Abstract
IgMs that inactivate oxidation-specific epitopes (IgMOSE), which are secondary products of lipid peroxidization, protect against inflammatory diseases, including diet-induced atherosclerosis. However, the human B cell subtype that produces IgMOSE remains unknown. In this study, we used single-cell mass cytometry and adoptive transfer of B cell subtypes to NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ (NSG) mice to identify B27+IgM+CD24hi cells as the major producers of IgMOSE in humans. Notably, these cells have characteristics of human circulatory marginal zone B (MZB) cells, which are known to be atheoroprotective IgM producers in mice. CD24 antibody treatment to reduce MZB cells and IgM in a hyperlipidemic humanized mouse model provides the evidence that MZB cells protect against vascular inflammation. Consistent with these findings, the frequency of B27+IgM+CD24hi cells (MZB) in patients inversely correlates with coronary artery disease severity.
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Data availability
The CyTOF raw data and RNA sequencing raw data are available at https://zenodo.org/record/8318928. Human genome assembly GRCh38, used to align RNA sequencing data, is available at https://genome.ucsc.edu/cgi-bin/hgGateway.
Other additional CAVA cohort surface marker data for Fig. 7c are available at the Gene Expression Omnibus under accession number GSE190570. De-identified human subjects clinical and imaging data will be released to others after the establishment of a data transfer agreement between the University of Virginia Health System and the requesting institution. The contact author of this manuscript, C.A.M., will serve as the contact for access requests and will respond to requests within 2 weeks. The shared human subjects clinical and imaging data will need to be treated confidentially and used only for research purposes.
Code availability
CyTOF data were normalized using the Nolan laboratory MATLAB normalizer version 0.3 with the code available at http://github.com/nolanlab/bead-normalization/releases. CyTOF data were also de-barcoded using the Zunder laboratory de-barcoder 24, with the code available at https://github.com/zunderlab/single-cell-debarcoder.
Change history
24 November 2023
A Correction to this paper has been published: https://doi.org/10.1038/s44161-023-00390-z
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Acknowledgements
We thank M. Solga and C. Chew from the University of Virginia Flow Cytometry Core for their excellent technical assistance. We thank L. Erickson (University of Virginia Carter Immunology Center) for his invaluable advice on B cell phenotypes and S. Bekiranov (University of Virginia Biochemistry and Molecular Genetics) for his insights on RNA sequencing analysis. This work was supported by National Institutes of Health grants R01HL136098 and R01-HL148109 (C.A.M.) and P01HL136275 (C.C.H., K.L., C.A.M., Y.M., A.M.T. and S.T.) and a LeDucq Foundation Transatlantic Network of Excellence grant: ‘B cells in cardiovascular disease’ (C.A.M.). T.P. is a recipient of an American Heart Association pre-doctoral fellowship.
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The authors confirm contributions to the paper as follows. Study conception and design: T.P. and C.A.M. Data collection: T.P., A.T.N., C.M., M.A.M., T.V.G., K.P., A.G. and S.P. Analysis and interpretation of results: H.Q.D., Y.G., R.G., C.D., J.V., R.S. and F.D. Samples and resources: A.M.T., B.K., S.B., S.T., Y.M., S.P., K.L., C.C.H. and C.A.M. Draft paper preparation: T.P. and C.A.M. All authors reviewed the results and approved the final version of the paper.
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Extended data
Extended Data Fig. 1 Unsupervised metalouvain clustering of CD19+ B cells obtained from 28 subjects with high and low plasma levels of IgM to MDA-LDL (n = 14 high IgM and n = 14 low IgM).
Clustering result indicates 11 distinct clusters with a subject from high IgM to MDA-LDL group representing a potential clonal expansion of cluster 1 (CD20+ CD25hi B cells).
Extended Data Fig. 2 Plasma level of IgMMDA-LDL strongly associates with Plasma level of IgMPC-BSA and IgMOxCE.
a, Pearson correlations between plasma IgMPC-BSA and plasma IgMMDA-LDL. b, Pearson correlations between plasma IgMOxCE and plasma IgMMDA-LDL. Error bands indicate values within 95% confidence interval. p-values were calculated with two-tailed Pearson correlations.
Extended Data Fig. 3 Unsupervised clustering of IgM producing B cells (clusters 1 and 8) obtained from 27 subjects with high and low plasma levels of IgM to MDA-LDL.
a, Representative metacluster UMAP showing 4 distinguished innate B cell subtypes by using Louvain clustering. b-c, Heatmap showing median expression of 24 surface markers from metaclustering (b) and potential phenotypes of 4 innate B cell subtypes (c). d, Representative UMAP showing CD24 expression across 4 innate B cell subtypes, e, Biaxial plots to compare frequency of each subtype as a percentage of total CD27+IgM+ B cells in subjects with high (n = 13) and low (n = 14) IgM MDA-LDL. Data were analyzed using two-sided Mann-Whitney Wilcoxon test. Values are mean ± s.d. Exact p-values were provided above each graph. Boxplots in Extended Data Fig. 3e are defined as the followings: minima = Quartile 1 – 1.5x(interquartile range), maxima = Quartile 3 + 1.5x(interquartile range), center = median, lower bound of box = Quartile 1, and upper bound of box = Quartile 3.
Extended Data Fig. 4 Pearson correlations between geometric mean (GM) of all CyTOF panel’s surface markers on B27+IgM+ and plasma IgMMDA-LDL.
Error bands indicate values within 95% confidence interval. p-values were calculated with two-tailed Pearson correlations.
Extended Data Fig. 5 Pearson correlations between geometric mean (GM) of CD24 on B27+IgM+ and plasma total IgM, IgM to OxCE, IgM to HMGB1, and IgM to ALDH4a1.
Error bands indicate values within 95% confidence interval. p-values were calculated with two-tailed Pearson correlations.
Extended Data Fig. 6 Sorting strategy for B27-, B27+IgM+CD24l°/-, and B27+IgM+CD24hi.
Human PBMCs were enriched for B cells and sorted for CD20CD27-, CD20 + CD27+IgM+CD24lo, and CD20 + CD27+IgM+CD24hi.
Extended Data Fig. 7 Pearson correlations between frequency of B27+IgM+CD24lo/- (a) and B27+IgM+CD24hi (b) and plasma IgMMDA-LDL in coronary artery disease (CAD) patients.
Error bands indicate values within 95% confidence interval. p-values were calculated with two-tailed Pearson correlations.
Extended Data Fig. 8 Confirmation of CD24 knockdown by RT-qPCR.
B27+IgM+CD24hi cells from 5 human donors were nucleo-transfected by Cas9/CD24 non-targeted or CD24 targeted trancrRNA-crRNA. Relative expression of CD24 mRNA was measured by RT-qPCR and corrected by GAPDH housekeeping gene. Data were analyzed by using two-sided Mann-Whitney Wilcoxon test. Values are mean ± s.d. Exact p-values were provided above each graph.
Supplementary information
44161_2023_356_MOESM2_ESM.xlsx
Supplementary Table 1. Differences in IgM and IgG to OSEs between high and low IgMMDA-LDL groups. Supplementary Table 2. DE genes compared between B27+IgM+CD24hi and B27+IgM+CD24lo/− cells. Supplementary Table 3. CyTOF antibodies. Supplementary Table 4. FACS sorting antibodies. Supplementary Table 5. Flow cytometry antibodies for tissue samples after humanized mice harvest.
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Pattarabanjird, T., Nguyen, A.T., McSkimming, C. et al. Human circulating CD24hi marginal zone B cells produce IgM targeting atherogenic antigens and confer protection from vascular disease. Nat Cardiovasc Res 2, 1003–1014 (2023). https://doi.org/10.1038/s44161-023-00356-1
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DOI: https://doi.org/10.1038/s44161-023-00356-1