Abstract
α-Ketoglutarate (α-KG), a pivotal metabolite in energy metabolism, has been implicated in nonalcoholic fatty liver disease (NAFLD) and several cancers. It is recently proposed that plasma α-KG is a surrogate biomarker of NAFLD. Here, we report the development of a novel “turn-on” chemosensor for α-KG that contains a coumarin moiety as a fluorophore. Using benzothiazole-coumarin (BTC) as inspiration, we designed a probe for calcium ion recognition that possesses a unique fluorophore compared with previously reported probes for α-KG measurement. This chemosensor is based on the specific Schiff base reaction and the calcium ion recognition property of the widely used calcium indicator BTC. The probe was synthesized, and a series of parallel experiments were conducted to optimize the chemical recognition process. Compared to the initial weak fluorescence, a remarkable 7.6-fold enhancement in fluorescence intensity (I/I0 at 495 nm) was observed for the conditions in which the probe (1 μmol/L), α-KG (50 μmol/L), and Ca2+ (100 μmol/L) were incubated at 30 °C in EtOH. The probe displayed good selectivity for α-KG even in an environment with an abundance of amino acids and other interfering species such as glutaric acid. We determined that the quantitative detection range of α-KG in EtOH was between 5 and 50 μmol/L. Finally, probe in serum loaded with α-KG (10 mmol/L) showed a 7.4-fold fluorescence enhancement. In summary, a novel probe for detecting the biomarker α-KG through a typical Schiff base reaction has been discovered. With further optimization, this probe may be a good alternative for detecting the physiological metabolite α-KG.
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Introduction
Small molecule biomarkers provide diagnostic insight into disease etiology or progression, and the detection of biomarkers plays an important role in the early diagnosis and treatment of diseases1,2,3,4,5,6. α-KG, also referred to as α-ketoglutaric acid, is a rate-determining intermediate in the tricarboxylic acid (TCA) cycle and plays a crucial role in cellular energy metabolism. Joven et al recently reported that plasma α-KG is a surrogate biomarker of NAFLD; thus, the direct measurement of α-KG may reduce the need for liver biopsies and may be useful in the assessment of disease progression and in the search for therapeutic options7. Additionally, mutated isocitrate dehydrogenase (IDH) transforms α-ketoglutarate (α-KG) into 2-hydroxyglutarate (2-HG), which is an oncometabolite in acute myeloid leukemia (AML) and glioma patients8,9,10,11,12,13,14.
The most frequently used methods for analyzing α-KG are gas chromatography15/high-performance liquid chromatography-mass spectrometry16 (GC/HPLC-MS). However, these methods are inconvenient because GC-MS and HPLC-MS both require tedious pretreatment. Accordingly, considerable research has focused on identifying fluorescent sensors that provide facile and sensitive methods to detect α-KG without requiring a bulky device17,18.
BTC is a low affinity calcium indicator (Kd=7 μmol/L) that exhibits an excitation wavelength shift from 462 nm to 401 nm upon binding Ca2+ with a fixed emission wavelength of 530 nm19. Its four carboxylic acid groups simulate the structure of ethylene glycol-bis(β-aminoethyl ether)-N,N,N',N'-tetraacetic acid (EGTA) and thus are believed to be involved in calcium chelation. Using BTC as inspiration, we designed a probe for calcium ion recognition that possesses a unique fluorophore for α-KG measurement. An intermediate with four carboxyl groups should be generated in situ from the probe and α-KG through a typical Schiff base reaction. This intermediate is similar to BTC and therefore may exhibit fluorescence changes that can be used to measure the concentration of α-KG (Figure 1).
The probe was synthesized in five steps, as outlined in Scheme 1. A series of parallel experiments was conducted to optimize the chemical recognition process. The probe itself exhibited weak fluorescence with a maximum excitation wavelength of 439 nm and a maximum emission wavelength of 495 nm. When α-KG and Ca2+ were added to the system under optimum conditions, the emission fluorescence intensity was significantly enhanced, although no significant shift in the excitation or emission wavelength was observed.
Materials and methods
Chemistry
Starting materials, reagents, and solvents were purchased from commercial suppliers and used without further purification unless otherwise stated. All non-aqueous reactions were performed under an inert atmosphere (nitrogen or argon) with rigid exclusion of moisture from reagents, and all reaction vessels were oven dried. 6-Hydroxycoumarin and ethyl 2-(2-benzothiazolyl)acetate were purchased from Tokyo Chemical Industry Co, Ltd (Shanghai). 2-(2-Bromoethoxy)-4-methyl-1-nitrobenzene was prepared according to the literature methods20.
1H NMR spectra were recorded on a spectrometer operating at 300 MHz with tetramethylsilane (TMS) as an internal reference. 13C NMR spectra were recorded on a spectrometer operating at 125 MHz with tetramethylsilane (TMS) as an internal reference. HRMS were measured on an Agilent Accurate-Mass Time-of-Flight (TOF) LC/MS 6224 spectrometer. Reaction progress was monitored by silica gel thin layer chromatography (TLC) plates that were visualized under UV. Products were purified by flash column chromatography (FCC) on 200-300 mesh silica gel. The absorption spectra and emission spectra in solution were measured with a multifunctional SpectraMax M5 microplate reader.
Reagents and conditions
6-Hydroxy-7-nitro-2H-chromen-2-one (S1)
6-Hydroxycoumarin (6 g, 37.01 mmol) was suspended in dry MeCN (180 mL), a solution of ceric ammonium nitrate (2.03 g, 37.01 mmol) in dry MeCN (180 mL) was added via syringe, and the resulting mixture was stirred for 30 min at room temperature. Upon completion (monitored by TLC), all solid materials disappeared, and the reaction mixture became clear. The mixture was poured into ice water and extracted with EtOAc. The organic layer was washed sequentially with saturated sodium bisulfate and brine, dried over anhydrous Na2SO4, and concentrated in vacuo. The residue was further purified by silica gel column chromatography (CH2Cl2). Compound S1 was obtained as a yellow solid (500 mg, 6.5%). 1H NMR (300 MHz, CDCl3): δ 10.29 (s, 1H), 8.08 (s, 1H), 7.67 (d, J=9.6 Hz, 1H), 7.28 (s, 1H), 6.62 (d, J=9.6 Hz, 1H). 13C NMR (125 MHz, CD3OD+CDCl3): δ 159.58, 149.64, 145.03, 141.56, 135.27, 125.32, 119.95, 117.38, 112.00. HRMS (ESI) m/z calc'd for C9H5NO5 [M-H]− 206.0095, found 206.0262.
6-(2-(5-Methyl-2-nitrophenoxy)ethoxy)-7-nitro-2H-chromen-2-one (S2)
To a stirred solution of S1 (500 mg, 2.41 mmol) in dry DMF (50 mL) was added 2-(2-bromoethoxy)-4-methyl-1-nitrobenzene (630 mg, 2.41 mmol), anhydrous potassium carbonate (500 mg, 3.62 mmol), and anhydrous KI (40 mg, 0.24 mmol), and the reaction mixture was stirred for 3 h at 70 °C. At this time, 2-(2-bromoethoxy)-4-methyl-1-nitrobenzene (630 mg, 2.41 mmol), anhydrous potassium carbonate (500 mg, 3.62 mmol), and anhydrous KI (40 mg, 0.24 mmol) were added, and the reaction mixture was stirred for another 2 h at 70 °C. After completion (monitored by TLC), the solution was acidified with 1 mol/L HCl, filtered, washed with water, and dried. The precipitated solid was further purified by silica gel column chromatography (petroleum ether/EtOAc=2/1). Compound S2 was obtained as a yellow solid (831 mg, 89.1%). 1H NMR (300 MHz, CDCl3): δ 2.44 (s, 3H), 4.50 (t, J=3.9 Hz, 2H), 4.65 (t, J=3.9 Hz, 2H), 6.59 (d, J=9.6 Hz, 1H), 6.89 (d, J=8.4 Hz, 1H), 6.95 (s, 1H), 7.63 (s, 1H), 7.73 (s, 1H), 7.80 (d, J=8.1 Hz, 1H), 7.88 (d, J=9.6 Hz, 1H). 13C NMR (125 MHz, CDCl3): δ 159.52, 152.01, 148.53, 147.64, 146.56, 142.09, 142.00, 137.68, 126.18, 123.14, 122.24, 120.13, 116.02, 115.56, 113.71, 70.53, 69.15, 22.10. HRMS (ESI) m/z calc'd for C18H14N2O8 [M+H]+387.0823, found 387.0822.
2-Hydroxy-5-(2-(5-methyl-2-nitrophenoxy)ethoxy)-4-nitrobenzaldehyde (S3)
Compound S2 (831 mg, 2.15 mmol) was dissolved in CH2Cl2 (250 mL) and cooled to 0 °C. The reaction mixture was exposed to ozone for 1 h at 0 °C. After complete consumption of S2 was observed (based on TLC), the reaction mixture was stirred overnight with excess dimethylsulfide at room temperature. The solution was then concentrated in vacuo and purified by silica gel column chromatography (petroleum ether/EtOAc=4/1 to 2/1). Compound S3 was obtained as a yellow solid (700 mg, 89.9%). 1H NMR (300 MHz, CDCl3): δ 10.83 (s, 1H), 10.07 (s, 1H), 7.80 (d, J=8.4 Hz, 1H), 7.73 (s, 1H), 7.30 (s, 1H), 6.93 (s, 1H), 6.88 (d, J=7.5 Hz, 1H), 4.58 (t, J=3.9 Hz, 2H), 4.46 (t, J=3.9 Hz, 2H), 2.44 (s, 3H). 13C NMR (125 MHz, CDCl3): δ 196.30, 156.05, 152.07, 146.48, 146.43, 144.51, 137.74, 126.13, 122.75, 122.65, 122.15, 115.53, 113.99, 71.18, 69.04, 22.09. HRMS (ESI) m/z calc'd for C16H14N2O8 [M+H]+ 363.0823, found 363.0823.
3-(Benzo[d]thiazol-2-yl)-6-(2-(5-methyl-2-nitrophenoxy)ethoxy)-7-nitro-2H-chromen-2-one (S4)
S3 (700 mg, 1.93 mmol) and ethyl 2-(2-benzothiazolyl)acetate (1.07 g, 4.83 mmol) were suspended in dry EtOH (180 mL), piperidine (860 μL, 8.70 mmol) was added via syringe, and the resulting mixture was refluxed overnight. After completion (monitored by TLC), the reaction mixture was poured into water and extracted with CH2Cl2. The organic layer was washed sequentially with saturated sodium bicarbonate and brine, dried over anhydrous Na2SO4, and concentrated in vacuo. The residue was further purified by silica gel column chromatography (petroleum ether/CH2Cl2=1/10). Compound S4 was obtained as a yellow solid (560 mg, 56.00%). 1H NMR (300 MHz, CDCl3): δ 9.13 (s, 1H), 8.14 (d, J=8.4 Hz, 1H), 8.01 (d, J=8.1 Hz, 1H), 7.86 (s, 1H), 7.79 (d, J=8.4 Hz, 1H), 7.66 (s, 1H), 7.57 (t, J=7.2 Hz, 1H), 7.47 (t, J=7.2 Hz, 1H), 6.99 (s, 1H), 6.90 (d, J=7.8 Hz, 1H), 4.65 (t, J=3.9 Hz, 2H), 4.54 (t, J=3.9 Hz, 2H), 2.45 (s, 3H). 13C NMR (125 MHz, d6-DMSO): δ 159.14, 158.97, 151.95, 151.19, 146.95, 146.45, 145.77, 141.71, 139.97, 137.29, 136.24, 126.93, 125.87, 125.10, 122.84, 122.61, 122.42, 122.13, 121.57, 115.93, 115.46, 112.71, 68.69, 67.76, 21.33. HRMS (ESI) m/z calc'd for C25H17N3O8S [M+H]+ 520.0809, found 520.0808.
7-Amino-6-(2-(2-amino-5-methylphenoxy)ethoxy)-3-(benzo[d]thiazol-2-yl)-2H-chromen-2-one (Probe)
To a stirred mixture of S4 (20 mg, 0.04 mmol) and tetrabutyl ammonium bromide (38 mg, 0.12 mmol) was added anhydrous stannous chloride (44 mg, 0.23 mmol). The reaction mixture was stirred at room temperature until it became an ionic liquid. The liquid was then stirred for 4 h at 90 °C. After completion (monitored by TLC), the reaction was diluted with water and extracted with CH2Cl2. The organic layer was washed with brine, dried over anhydrous Na2SO4, and concentrated in vacuo. The residue was further purified by silica gel column chromatography (petroleum ether/acetone=3/1). Probe was obtained as a yellow solid (10 mg, 55.56%). 1H NMR (300 MHz, d6-DMSO): δ 9.03 (s, 1H), 8.12 (d, J=7.5 Hz, 1H), 7.99 (d, J=8.1 Hz, 1H), 7.53 (t, J=9.6 Hz, 1H), 7.50 (s, 1H), 7.41 (t, J=7.8 Hz, 1H), 6.53 - 6.72 (m, 4H), 4.51 (s, 2H, NH), 4.40 (s, 2H), 4.36 (s, 2H), 2.27 (s, 3H). 13C NMR (125 MHz, d6-DMSO): δ 161.31, 160.29, 152.23, 152.15, 146.68, 145.32, 142.99, 142.64, 137.81, 135.35, 126.30, 125.09, 124.48, 121.98, 121.77, 121.68, 114.34, 113.59, 110.55, 110.37, 107.84, 97.89, 67.62, 66.74, 20.53. HRMS (ESI) m/z calc'd for C25H21N3O4S [M+H]+ 460.1326, found 460.1326.
Biology
The detection of α-KG in fetal bovine serum was conducted according to previously reported methods18. In brief, 1 μmol/L probe and 10 mmol/L Ca2+ in EtOH (0.02% DMSO as cosolvent) were incubated with serum (loaded with α-KG, because the original content is very low) at 30 °C for 0.2 min, and the system was then centrifuged to separate the sediment. The fluorescence of the supernatant fraction was measured on a SpectraMax M5 multifunctional microplate reader.
Results
Probe design
BTC is a useful intracellular fluorescent probe for Ca2+. Using the coumarin moiety as a fluorophore, the dye exhibits an excitation wavelength shift from 462 nm to 401 nm upon binding Ca2+, whereas the emission wavelength of 530 nm remains unchanged. The quantum yield of this probe nearly doubles upon binding Ca2+. The affinity of this probe for Ca2+ is low (Kd=7 μmol/L); therefore, it has an advantage over high affinity indicators for use in excitatory cells or extracellular spaces where calcium concentrations are very high21.
Based on the structure of BTC and its calcium ion recognition, we designed a probe that employs a Schiff base reaction and exhibits remarkable spectral changes (Figure 1). The probe is a BTC derivative in which the substituents on the nitrogen atom are replaced by hydrogen atoms. The two amino groups of this probe act as specific recognition groups that react with the carbonyl group of α-KG to form the corresponding Schiff base product containing four carboxyl groups, which is similar to BTC. Upon chelating Ca2+, the probe may exhibit fluorescence changes that can be used to determine the concentration of α-KG.
The yield and rate of Schiff base-generated reactions are known to be affected by various factors. To elicit the best possible fluorescent response during the chemical recognition process, optimum conditions for sensing α-KG were investigated. To optimize the recognition process, a variety of preliminary studies was performed, including optimization for the solvent, probe concentration, reaction temperature, and response time. The following experiments were conducted to identify conditions that would improve the fluorescent response to α-KG.
Probe synthesis
We explored synthetic pathways to the target molecule22,23,24 and determined a simple and efficient route. Consisting of five steps, this route utilized 6-hydroxycoumarin as the starting material and gave the probe in an overall yield of 4.3% (Scheme 1). The structure of the probe was confirmed by NMR and MS analyses.
Solvent system optimization
To screen for an appropriate solvent, a series of parallel experiments was performed for the chemical recognition process. The probe was dissolved in DMSO to prepare a 5×10−3 mol/L stock solution and then diluted to 1×10−6 mol/L in various solvents, including tetrahydrofuran (THF), acetonitrile (MeCN), ethanol (EtOH), methanol (MeOH), dimethyl sulfoxide (DMSO), and H2O. Except for the DMSO solution, these solutions contained 0.02% DMSO as a cosolvent.
Based on the spectra, we found that the probe had very weak initial fluorescence in water but displayed stronger fluorescence in organic solutions (Figure 2). This result can be attributed to the hydrophobic structure of the probe and its higher solubility in organic solvents. Thus, in the following experiments, we chose EtOH as the best solvent for optimizing the fluorescent response for α-KG detection.
Probe concentration optimization
The probe concentration was predicted to have a significant influence on the fluorescence response. A series of experiments was conducted with the probe concentration ranging from 0.1 to 50 μmol/L. A low probe concentration did not produce sufficiently strong fluorescence for testing, and fluorescence quenching occurred at a probe concentration of 50 μmol/L (Figure 3). The suitable probe concentration, as a key characteristic of the kinetics affecting the reaction rate for the formation of Schiff base, was determined to be 1 μmol/L.
Temperature optimization
The relationship of the temperature to the kinetics of the reaction is also of major importance for the specific Schiff base reaction and thus was carefully investigated in the chemical recognition process. At temperatures of 30, 35, 40, and 45 °C, the fluorescence enhancement was 7.6, 6.3, 5.7, and 5.1, respectively (Figure 4A).
Although human physiological body temperature is approximately 37.5 °C, the experimental measurements showed that the greatest fluorescence enhancement was obtained at 30 °C. Furthermore, the fluorescence intensity decreased gradually with temperature. Therefore, 30 °C was chosen as the optimum temperature in the following experiments.
Response time optimization
For a reaction-based sensor, the response time plays an important role in the chemical recognition process. To confirm the appropriate response time of the reaction, we studied the reaction decay kinetics of the probe with α-KG and Ca2+ using a time-based fluorescence assay with response times of 0.2, 5, 10, 15, 20, 25, 30, 35, and 40 min.
Within 0.2 min, the fluorescence intensity of the probe increased significantly at 495 nm upon the addition of α-KG and Ca2+ in EtOH at 30 °C (Figure 4B). The experimental data revealed that the Schiff base reaction and chelation between calcium and the Schiff base product were completed instantaneously. Thus, 0.2 min was chosen as a suitable response time for the chemical recognition process.
Response to α-KG or Ca2+ alone
Because three components (probe, α-KG, and Ca2+) were involved in our design strategy for α-KG analysis, we first investigated the fluorescent response of each factor. In the following tests in which elevated concentrations of α-KG or Ca2+ were added to an ethanol solution of the probe, we attempted to determine whether α-KG or Ca2+ would individually affect the emission fluorescence intensity.
There was only a subtle response of the probe to the addition of different concentrations of Ca2+, whereas the emission fluorescence intensity increased 1.5/2.1-fold upon the addition of a high concentration of α-KG (50 μmol/L/100 μmol/L) (Figure 5). Consistent with our assumption, the Schiff base product was formed between the probe and α-KG, and then responded to Ca2+ to produce a change in the fluorescence. Furthermore, Ca2+ did not elicit a response in the absence of α-KG.
Response to α-KG and Ca2+
After completing the single factor parallel tests, we conducted a series of experiments on the system consisting of all three components. To verify our hypothesis regarding the chemical recognition process for α-KG detection, many possibilities were investigated by adding different concentrations of α-KG and Ca2+ simultaneously.
The most remarkable 4.9-fold fluorescence enhancement (the ratio of fluorescence with and without 100 μmol/L Ca2+) at 495 nm occurred only when the concentrations of both α-KG (50 μmol/L) and Ca2+(100 μmol/L) were very high (Figure 6). Because the affinity of BTC for Ca2+ is low (Kd=7 μmol/L), the high fluorescence increase with a high concentration of calcium is understandable. Furthermore, the significant response cannot be attributed to acidity because other combinations of components with 50 μmol/L α-KG exhibited a significantly smaller (1.5-fold) fluorescence enhancement. The interaction between the Schiff base product and calcium and the Schiff base chemical reaction itself were likely responsible for this interesting experimental result.
Selectivity of α-KG, various amino acids, pyruvic acid, and glutaric acid
A living cell is a delicate system that contains many complex components, such as amino acids and pyruvic acid. Therefore, we investigated the probe's selectivity in the presence of various amino acids. The probe's carbonyl selectivity was examined under the optimum conditions; the probe (1 μmol/L) was tested with α-KG or various amino acids (50 μmol/L) at 30 °C in EtOH. Clearly, only α-KG caused a remarkable response with an approximately 7.6-fold fluorescence intensity increase at 495 nm (Figure 7). This result indicates that the probe exhibited good specificity toward α-KG even in an environment with an abundance of amino acids.
We also investigated two other potential competitors, pyruvic acid and glutaric acid, which have similar carbonyl and carboxyl groups as α-KG. Only α-KG exhibited a significant 7.6-fold fluorescence enhancement under the optimum conditions, whereas the other two compounds exhibited minor responses (Figure 8). This result was likely due to the lower reactivities of pyruvic acid and glutaric acid compared to α-KG, although these competitors could react with the probe. However, the response of the probe to pyruvic acid (approximately 5-fold) is greater than half that to α-KG (7.6-fold), indicating that it could interfere in α-KG detection. Further optimization is ongoing.
Detection range in EtOH
With the knowledge that the probe is capable of selectively detecting α-KG in a complicated environment under optimum conditions, we conducted further studies to determine its detection range. By performing nonlinear curve fitting of the maximum fluorescence intensity of the probe with different α-KG concentrations, we obtained an S-curve in which the fluorescence intensity differed with changing α-KG concentrations. The quantitative detection range of α-KG was 5 μmol/L to 50 μmol/L with a probe concentration of 1 μmol/L and a calcium concentration of 100 μmol/L (Figure 9).
Potential application
Finally, considering its good performance under optimum conditions, the probe was used to detect α-KG in serum according to previously reported methods18. Due to the poor solubility of the probe in water, 1 μmol/L probe and 10 mmol/L Ca2+ in ethanol were added into serum (loaded with α-KG, because the original level is very low). The system was then centrifuged to separate the sediment, and the supernatant fraction caused the most significant 7.4-fold fluorescence enhancement (Figure 10). Although the response was obtained with a high concentration of α-KG, a fluorescence response of our probe to α-KG occurred in the serum environment. Compared with the best solvent EtOH, the sensitivity of probe in serum decreased significantly, which is understandable considering the following: 1) serum containing various constituents is far more complicated than single solvent, and something in the serum may interfere with the probe's response to α-KG; 2) unlike organic solvent, the solubility of the probe was poor in aqueous systems, which limited our ability to improve sensitivity by increasing probe concentration. Further studies to improve the sensitivity of probe for α-KG in serum or other biological samples are currently in progress.
Discussion
Because elaborate pretreatment is essential for GC/LC-MS, these measurement methods that are most commonly used for α-KG need to be improved. Guo's group17,18 recently reported two fluorescent probes for α-KG. In the first probe, a hydrazino group was introduced into a naphthalimide moiety as the reaction trigger for the specific fluorescence turn-on response, and a diazanyl group was employed as the recognition group linked to a benzothiadiazole fluorophore moiety in their next sensor, DT.
In this work, a novel probe based on the typical Schiff base reaction was designed and synthesized for detecting the biomarker α-KG. In the specific chemical recognition process, ketimines were generated and then formed a calcium chelate via the four carboxyl groups. Notably, compared with the initial weak fluorescence intensity, a remarkable 7.6-fold enhancement (I/I0 at 495 nm) was observed for conditions in which the probe (1 μmol/L), α-KG (50 μmol/L), and Ca2+ (100 μmol/L) were incubated for 0.2 min at 30 °C in EtOH. The chemical reaction in a system composed of the probe, α-KG, and calcium is clearly responsible for the significant fluorescence increase because the two-component system of the probe and α-KG or Ca2+ was not responsive. Further studies showed that the probe displayed good selectivity towards α-KG even in an environment with an abundance of amino acids and other competitors. We also determined that the quantitative detection range of α-KG in EtOH was 5 μmol/L to 50 μmol/L. Finally, probe in serum loaded with 10 mmol/L α-KG was found to cause a most significant 7.4-fold fluorescence enhancement.
Considering that commercial kits detecting α-KG in patients are not available, our discovery of a fluorescent probe, although preliminary, is instructive for the development of α-KG sensors. With further optimization, our probe containing a fluorophore of BTC may be an alternative tool for detecting the physiological metabolite α-KG.
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Gan, Ll., Chen, Lh. & Nan, Fj. Discovery of a novel calcium-sensitive fluorescent probe for α-ketoglutarate. Acta Pharmacol Sin 38, 1683–1690 (2017). https://doi.org/10.1038/aps.2017.75
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DOI: https://doi.org/10.1038/aps.2017.75