Knockout of caspase recruitment domain-containing protein 9 (Card9), an IBD susceptibility gene, exacerbates colitis in mice by impairing microbial production of ligands critical for immune regulation that act via the aryl hydrocarbon receptor (AHR), according to a new study.

Whether dysbiosis is a cause or consequence of IBD is unclear. CARD9 plays a part in the innate immune response to fungi and promotes recovery from colitis by activating IL-22 production, but certain CARD9 polymorphisms favour IBD pathogenesis. In addition, Card9-knockout (Card9−/−) mice have increased vulnerability to colitis.

Card9−/− mice have a defective activation of the IL-22 pathway

Harry Sokol and colleagues investigated how Card9 and the gut microbiota might interact to affect IBD pathogenesis. In Card9−/− mice, the researchers detected impeded recovery from induced colitis in addition to altered gene expression in the colon. “Card9−/− mice have a defective activation of the IL-22 pathway,” explains Sokol. “We then compared the faecal microbiota of wild-type and Card9−/− mice and observed several differences both at the bacterial and fungal level”.

To isolate the effect of the altered microbiota on intestinal inflammation, the team colonized germ-free, wild-type mice with microbiota from Card9−/− mice and found that increased susceptibility to colitis and reduced IL-22 production was recapitulated in these animals. AHR activation can modulate IL-22 production, and microbiota-mediated metabolism of tryptophan is a crucial step in generating AHR ligands. Interestingly, the researchers observed impaired tryptophan metabolism in microbiota from Card9−/− mice. Furthermore, AHR agonist treatment or supplementation with tryptophan-metabolizing Lactobacillus strains rescued susceptibility to colitis in Card9−/− mice. Sokol and colleagues also found reduced AHR activation in patients with IBD compared with healthy individuals, a defect exacerbated in those with disease-associated CARD9 polymorphisms.

Cross-sections of proximal colon from wild-type (left) and Card9−/− (right) mice immunostained for proliferation marker Ki67. Image courtesy of H. Sokol.

“The next steps would be to try to correct this impaired microbiota function,” concludes Sokol.