Research articles

The development and validation of computational methods for geometry-guided de novo design of tandem repeat protein architectures.

A spectroscopic comparison of ten hot-Jupiter exoplanets reveals that the difference between the planetary radius measured at optical and infrared wavelengths allows atmosphere types ranging from clear to cloudy to be distinguished; the difference in radius at a given wavelength correlates with the spectral strength of water at that wavelength, suggesting that haze obscures the signal from water.

Epithelial tuft cells are shown to be the source of intestinal interleukin (IL)-25 that is required for activation of type 2 innate lymphoid cells (ILC2s), ILC2-regulated tuft and goblet cell expansion, and control of parasite infection.

The FOXO transcription factor, DAF-16, is required for the long-life phenotype of daf-2 mutant nematode worms; here the authors find that daf-2 mutant worms maintain neuronal functions and behaviours with age by using a set of transcriptional targets that are distinct from previously identified canonical FOXO/DAF-16-regulated targets.

Central spindle asymmetry, generated by the kinesin Klp10A and its antagonist Patronin, polarizes endosome motility and provides a mechanism for the asymmetric segregation of signalling endosomes observed in a variety of asymmetrically dividing cell types.

The dwarf planet (1) Ceres, the largest object in the main asteroid belt, is found to have localized bright areas on its surface; particularly interesting is a bright pit on the floor of the crater Occator that exhibits what is likely to be water ice sublimation, producing crater-bound haze clouds with a diurnal rhythm.

Infrared spectra of (1) Ceres acquired at distances of 82,000 to 4,300 kilometres from the surface indicate widespread ammoniated phyllosilicates; the presence of ammonia suggests that material from the outer Solar System was incorporated into Ceres.

The conversion of hydrocarbons to produce high-quality diesel fuel can be catalysed by bifunctional materials that contain a metal site and an acid site; it has been assumed that these sites should be as close as possible in order to enhance catalysis, but it is now shown that having them too close together can be detrimental to selectivity.

In metre-sized rock specimens, rock friction starts to decrease at a much smaller work rate than in centimetre-sized rock specimens, thus demonstrating that rock friction is scale-dependent.

A mechanism for the repression of homologous recombination in G1, the stage of the cell cycle preceding replication, is determined; the critical aspects are the interaction between BRCA1 and PALB2–BRCA2, and suppression of DNA-end resection.

Genetic engineering in mice reveals that autophagy is not an essential mechanism in myeloid cells for controlling Mycobacterium tuberculosis infection, and that autophagy factor ATG5 protects organisms by regulating neutrophil influx and tissue damage.

The magnitude of global precipitation increase predicted by climate models has a large uncertainty that has been difficult to constrain, but much of the range in predictions is now shown to arise from shortcomings in the modelling of atmospheric absorption of shortwave radiation; if the radiative transfer algorithms controlling the absorption were more accurate, the model spread would narrow and the mean estimate could be about 40% lower.

Innate lymphoid cells increase the growth of mouse intestinal organoids via IL-22 production; recombinant IL-22 promotes growth of both mouse and human organoids, and promotes mouse intestinal stem cell (ISC) expansion and ISC-driven organoid growth via a STAT3-dependent pathway and independently of Paneth cells; IL-22 treatment in vivo enhances the recovery of ISCs from intestinal injury.

Neutrophils are shown to have a role in driving the metastasis of breast cancer cells to the lung, with neutrophil-derived leukotrienes promoting metastatic initiation in the lung by expanding the sub-pool of cancer cells with high tumorigenic potential.

A mechanism for the repression of homologous recombination in G1, the stage of the cell cycle preceding replication, is determined; the critical aspects are the interaction between BRCA1 and PALB2–BRCA2, and suppression of DNA-end resection.

Nanoscale radiative heat transfer between both dielectric and metal surfaces separated by gaps as small as two nanometres is characterized by large gap-dependent heat transfer enhancements that are accurately modelled by the theoretical framework of fluctuational electrodynamics and has important implications for technological design.

The identification of an enzymatic system repairing proteins containing oxidized methionine in the bacterial cell envelope, a compartment particularly susceptible to oxidative damage by host defence mechanisms.

In the local Universe, the census of all observed baryons falls short of the estimated number by a factor of two, and simulations have indicated that the missing baryons reside throughout the filaments of the cosmic web; X-ray observations of filamentary structures associated with the galaxy cluster Abell 2744 now find that 5 to 10 per cent of the filament mass is in the form of baryonic gas.

Growing evidence from metagenome-wide association studies link multiple common disorders to microbial dysbiosis but effects of drug treatment are often not accounted for; here, the authors re-analyse two previous metagenomic studies of type 2 diabetes mellitus patients together with a novel cohort to determine the effects of the widely prescribed antidiabetic drug metformin and highlight the need to distinguish the effects of a disease from the effects of treatment on the gut microbiota.

Common fragile sites (CFSs) are difficult-to-replicate regions of eukaryotic genomes that are sensitive to replication stress and that require resolution by the MUS81–EME1 endonuclease to re-initiate POLD3-dependent DNA synthesis in early mitosis; this study defines the specific pathway of events causing the CFS fragility phenotype.