Letter | Published:

The nuclear RNase III Drosha initiates microRNA processing

Abstract

Hundreds of small RNAs of 22 nucleotides, collectively named microRNAs (miRNAs), have been discovered recently in animals and plants1,2,3,4,5,6,7,8,9,10. Although their functions are being unravelled1,2,11,12,13, their mechanism of biogenesis remains poorly understood. miRNAs are transcribed as long primary transcripts (pri-miRNAs) whose maturation occurs through sequential processing events: the nuclear processing of the pri-miRNAs into stem-loop precursors of 70 nucleotides (pre-miRNAs), and the cytoplasmic processing of pre-miRNAs into mature miRNAs14. Dicer, a member of the RNase III superfamily of bidentate nucleases, mediates the latter step15,16,17,18,19, whereas the processing enzyme for the former step is unknown. Here we identify another RNase III, human Drosha, as the core nuclease that executes the initiation step of miRNA processing in the nucleus. Immunopurified Drosha cleaved pri-miRNA to release pre-miRNA in vitro. Furthermore, RNA interference of Drosha resulted in the strong accumulation of pri-miRNA and the reduction of pre-miRNA and mature miRNA in vivo. Thus, the two RNase III proteins, Drosha and Dicer, may collaborate in the stepwise processing of miRNAs, and have key roles in miRNA-mediated gene regulation in processes such as development and differentiation.

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Acknowledgements

We are grateful to members of our laboratory and to K. Mitrophanous, J. M. Park and H. E. Kim for their critical reading of this manuscript and for discussion. This work was supported by the Korea Research Foundation and the BK21 Research Fellowship from the Ministry of Education and Human Resources Development of Korea.

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Correspondence to V. Narry Kim.

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The authors declare that they have no competing financial interests.

Supplementary information

Supplementary Figure 1 (PDF 294 kb)

Supplementary Figure 2 (PDF 811 kb)

Supplementary Figure 3 (PDF 498 kb)

Supplementary Figure 4 (PDF 472 kb)

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Supplementary Methods (DOC 32 kb)

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Figure 1: Cleavage sites and cis-acting requirements for the initiation step of miRNA processing.
Figure 2: In vitro processing of miRNA by Drosha.
Figure 3: In vitro processing activities of Drosha and Dicer.
Figure 4: In vivo function of Drosha.

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