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Both Beerling and Retallack question our conclusion that atmospheric CO2 levels remained relatively stable across the Triassic–Jurassic boundary, partly on the basis of insufficient stratigraphic resolution. However, the stratigraphy of the formations we studied is well known1. The Lower Jurassic McCoy Brook Formation of the Fundy basin overlies the North Mountain Basalt, which was extruded during the initial stages of volcanism in the Central Atlantic Magmatic Province (CAMP), and so this formation post-dates the main eruptive episode. Palaeosols in this formation occur within 10 m of the formation base; the age of these palaeosols is therefore constrained by the basalt to within several hundred thousand years of the Triassic–Jurassic boundary, which is located several metres below the basalt. Because the duration of the eruptions of CAMP volcanics, which occurred in several pulses, has been established as roughly 600,000 years2, palaeosol formation in the McCoy Brook Formation is contemporaneous with the latter stages of the CAMP eruptions. These palaeosols may therefore be expected to record the cumulative effects of the eruptions.

Our palaeo-CO2 values are calculated from the diffusion-reaction model, which requires measurements or assumptions for a variety of factors that control soil CO2, not least the isotopic composition of plant-derived organic matter (δ13COM)3,4. Ideally, organic matter in the palaeosol that contains the carbonate is used to obtain this value because the δ13C of C3 plants is known to vary significantly in contemporaneous soils from differing climatic regimes3. Unfortunately, the McCoy Brook Formation, from which the Lower Jurassic carbonate samples were obtained, lacks well-preserved plant material.

The only record of δ13COM across the Triassic–Jurassic boundary available at the time of our calculations provides data for locations in eastern Greenland and southern Sweden5, but the negative δ13C excursion at the boundary shown in the eastern Greenland data, represented primarily by a single data point, is not apparent in the southern Sweden data set. Moreover, the sediments that contain plant fossils at the eastern Greenland location accumulated under the influence of a significantly more humid climate than existed in the Fundy basin1, a fact that renders isotope data from this location inapplicable to the interpretation of data derived from the semi-arid palaeosols.

For these reasons, we chose not to use these data, and instead assumed a single value for both the Late Triassic and Early Jurassic that is consistent with published measures of organic matter in Upper Triassic formations3 that were deposited under climatic conditions similar to those of the studied formations. This potential source of inaccuracy may ultimately be resolved only by location and analysis of organic material in the McCoy Brook Formation.

The fossil stomatal evidence of Beerling and Retallack seems to indicate a several-fold increase in atmospheric pCO2 across the Triassic–Jurassic boundary5,6. The use of stomatal indices for calculation of palaeo-CO2 levels is based on experiments in which modern plants were grown at pCO2 values of up to twice present levels7, but calls for an extrapolation of the experimental pCO2 values to the much higher palaeo-CO2 values interpreted for the past. The use of these indices also requires the assumption that the floral response to these conditions was quantitatively the same 200 million years ago as it would be today. This approach may therefore also generate inaccuracies.

As mentioned by Beerling, data from the marine realm that indicate a significant negative carbon-isotope excursion at the Triassic–Jurassic boundary shed new light on the extinction problem8, demonstrating an intense but short-lived perturbation of the global carbon cycle of a magnitude that is not consistent with volcanic outgassing. This is supported by a simple mass-balance calculation, on the basis of the largest estimate of the volume and volatile content of intrusions of the CAMP9, showing that outgassing during the eruptions produced 5.6 × 1016 mol CO2 in total, an amount that is equivalent to that in the modern atmosphere.

This volume is insufficient to drive the isotopic excursion of marine carbonates8 and is unlikely to have affected the atmosphere of the early Mesozoic era, given the high pCO2 of the Late Triassic1. Rapid release of seafloor methane hydrate, as suggested by Retallack, has been implicated in other extinction events, and this release may have been triggered by the effects of CAMP volcanism. Such a release, which is consistent with the magnitude of the isotopic excursion, need not have resulted in greatly increased atmospheric pCO2 as suggested by Retallack, as evidence exists that much of the methane released by this process would be oxidized within the water column, resulting in a brief interval of ocean anoxia10 and widespread extinction.

Our conclusion stands: the isotope compositions of pedogenic carbonates fail to indicate a substantial increase in atmospheric pCO2 as a result of the CAMP eruptions. We are all in agreement that although existing methods of estimating palaeo-CO2 are inexact, their validity is not mutually exclusive, and also that the cause of the end-Triassic extinction event is uncertain, with environmental degradation resulting from the CAMP volcanism probably being involved. Acquisition of new data by both methods from other locations should resolve this uncertainty; better time resolution will constrain the relationships between the abrupt marine extinctions11, the possibly asynchronous floral turnover12 and the duration of the CAMP eruptions, which may have lasted for several million years13.