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Open Access
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Hyphosphere microorganisms facilitate hyphal spreading and root colonization of plant symbiotic fungus in ammonium-enriched soil
- Kai Sun
- , Hui-Jun Jiang
- & Chuan-Chao Dai
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Article
| Open AccessPrey preference in a kleptoplastic dinoflagellate is linked to photosynthetic performance
- Norico Yamada
- , Bernard Lepetit
- & Rosa Trobajo
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Article
| Open AccessWidespread Bradyrhizobium distribution of diverse Type III effectors that trigger legume nodulation in the absence of Nod factor
- Alicia Camuel
- , Albin Teulet
- & Eric Giraud
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Article
| Open AccessPhyllosphere symbiont promotes plant growth through ACC deaminase production
- Johannes B. Herpell
- , Ajtena Alickovic
- & Wolfram Weckwerth
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Article
| Open AccessDysfunction of histone demethylase IBM1 in Arabidopsis causes autoimmunity and reshapes the root microbiome
- Suhui Lv
- , Yu Yang
- & Huiming Zhang
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Article
| Open AccessFlavonoid-attracted Aeromonas sp. from the Arabidopsis root microbiome enhances plant dehydration resistance
- Danxia He
- , Sunil K. Singh
- & Huiming Zhang
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Article
| Open AccessCross-feeding niches among commensal leaf bacteria are shaped by the interaction of strain-level diversity and resource availability
- Mariana Murillo-Roos
- , Hafiz Syed M. Abdullah
- & Matthew T. Agler
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Article
| Open AccessIdentification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
- Mingsheng Qi
- , Jeffrey C. Berry
- & Rebecca S. Bart
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Article
| Open AccessSynthetic bacterial community derived from a desert rhizosphere confers salt stress resilience to tomato in the presence of a soil microbiome
- Lucas Schmitz
- , Zhichun Yan
- & Xu Cheng
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Ectomycorrhizal fungi mediate belowground carbon transfer between pines and oaks
- Rotem Cahanovitc
- , Stav Livne-Luzon
- & Tamir Klein
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Article
| Open AccessCommensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms
- Or Shalev
- , Haim Ashkenazy
- & Detlef Weigel
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Article
| Open AccessNovel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism
- Alyssa A. Carrell
- , Dušan Veličković
- & David J. Weston
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Article
| Open AccessThe fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley
- Lisa K. Mahdi
- , Shingo Miyauchi
- & Alga Zuccaro
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Perspective |
Integrating plant-to-plant communication and rhizosphere microbial dynamics: ecological and evolutionary implications and a call for experimental rigor
The perception of airborne chemical signals by plants can trigger reconfigurations of their metabolism that alter their biotic interactions. While plant-to-plant chemical communication has primarily been studied in the context of eliciting defenses to herbivores and pathogens, recent work suggests that it can also affect plants’ interactions with their rhizosphere microbiomes. In this perspective, we discuss the potential for integrating the fields of plant-to-plant communication and microbial ecology to understand the chemical ecology of plant−microbiome interactions. As an introduction for microbial ecologists, we highlight mechanistic knowledge gaps in plant volatile organic compound (VOC) perception and provide recommendations for avoiding common experimental errors that have plagued the plant communication field. Lastly, we discuss potential implications of plant VOCs structuring rhizosphere microbiomes, particularly effects on plant community and evolutionary dynamics. As we continue to discover links between plant metabolism and their microbiomes—from molecular to community scales—we hope that this perspective will provide both motivation and words of caution for researchers working at the intersection of these two fields.
- Mia M. Howard
- , Ethan Bass
- & André Kessler
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Cytokinin drives assembly of the phyllosphere microbiome and promotes disease resistance through structural and chemical cues
- Rupali Gupta
- , Dorin Elkabetz
- & Maya Bar
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Article
| Open AccessConversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption
- Colin T. Bates
- , Arthur Escalas
- & Jizhong Zhou
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Article
| Open AccessGenome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome
- Siwen Deng
- , Daniel F. Caddell
- & Devin Coleman-Derr
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Salt-induced recruitment of specific root-associated bacterial consortium capable of enhancing plant adaptability to salt stress
- Hong Li
- , Shikai La
- & Yongqiang Tian
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Article
| Open AccessMaize germplasm chronosequence shows crop breeding history impacts recruitment of the rhizosphere microbiome
- Alonso Favela
- , Martin O. Bohn
- & Angela D. Kent
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Article
| Open AccessIncreasing flavonoid concentrations in root exudates enhance associations between arbuscular mycorrhizal fungi and an invasive plant
- Baoliang Tian
- , Yingchun Pei
- & Evan Siemann
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Article
| Open AccessMapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments
- Anik Dutta
- , Fanny E. Hartmann
- & Daniel Croll
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Article
| Open AccessFunctional mutants of Azospirillum brasilense elicit beneficial physiological and metabolic responses in Zea mays contributing to increased host iron assimilation
- A. B. Housh
- , G. Powell
- & R. A. Ferrieri
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Article
| Open AccessSpecificity of assemblage, not fungal partner species, explains mycorrhizal partnerships of mycoheterotrophic Burmannia plants
- Zhongtao Zhao
- , Xiaojuan Li
- & Dianxiang Zhang
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Article
| Open AccessDisruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease
- Sang-Moo Lee
- , Hyun Gi Kong
- & Choong-Min Ryu
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Article
| Open AccessTemporal tracking of quantum-dot apatite across in vitro mycorrhizal networks shows how host demand can influence fungal nutrient transfer strategies
- Anouk van’t Padje
- , Loreto Oyarte Galvez
- & E. Toby Kiers
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Brief Communication |
Cutting out the middle clam: lucinid endosymbiotic bacteria are also associated with seagrass roots worldwide
- Belinda C. Martin
- , Jen A. Middleton
- & Hannes Schmidt
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Article
| Open AccessBidirectional C and N transfer and a potential role for sulfur in an epiphytic diazotrophic mutualism
- Rhona K. Stuart
- , Eric R. A. Pederson
- & Christopher L. Dupont
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Article |
Quantitative comparison between the rhizosphere effect of Arabidopsis thaliana and co-occurring plant species with a longer life history
- Martinus Schneijderberg
- , Xu Cheng
- & Ton Bisseling
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Article |
Alien ectomycorrhizal plants differ in their ability to interact with co-introduced and native ectomycorrhizal fungi in novel sites
- Lukáš Vlk
- , Leho Tedersoo
- & Petr Kohout
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Article
| Open AccessVariation in rhizosphere microbial communities and its association with the symbiotic efficiency of rhizobia in soybean
- Qin Han
- , Qun Ma
- & Xia Li
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Article
| Open AccessDark septate endophyte improves salt tolerance of native and invasive lineages of Phragmites australis
- Martina Gonzalez Mateu
- , Andrew H. Baldwin
- & Stephanie A. Yarwood
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Article
| Open AccessSeasonality of interactions between a plant virus and its host during persistent infection in a natural environment
- Mie N. Honjo
- , Naoko Emura
- & Hiroshi Kudoh
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Article |
Structural equation modeling of a winnowed soil microbiome identifies how invasive plants re-structure microbial networks
- Steven D. Mamet
- , Ellen Redlick
- & Steven D. Siciliano
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Perspective
| Open AccessRevisiting the ‘direct mineral cycling’ hypothesis: arbuscular mycorrhizal fungi colonize leaf litter, but why?
- Rebecca A. Bunn
- , Dylan T. Simpson
- & David P. Janos
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Article |
Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae
- Frédéric De Meyer
- , Bram Danneels
- & Aurelien Carlier
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Article |
Pathogen-induced changes in floral scent may increase honeybee-mediated dispersal of Erwinia amylovora
- Antonio Cellini
- , Valentino Giacomuzzi
- & Francesco Spinelli
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Article |
Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress
- Belinda C. Martin
- , Jeremy Bougoure
- & Gary A. Kendrick
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Brief Communication |
Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean
- Lucas William Mendes
- , Rodrigo Mendes
- & Siu Mui Tsai
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Brief Communication
| Open AccessObserved metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange
- Dušan Veličković
- , Beverly J. Agtuca
- & Christopher R. Anderton
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Article
| Open AccessDisease-induced assemblage of a plant-beneficial bacterial consortium
- Roeland L. Berendsen
- , Gilles Vismans
- & Corné M. J. Pieterse
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Original Article |
The impact of elevated CO2 on Prochlorococcus and microbial interactions with ‘helper’ bacterium Alteromonas
- Gwenn MM Hennon
- , J Jeffrey Morris
- & Sonya T Dyhrman
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Original Article |
The plant circadian clock influences rhizosphere community structure and function
- Charley J Hubbard
- , Marcus T Brock
- & Cynthia Weinig
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Original Article |
A novel mechanism for host-mediated photoprotection in endosymbiotic foraminifera
- Katherina Petrou
- , Peter J Ralph
- & Daniel A Nielsen
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Original Article
| Open AccessRoot microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time
- Nina Dombrowski
- , Klaus Schlaeppi
- & Paul Schulze-Lefert
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Original Article
| Open AccessFunctional analysis of liverworts in dual symbiosis with Glomeromycota and Mucoromycotina fungi under a simulated Palaeozoic CO2 decline
- Katie J Field
- , William R Rimington
- & Silvia Pressel
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Original Article |
Non-pathogenic Rhizobium radiobacter F4 deploys plant beneficial activity independent of its host Piriformospora indica
- Stefanie P Glaeser
- , Jafargholi Imani
- & Karl-Heinz Kogel
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Original Article |
Metabolic footprint of epiphytic bacteria on Arabidopsis thaliana leaves
- Florian Ryffel
- , Eric JN Helfrich
- & Julia A Vorholt
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Original Article |
Snapshot prediction of carbon productivity, carbon and protein content in a Southern Ocean diatom using FTIR spectroscopy
- Olivia Sackett
- , Katherina Petrou
- & Philip Heraud
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