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A protein-templated selection approach for the identification of full ligands from DNA-encoded libraries

A protein-templated selection approach has been developed for the discovery of full ligands from dual-pharmacophore DNA-encoded libraries by incorporating fragment linking into the selection process. The performance of this method was demonstrated with selections against protein–protein interaction and protein–DNA interaction targets, through which potent and selective inhibitors were identified.

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Fig. 1: Protein-templated fragment linking.

References

  1. Peterson, A. A. & Liu, D. R. Small-molecule discovery through DNA-encoded libraries. Nat. Rev. Drug Discov. 22, 699–722 (2023). A review article that presents a comprehensive overview of DELs.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Wichert, M. et al. Dual-display of small molecules enables the discovery of ligand pairs and facilitates affinity maturation. Nat. Chem. 7, 241–249 (2015). This paper reports the identification of synergistic binder pairs from dual-pharmacophore DELs.

    Article  CAS  PubMed  Google Scholar 

  3. Erlanson, D. A., Fesik, S. W., Hubbard, R. E., Jahnke, W. & Jhoti, H. Twenty years on: the impact of fragments on drug discovery. Nat. Rev. Drug Discov. 15, 605–619 (2016). A review article that presents the promise of fragment-based ligand discovery strategies and also the challenge of lead optimization by fragment linking.

    Article  CAS  PubMed  Google Scholar 

  4. Zhou, Y. et al. DNA-encoded dynamic chemical library and its applications in ligand discovery. J. Am. Chem. Soc. 140, 15859–15867 (2018). This paper reports the identifcation of cooperative binder pairs from dual-pharmacophore DNA-encoded dynamic libraries.

    Article  CAS  PubMed  Google Scholar 

  5. Bosc, D. et al. Kinetic target-guided synthesis: reaching the age of maturity. J. Med. Chem. 63, 3817–3833 (2020). A review article that presents the development of KTGS and its maturity as a strategy for protein-templated hit discovery and optimization.

    Article  CAS  PubMed  Google Scholar 

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This is a summary of: Zhou, Y. et al. Protein-templated ligand discovery via the selection of DNA-encoded dynamic libraries. Nat. Chem. https://doi.org/10.1038/s41557-024-01442-y (2024).

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A protein-templated selection approach for the identification of full ligands from DNA-encoded libraries. Nat. Chem. 16, 487–488 (2024). https://doi.org/10.1038/s41557-024-01441-z

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