Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Robustness of Hill’s overlapping-generation method for calculating Ne to extreme patterns of reproductive success

Abstract

For species with overlapping generations, the most widely used method to calculate effective population size (Ne) is Hill’s, the key parameter for which is lifetime variance in offspring number (\({V}_{k\bullet }\)). Hill’s model assumes a stable age structure and constant abundance, and sensitivity to those assumptions has been evaluated previously. Here I evaluate the robustness of Hill’s model to extreme patterns of reproductive success, whose effects have not been previously examined: (1) very strong reproductive skew; (2) strong temporal autocorrelations in individual reproductive success; and (3) strong covariance of individual reproduction and survival. Genetic drift (loss of heterozygosity and increase in allele frequency variance) was simulated in age-structured populations using methods that generated no autocorrelations or covariances (Model NoCor); or created strong positive (Model Positive) or strong negative (Model Negative) temporal autocorrelations in reproduction and covariances between reproduction and survival. Compared to Model NoCor, the other models led to greatly elevated or reduced \({V}_{k\bullet }\), and hence greatly reduced or elevated Ne, respectively. A new index is introduced (ρα,α+), which is the correlation between (1) the number of offspring produced by each individual at the age at maturity (α), and (2) the total number of offspring produced during the rest of their lifetimes. Mean ρα,α+ was ≈0 under Model NoCor, strongly positive under Model Positive, and strongly negative under Model Negative. Even under the most extreme reproductive scenarios in Models Positive and Negative, when \({V}_{k\bullet }\) was calculated from the realized population pedigree and used to calculate Ne in Hill’s model, the result accurately predicted the rate of genetic drift in simulated populations. These results held for scenarios where age-specific reproductive skew was random (variance ≈ mean) and highly overdispersed (variance up to 20 times the mean). Collectively, these results are good news for researchers as they demonstrate the robustness of Hill’s model even in extreme reproductive scenarios.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Fig. 1: Mean values of the lifetime variance in reproductive success (Vk) for simulated data.
Fig. 2: Observed (colored symbols) and expected (black lines) rates of genetic drift in a simulated population under Model Positive, Scenario ModerateSkew (in which ϕ = 5 for all ages in males).
Fig. 3: Observed (colored symbols) and expected (black lines) rates of loss of heterozygosity in simulated populations for three models that lead to positive correlations (Model Positive), negative correlations (Model Negative), and independence of individual reproductive success over time (Model NoCor).
Fig. 4: Observed (colored lines) and expected (solid black line) decline in observed heterozygosity for 10 different sets of 50 diallelic loci tracked on a single, 500-year pedigree.

Similar content being viewed by others

Data availability

All results presented here were generated by simulations. R code to conduct the simulations is available in Supplementary Information.

References

  • Bell G (1980) The costs of reproduction and their consequences. Am Nat 116(1):45–76

    Article  Google Scholar 

  • Byholm P, Nikula A, Kentta J, Taivalmäki J‐P (2007) Interactions between habitat heterogeneity and food affect reproductive output in a top predator. J Anim Ecol 76:392–401

    Article  PubMed  Google Scholar 

  • Caswell H (2001) Matrix population models: construction, analysis, and interpretation, 2nd edn. Sinauer Associates, Sunderland, MA

    Google Scholar 

  • Charlesworth B (1994) Evolution in age-structured populations, 2nd edn. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Crow JF, Kimura M (1970) An introduction in population genetics theory. Harper and Row, New York (NY)

    Google Scholar 

  • Cushing JM (1994) The dynamics of hierarchical age-structured populations. J Math Biol 32:705–729

    Article  Google Scholar 

  • Engen S, Lande R, Sæther B-E (2005) Effective size of a fluctuating age-structured population. Genetics 170:941–954

    Article  PubMed  PubMed Central  Google Scholar 

  • Engen S, Lande R, Sæther B-E, Dobson FS (2009) Reproductive value and the stochastic demography of agestructured populations. Am. Nat. 174:795–804

    Article  PubMed  Google Scholar 

  • Hedrick PW (2000) Genetics of populations, 2nd edn. Jones and Bartlett, Sudbury (MA)

    Google Scholar 

  • Hill WG (1972) Effective size of population with overlapping generations. Theor Popul Biol 3:278–289

    Article  CAS  PubMed  Google Scholar 

  • Hill WG (1979) A note on effective population size with overlapping generations. Genetics 92(1):317–322

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kruuk LE (2004) Estimating genetic parameters in natural populations using the ‘animal model’. Philos Trans R Soc B Biol Sci 359(1446):873–890

    Article  Google Scholar 

  • Lande R, Engen S, Saether BE (2003) Stochastic population dynamics in ecology and conservation. Oxford University Press.

  • Lee AM, Engen S, Sæther B-E (2011) The influence of persistent individual differences and age at maturity on effective population size. Proc Royal Soc B Biol Sci 278:3303–3312

    Article  Google Scholar 

  • Lee AM, Myhre AM, Markussen SS, Engen S, Solberg EJ, Haanes H, Røed K, Herfindal I, Heim M, Sæther BE (2020) Decomposing demographic contributions to the effective population size with moose as a case study. Mol Ecol 29(1):56–70

    Article  PubMed  Google Scholar 

  • McElligott AG, Hayden TJ (2000) Lifetime mating success, sexual selection and life history of fallow bucks (Dama dama). Behav Ecol Sociobiol 48:203–210

    Article  Google Scholar 

  • Mousseau TA, Fox CW (eds) (1998) Maternal effects as adaptations. Oxford University Press, New York.

  • Pelletier F, Hogg JT, Festa-Bianchet M (2006) Male mating effort in a polygynous ungulate. Behav Ecol Sociobiol 60:645–654

    Article  Google Scholar 

  • R Core Team (2021). R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/

  • Reznick D (1992) Measuring the costs of reproduction. Trends Ecol Evol 7(2):42–45

    Article  Google Scholar 

  • Roff D (1992) Evolution of life histories: theory and analysis. Chapman and Hall, New York

    Google Scholar 

  • Smith JN (1981) Does high fecundity reduce survival in song sparrows? Evolution 35:1142–1148.

  • Tuljapurkar S, Steiner UK, Orzack SH (2009) Dynamic heterogeneity in life histories. Ecol Lett 12(1):93–106

    Article  PubMed  Google Scholar 

  • Van Noordwijk AJ, De Jong G (1986) Acquisition and allocation of resources: their influence on variation in life history tactics. Am Nat 128(1):137–142

    Article  Google Scholar 

  • Vindenes Y, Engen S, Sæther BE (2008) Individual heterogeneity in vital parameters and demographic stochasticity. Am Nat 171(4):455–467

    Article  PubMed  Google Scholar 

  • Waples RS (2020) An estimator of the Opportunity for Selection that is independent of mean fitness. Evolution 74:1942–1953

    Article  PubMed  Google Scholar 

  • Waples RS (2022a) TheWeight: a simple and flexible algorithm for simulating non-ideal, age-structured populations. Methods Ecol Evol 13:2030–2041

    Article  Google Scholar 

  • Waples RS (2022b) What is Ne, anyway? J Hered 113:371–379

    Article  PubMed  Google Scholar 

  • Waples RS, Do C, Chopelet J (2011) Calculating Ne and Ne/N in age-structured populations: a hybrid Felsenstein-Hill approach. Ecology 92:1513–1522

    Article  PubMed  Google Scholar 

  • Waples RS, Antao T, Luikart G (2014) Effects of overlapping generations on linkage disequilibrium estimates of effective population size. Genetics 197:769–780

    Article  PubMed  PubMed Central  Google Scholar 

  • Waples RS, Feutry P (2022) Close-kin methods to estimate census size and effective population size. Fish Fish 23:273–293

    Article  Google Scholar 

  • Williams GC (1966) Natural selection, the costs of reproduction, and a refinement of Lack’s principle. Am Nat 100(916):687–690

    Article  Google Scholar 

  • Wilson AJ, Nussey DH (2010) What is individual quality? An evolutionary perspective. Trends Ecol Evol 25(4):207–214

    Article  PubMed  Google Scholar 

  • Wright S (1931) Evolution in Mendelian populations. Genetics 16(2):97–159

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wright S (1938) Size of population and breeding structure in relation to evolution. Science 87:430–431

    Google Scholar 

Download references

Acknowledgements

The author is grateful to Bill Hill for many insightful discussions over the years, relating to effective population size as well as other topics. I thank Steinar Engen and Bernt-Erik Saether for useful discussions. Per Erik Jorde provided comments that substantially improved the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Robin S. Waples.

Ethics declarations

Competing interests

The author declares no competing interests.

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Associate editor: Armando Caballero.

Supplementary information

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Waples, R.S. Robustness of Hill’s overlapping-generation method for calculating Ne to extreme patterns of reproductive success. Heredity 131, 170–177 (2023). https://doi.org/10.1038/s41437-023-00633-6

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41437-023-00633-6

Search

Quick links