study, the Armadillo repeat containing proteins clustered on the X chromosome are shown to be highly expressed in the nervous system and have a role in mitochondrial dynamics.
- Guillermo López-Doménech
- , Román Serrat
- & Eduardo Soriano
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Dinosaur morphological diversity and the end-Cretaceous extinction
Dinosaurs became extinct 65 million years ago due to volcanism and a bolide impact, but whether their numbers were already declining is still not clear. This study calculates the morphological disparity of seven dinosaur subgroups, showing that at least some groups were in a long-term decline before the extinction.
- Stephen L. Brusatte
- , Richard J. Butler
- & Mark A. Norell
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| Open AccessBats host major mammalian paramyxoviruses
The large virus family,Paramyxoviridae, includes several human and livestock viruses. This study, testing 119 bat and rodent species distributed globally, identifies novel putative paramyxovirus species, providing data with potential uses in predictions of the emergence of novel paramyxoviruses in humans and livestock.
- Jan Felix Drexler
- , Victor Max Corman
- & Christian Drosten
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Earliest known coelacanth skull extends the range of anatomically modern coelacanths to the Early Devonian
The coelacanth body plan can be traced to the late Middle Devonian, but the group's early history is unclear due to a limited fossil record. This study presents the earliest known coelacanth skull (Euporosteus yunnanensissp. nov.), extending the chronological range of anatomically modern coelacanths by 17 million years.
- Min Zhu
- , Xiaobo Yu
- & Liantao Jia
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| Open AccessNew insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
The Tyrolean Iceman is 5,300 years old and his mitochondrial genome has been previously sequenced. This study reports the full genome sequence of the Iceman and reveals that he probably had brown eyes, was at risk for coronary disease and may have been infected with the pathogen Lyme borreliosis.
- Andreas Keller
- , Angela Graefen
- & Albert Zink
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| Open AccessStochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution
GALgenes enhance their own transcription via the transcription factor Gal4p, and the number of Galp4 sites in a promoter is expected to strengthen the feedback. In this study, Hsuet al. show that instead the feedback loops are activated by genes that have frequent bursts of expression and fast RNA decay kinetics.
- Chieh Hsu
- , Simone Scherrer
- & Attila Becskei
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Emergent neutrality leads to multimodal species abundance distributions
Empirical data suggest that species abundance distributions can have multiple modes, which is not predicted by existing theories. This study shows that the multimodal pattern is consistent with emergent neutrality, suggesting this theory could have a role in shaping natural communities.
- Remi Vergnon
- , Egbert H. van Nes
- & Marten Scheffer
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| Open AccessLoss of flight promotes beetle diversification
The loss of flight in some insect lineages may promote allopatric differentiation and result in a high speciation rate. Here, using the carrion beetle, loss of flight is shown to accelerate allopatric speciation with higher genetic differentiation than for flight-capable species.
- Hiroshi Ikeda
- , Masaaki Nishikawa
- & Teiji Sota
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New evidence on the colour and nature of the isolated Archaeopteryx feather
Archaeopteryxcombined features of reptiles and birds, but the colour of its feathers has remained unclear. In this study, based on data from fossilized colour-imparting melanosomes, an isolated feather specimen fromArchaeopteryxis predicted to be black, providing clues to its plumage colour and function.
- Ryan M. Carney
- , Jakob Vinther
- & Jörg Ackermann
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The genetic origin and history of speed in the Thoroughbred racehorse
A genetic variation in the horsemyostatingene is found at a very high frequency in the best Thoroughbred sprinters. This study shows, using molecular and pedigree data from modern and historic horses, that a single introduction of the variant occurred at the foundation stages of the Thoroughbred from a British native mare.
- Mim A. Bower
- , Beatrice A. McGivney
- & Emmeline W. Hill
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| Open AccessRapid and adaptive evolution of MHC genes under parasite selection in experimental vertebrate populations
In vertebrates parasite-mediated selection is thought to maintain polymorphism in MHC genes where specific resistance MHC alleles increase under emerging selection. Here, experimental evidence is shown from six stickleback fish populations that varying parasite selection helps maintain MHC polymorphism.
- Christophe Eizaguirre
- , Tobias L. Lenz
- & Manfred Milinski
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River-margin habitat of Ardipithecus ramidus at Aramis, Ethiopia 4.4 million years ago
The habitat where early humans, hominins, lived provides information about the early part of human evolution. In this study, sedimentological and stable carbon and oxygen isotope data suggest homininArdipithecus ramiduslived in a river-margin forest in a wooded grassland landscape at Aramis, Ethiopia.
- M. Royhan Gani
- & Nahid D. Gani
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Evolution of the base of the brain in highly encephalized human species
Encephalization—increase of brain size relative to body size—has occurred in two distinct evolutionary lineages; Neanderthals and modern humans. However, the 3D endocranial surface shape analysis reported here reveals unique structures at the base of the brain inHomo sapiens, which may have contributed to learning and social capacities.
- Markus Bastir
- , Antonio Rosas
- & Jean-Jacques Hublin
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| Open AccessThe evolution of sensory divergence in the context of limited gene flow in the bumblebee bat
Populations of the same species living in different habitats can differ in sensory traits driving speciation, but it is not known if this variation limits gene flow. Here, a genetic and acoustic study of the bumblebee bat suggests that geographic distance, instead of echolocation divergence, limits gene flow.
- Sébastien J. Puechmaille
- , Meriadeg Ar Gouilh
- & Emma C. Teeling
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Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae
In this study, fossils from the Late Cretaceous period in India are described and are assigned to the rice tribe based on phylogenetic comparison of morphological traits with modern grasses; these findings suggest that the evolutionary origins of the grass family, Poaceae, occurred earlier than previously thought.
- V. Prasad
- , C.A.E. Strömberg
- & A. Sahni
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| Open AccessA segmental genomic duplication generates a functional intron
The appearance of a new intron that splits an exon without disrupting the corresponding peptide sequence is a rare event in vertebrate genomes. Hellstenet al.demonstrate that, under certain circumstances, a functional intron can be produced in a single step by segmental genomic duplication.
- Uffe Hellsten
- , Julie L. Aspden
- & Daniel S. Rokhsar
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Anatomically modern Carboniferous harvestmen demonstrate early cladogenesis and stasis in Opiliones
Harvestmen — Opiliones — are an ancient and diverse arachnid group with a limited fossil record. Here, X-ray micro-tomography of fossils reveals two new Carboniferous harvestmen species, allowing a phylogenetic analysis of these Palaeozoic Opiliones, demonstrating similarities between the fossils and extant groups.
- Russell J. Garwood
- , Jason A. Dunlop
- & Mark D. Sutton
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| Open AccessA stem-group cnidarian described from the mid-Cambrian of China and its significance for cnidarian evolution
The origin of Cnidaria—coral and jellyfish—is still unsolved in the basal metazoan phylogeny. Here, a Cambrian fossil of a stem-group cnidarian,Cambroctoconus orientalisgen. et sp. nov., is found to bear octoradial symmetry, but no jelly-like mesenchyme, suggesting this evolved after octoradial symmetry.
- Tae-yoon Park
- , Jusun Woo
- & Duck K. Choi
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| Open AccessMesozoic retroposons reveal parrots as the closest living relatives of passerine birds
Zebra finches are passerine birds, but their phylogenetic relationship with non-passerine birds remains controversial. By examining retroposon insertion loci in avian genomes, the authors reveal that parrots are the closest relatives of passerines, which may have implications for understanding the evolution of birdsong.
- Alexander Suh
- , Martin Paus
- & Jürgen Schmitz
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The evolution of antisocial punishment in optional public goods games
Antisocial punishment, where non-cooperators punish cooperators, is a puzzling empirical phenomenon missing from most theoretical models. Here, antisocial punishment is added to an optional public goods game, revealing that evolution favours antisocial punishment and punishment does not promote cooperation.
- David G. Rand
- & Martin A. Nowak
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Monogamy and haplodiploidy act in synergy to promote the evolution of eusociality
Why some species have evolved to produce sterile individuals working for the benefit of others has yet to be fully explained. Now, a mathematical model of the dynamics of insect colony foundation, growth and death shows that monogamy and haplodiploidy facilitate the evolution of this societal structure.
- Lutz Fromhage
- & Hanna Kokko
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