A fundamental challenge to our understanding of biodiversity is to explain why some groups of species undergo adaptive radiations, diversifying extensively into many and varied species, whereas others do not1,2. Both extrinsic environmental factors (for example, resource availability, climate) and intrinsic lineage-specific traits (for example, behavioural or morphological traits, genetic architecture) influence diversification, but few studies have addressed how such factors interact. Radiations of cichlid fishes in the African Great Lakes provide some of the most dramatic cases of species diversification. However, most cichlid lineages in African lakes have not undergone adaptive radiations. Here we compile data on cichlid colonization and diversification in 46 African lakes, along with lake environmental features and information about the traits of colonizing cichlid lineages, to investigate why adaptive radiation does and does not occur. We find that extrinsic environmental factors related to ecological opportunity and intrinsic lineage-specific traits related to sexual selection both strongly influence whether cichlids radiate. Cichlids are more likely to radiate in deep lakes, in regions with more incident solar radiation and in lakes where there has been more time for diversification. Weak or negative associations between diversification and lake surface area indicate that cichlid speciation is not constrained by area, in contrast to diversification in many terrestrial taxa3. Among the suite of intrinsic traits that we investigate, sexual dichromatism, a surrogate for the intensity of sexual selection, is consistently positively associated with diversification. Thus, for cichlids, it is the coincidence between ecological opportunity and sexual selection that best predicts whether adaptive radiation will occur. These findings suggest that adaptive radiation is predictable, but only when species traits and environmental factors are jointly considered.
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Sequence data are deposited in the GenBank database under accession numbers listed in Supplementary Table 1.
We thank A. Ives, T. J. Davies and A. Mooers for analytical advice, P. McIntyre and C. Reidy Liermann for access to global energy data, S. Mwaiko, R. B. Stelkens, C. Katongo and U. Schliewen for unpublished DNA sequences, U. Schliewen, J. Jenson and O. Rittner for photographs, and A. McCune, D. Rabosky, R. Harrison, I. Lovette, E. Michel, G. Mittelbach, C. Melian, J. Brodersen, M. Maan, T. Ingram, B. Matthews, B. Dalziel, M. Pennell, J. Eastman, the Harmon laboratory group, the McCune laboratory group and the Seehausen laboratory group for discussions and comments on the manuscript. Bioinformatics facilities were supported by grants from the National Center for Research Resources (5P20RR016448-10) and the National Institute of General Medical Sciences (8 P20 GM103397-10) from the National Institutes of Health. This work was supported by the Swiss National Science Foundation project 31003A-118293 (to O.S.) and US National Science Foundation grant DEB 0919499 (to L.J.H.).
This file contains Supplementary Text and Data, Supplementary References, Supplementary Figures 1-6 and Supplementary Tables 1-6.
About this article
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes
Nature Communications (2018)