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| Open AccessCharacterization of PANoptosis-related genes and the immune landscape in moyamoya disease
- Zhenyu Zhou
- , Yanru Wang
- & Rong Wang
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| Open AccessUrinary metabolomic profiling of a cohort of Colombian patients with systemic lupus erythematosus
- Alejandra Rojo-Sánchez
- , Ada Carmona-Martes
- & Lisandro A. Pacheco-Lugo
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| Open AccessEssentiality, protein–protein interactions and evolutionary properties are key predictors for identifying cancer-associated genes using machine learning
- Amro Safadi
- , Simon C. Lovell
- & Andrew J. Doig
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| Open AccessTowards accurate indel calling for oncopanel sequencing through an international pipeline competition at precisionFDA
- Binsheng Gong
- , Samir Lababidi
- & Joshua Xu
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| Open AccessBioBBC: a multi-feature model that enhances the detection of biomedical entities
- Hind Alamro
- , Takashi Gojobori
- & Xin Gao
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| Open AccessApplication of machine learning for identification of heterotic groups in sunflower through combined approach of phenotyping, genotyping and protein profiling
- Danish Ibrar
- , Shahbaz Khan
- & Abdel-Rhman Z. Gaafar
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| Open AccessExtend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project
- Binsheng Gong
- , Dan Li
- & Joshua Xu
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| Open AccessAn evaluation of the replicability of analyses using synthetic health data
- Khaled El Emam
- , Lucy Mosquera
- & Alaa El-Hussuna
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| Open AccessPlasma extracellular vesicle microRNAs reflecting the therapeutic effect of the CBP/β-catenin inhibitor PRI-724 in patients with liver cirrhosis
- Mayu Yoshida
- , Juntaro Matsuzaki
- & Kiminori Kimura
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| Open AccessVirtuousPocketome: a computational tool for screening protein–ligand complexes to identify similar binding sites
- Lorenzo Pallante
- , Marco Cannariato
- & Marco A. Deriu
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| Open AccessIdentifying microRNAs associated with tumor immunotherapy response using an interpretable machine learning model
- Dong-Yeon Nam
- & Je-Keun Rhee
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| Open AccessA multi-source molecular network representation model for protein–protein interactions prediction
- Hai-Tao Zou
- , Bo-Ya Ji
- & Xiao-Lan Xie
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Article
| Open AccessThe minimum energy required to build a cell
- Edwin Ortega-Arzola
- , Peter M. Higgins
- & Charles S. Cockell
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| Open AccessAnalysis of flavonoid metabolism of compounds in succulent fruits and leaves of three different colors of Rosaceae
- Chen Yang
- , Nan Sun
- & Xiang Shen
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| Open AccessA hybrid ResNet-ViT approach to bridge the global and local features for myocardial infarction detection
- Junaid Abdul Wahid
- , Xu Mingliang
- & Lei Shi
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| Open AccessChoice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses
- Asier Fernández-Pato
- , Trishla Sinha
- & Alexander Kurilshikov
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| Open AccessRiceProteomeDB (RPDB): a user-friendly database for proteomics data storage, retrieval, and analysis
- Dong U Woo
- , Yejin Lee
- & Yang Jae Kang
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Article
| Open AccessImaging mass cytometry analysis of Becker muscular dystrophy muscle samples reveals different stages of muscle degeneration
- Patricia Piñol-Jurado
- , José Verdú-Díaz
- & Jordi Díaz-Manera
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Article
| Open AccessAcute gastrointestinal permeability after traumatic brain injury in mice precedes a bloom in Akkermansia muciniphila supported by intestinal hypoxia
- Anthony J. DeSana
- , Steven Estus
- & Kathryn E. Saatman
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| Open AccessRefined preferences of prioritizers improve intelligent diagnosis for Mendelian diseases
- Xiao Yuan
- , Jieqiong Su
- & Qiang Gong
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Article
| Open AccessDEEPOMICS FFPE, a deep neural network model, identifies DNA sequencing artifacts from formalin fixed paraffin embedded tissue with high accuracy
- Dong-hyuk Heo
- , Inyoung Kim
- & Seong-Eui Hong
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Article
| Open AccessDeciphering the role of alternative splicing as a potential regulator in fat-tail development of sheep: a comprehensive RNA-seq based study
- Mohammad Reza Bakhtiarizadeh
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| Open AccessIdentification and prioritisation of potential vaccine candidates using subtractive proteomics and designing of a multi-epitope vaccine against Wuchereria bancrofti
- Murali Aarthy
- , G. Navaneetha Pandiyan
- & Bhavna Gupta
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| Open AccessBacterial community and diversity in the rumen of 11 Mongolian cattle as revealed by 16S rRNA amplicon sequencing
- Yijiu Jia
- , Yali Shi
- & Huiyan Qiao
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Article
| Open AccessDeveloping a prognosis and chemotherapy evaluating model for colon adenocarcinoma based on mitotic catastrophe-related genes
- Yinglei Liu
- , Yamin Zhao
- & Hongjian Chen
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| Open AccessA universal tool for marine metazoan species identification: towards best practices in proteomic fingerprinting
- Sven Rossel
- , Janna Peters
- & Pedro Martínez Arbizu
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| Open AccessNMGMDA: a computational model for predicting potential microbe–drug associations based on minimize matrix nuclear norm and graph attention network
- Mingmin Liang
- , Xianzhi Liu
- & Lei Wang
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| Open AccessA transcriptomic analysis of skeletal muscle tissues reveals promising candidate genes and pathways accountable for different daily weight gain in Hanwoo cattle
- Sunirmal Sheet
- , Sun Sik Jang
- & Dahye Kim
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| Open AccessAssociation of Visfatin gene polymorphism with obesity related metabolic disorders among Pakistani population: a case control study
- Sayyada Humaira Masood
- , Taseer Ahmed Khan
- & Mehir un Nisa Iqbal
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| Open AccessExploring the hemicellulolytic properties and safety of Bacillus paralicheniformis as stepping stone in the use of new fibrolytic beneficial microbes
- Serigne Inssa Ngom
- , Soufiane Maski
- & Christel Béra-Maillet
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| Open AccessBrain multi-contrast, multi-atlas segmentation of diffusion tensor imaging and ensemble learning automatically diagnose late-life depression
- Kostas Siarkos
- , Efstratios Karavasilis
- & Antonios Politis
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| Open AccessFunctional alterations and predictive capacity of gut microbiome in type 2 diabetes
- Nihar Ranjan Dash
- , Mohammad T. Al Bataineh
- & Karine Clément
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| Open AccessA protein–protein interaction analysis tool for targeted cross-linking mass spectrometry
- Jongham Park
- , Ahrum Son
- & Hyunsoo Kim
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| Open AccessBenchmarking DNA isolation methods for marine metagenomics
- Alina Demkina
- , Darya Slonova
- & Artem Isaev
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| Open AccessVisualization and data exploration of chromosome conformation capture data using Voronoi diagrams with v3c-viz
- Alan M. Race
- , Alisa Fuchs
- & Ho-Ryun Chung
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| Open AccessIdentification of ITPR1 gene as a novel target for hsa-miR-34b-5p in non-obstructive azoospermia: a Ca2+/apoptosis pathway cross-talk
- Bahareh Maleki
- , Parastoo Modarres
- & Sadeq Vallian
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| Open AccessExploration of the role of oxidative stress-related genes in LPS-induced acute lung injury via bioinformatics and experimental studies
- Yuanshui Liu
- , Huamei Li
- & Pinhua Pan
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| Open AccessA pan-cancer analysis of anti-proliferative protein family genes for therapeutic targets in cancer
- Siming Zhang
- , Jue Gu
- & Aiguo Shen
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| Open AccessSignature methods for brain-computer interfaces
- Xiaoqi Xu
- , Darrick Lee
- & Raphaëlle N. Roy
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| Open AccessIn silico drug repurposing carvedilol and its metabolites against SARS-CoV-2 infection using molecular docking and molecular dynamic simulation approaches
- Chunye Zhang
- , Jiazheng Liu
- & Ming Yang
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| Open AccessPepCNN deep learning tool for predicting peptide binding residues in proteins using sequence, structural, and language model features
- Abel Chandra
- , Alok Sharma
- & Abdul Sattar
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| Open AccessMESIA: multi-epigenome sample integration approach for precise peak calling
- Seung Gwa Park
- , Woo-Jin Kim
- & Hyun-Mo Ryoo
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| Open AccessA multiplexed RT-PCR assay for nanopore whole genome sequencing of Tilapia lake virus (TiLV)
- Jérôme Delamare-Deboutteville
- , Watcharachai Meemetta
- & Saengchan Senapin
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| Open AccessAlgorithmic assessment of shoulder function using smartphone video capture and machine learning
- David M. Darevsky
- , Daniel A. Hu
- & Brian T. Feeley
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| Open AccessSeven chromatin regulators as immune cell infiltration characteristics, potential diagnostic biomarkers and drugs prediction in hepatocellular carcinoma
- Jin-wen Chai
- , Xi-wen Hu
- & Yu-na Dong
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| Open AccessInsights into next generation sequencing guided antibody selection strategies
- M. Frank Erasmus
- , Fortunato Ferrara
- & Andrew R. M. Bradbury
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| Open AccessIdentification of ONECUT3 as a stemness-related transcription factor regulating NK cell-mediated immune evasion in pancreatic cancer
- Haojun Shi
- , Yiusing Tsang
- & Hok Leong Chin
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| Open AccessRNA modification regulator DDC in endometrial cancer affects the tumor microenvironment and patient prognosis
- Huai Zhao
- , Chuang Shi
- & Fangmei Li
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| Open AccessGeneToCN: an alignment-free method for gene copy number estimation directly from next-generation sequencing reads
- Fanny-Dhelia Pajuste
- & Maido Remm